vOTU vOTU-003558

vOTU: vOTU-003558

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003558
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-01155 → vSUBGEN-09924 → vOTU-003558
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0171493
Biosample ID	SAMN09781775
Genome length (bp)	40,415 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	91.59%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	498	Host agreement	99
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0171493_1	1408437.JNJN01000043_gene801	96.3	6.3e-22	N/A	N/A
KOfam	UHGV-0171493_2	K14059	183.1	0	int; integrase	N/A
PHROG	UHGV-0171493_2	phrog_1	162.8	0	integrase	integration and excision
UniRef90	UHGV-0171493_2	UniRef90_A0A367GI93	209.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0171493_2	498848.TaqDRAFT_4755	86.3	0.000000000000001	Phage integrase family	N/A
Pfam	UHGV-0171493_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0171493_2	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0171493_2	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0171493_3	K07729	45.0	0.000000000002	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0171493_3	phrog_1373	45.8	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0171493_3	UniRef90_A0A2A7AM70	219.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0171493_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0171493_3	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0171493_3	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0171493_7	K03763	185.4	0	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	N/A
PHROG	UHGV-0171493_7	phrog_192	157.8	0	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171493_7	UniRef90_A0A3R6GCG9	291.0	0	Exonuclease	N/A
eggNOG-mapper	UHGV-0171493_7	1123288.SOV_2c03960	277.0	0	DNA polymerase III	N/A
PADLOC	UHGV-0171493_7	cd06127	136.4	2.4e-40	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
Pfam	UHGV-0171493_7	PF00929	N/A	N/A	Exonuclease	RNase_T
Pfam	UHGV-0171493_7	PF00533	N/A	N/A	BRCA1 C Terminus (BRCT) domain	BRCT
NCBIFam	UHGV-0171493_7	TIGR00573.1	N/A	N/A	exonuclease, DNA polymerase III, epsilon subunit family	N/A
COG	UHGV-0171493_7	COG0272	N/A	N/A	NAD-dependent DNA ligase	N/A
structural_annotation	UHGV-0171493_7	PF00929,PF00533,MF_00157,NF005289,COG0847	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171493_8	PF06776,COG5342	N/A	N/A	N/A	N/A
UniRef90	UHGV-0171493_10	UniRef90_A0A2A7AM72	139.0	1.4e-40	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0171493_10	1378168.N510_01712	61.2	0.000000000895	N/A	N/A
structural_annotation	UHGV-0171493_10	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171493_19	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_20	phrog_72	48.3	0.00000000000016	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0171493_20	411471.SUBVAR_05829	146.0	3.49063e-42	N/A	N/A
structural_annotation	UHGV-0171493_20	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_23	phrog_7566	88.6	4.5e-26	N/A	unknown function
eggNOG-mapper	UHGV-0171493_23	411471.SUBVAR_05830	113.0	2.3e-31	N/A	N/A
KOfam	UHGV-0171493_24	K03111	136.3	3.7e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0171493_24	phrog_44	138.3	5.10003e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171493_24	UniRef90_A0A2A7B6R5	250.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0171493_24	411483.FAEPRAA2165_01975	196.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0171493_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0171493_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0171493_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0171493_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0171493_24	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_25	phrog_6969	54.3	0.0000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0171493_25	748224.HMPREF9436_00735	130.0	9.65e-33	N/A	N/A
Pfam	UHGV-0171493_25	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
Pfam	UHGV-0171493_25	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0171493_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0171493_25	PF19481,PF01978,MF_01819,TIGR01610,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-0171493_27	K03496	211.9	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0171493_27	phrog_164	148.2	5.74532e-44	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171493_27	UniRef90_A0A2A7B6H3	306.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171493_27	411471.SUBVAR_05839	224.0	0	AAA domain	N/A
Pfam	UHGV-0171493_27	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0171493_27	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0171493_27	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
Pfam	UHGV-0171493_28	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0171493_28	PF04448	N/A	N/A	N/A	N/A
KOfam	UHGV-0171493_29	K03497	89.6	6.7e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0171493_29	phrog_4715	113.0	2.8e-33	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171493_29	UniRef90_A0A2A7B6Q0	239.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0171493_29	411471.SUBVAR_05842	156.0	2.69e-40	ParB-like nuclease domain	N/A
Pfam	UHGV-0171493_29	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0171493_29	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0171493_29	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0171493_30	PF04545	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_31	phrog_13999	69.8	2.5e-20	N/A	unknown function
eggNOG-mapper	UHGV-0171493_31	1391428.V5KT07_9CAUD	68.9	0.0000000000000143	N/A	N/A
KOfam	UHGV-0171493_35	K07319	106.2	4.2e-31	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	N/A
PHROG	UHGV-0171493_35	phrog_18293	123.1	1.6e-36	methyltransferase	other
UniRef90	UHGV-0171493_35	UniRef90_A0A1C6BYZ5	109.0	1.44e-28	Modification methylase DpnIIB	N/A
eggNOG-mapper	UHGV-0171493_35	1217656.F964_00563	102.0	2.28e-25	DNA methylase	N/A
PADLOC	UHGV-0171493_35	MTase_II_00037	90.9	3e-26	Type II methyltransferase	RM
Pfam	UHGV-0171493_35	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0171493_35	COG0863	N/A	N/A	DNA modification methylase	N/A
PHROG	UHGV-0171493_36	phrog_119	61.2	1.7e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171493_36	UniRef90_A0A2A7AM49	211.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0171493_36	349161.Dred_2609	89.7	9.82e-22	HNH nucleases	N/A
COG	UHGV-0171493_36	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0171493_37	phrog_13845	60.3	2.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0171493_37	1399942.U3PDR2_9CAUD	72.4	0.000000000000009	N/A	N/A
Pfam	UHGV-0171493_37	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0171493_37	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_38	phrog_9	236.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0171493_38	UniRef90_A0A2A7ALT4	1032.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0171493_38	610130.Closa_0741	624.0	0	Phage Terminase	N/A
Pfam	UHGV-0171493_38	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0171493_38	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0171493_38	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_39	phrog_12	133.2	1.6e-39	portal protein	head and packaging
UniRef90	UHGV-0171493_39	UniRef90_A0A2A7B6S8	553.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0171493_39	349161.Dred_2606	291.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0171493_39	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0171493_39	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0171493_39	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0171493_39	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0171493_40	K01358	88.6	9.9e-26	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0171493_40	phrog_94	139.4	4.10006e-41	head maturation protease	head and packaging
UniRef90	UHGV-0171493_40	UniRef90_UPI001C10F40E	159.0	3.36312e-44	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0171493_40	1232452.BAIB02000007_gene1626	147.0	4.47995e-41	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0171493_40	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0171493_40	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0171493_40	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_41	phrog_10	131.8	5.9e-39	major head protein	head and packaging
UniRef90	UHGV-0171493_41	UniRef90_A0A2A7B712	739.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0171493_41	1235792.C808_00086	447.0	0	Phage capsid family	N/A
Pfam	UHGV-0171493_41	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0171493_41	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0171493_41	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0171493_41	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0171493_41	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_42	phrog_749	54.6	0.0000000000000017	N/A	unknown function
UniRef90	UHGV-0171493_42	UniRef90_A0A7V7BBS9	68.2	0.00000000000094	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0171493_42	1235792.C808_00087	79.3	7.43e-18	N/A	N/A
PHROG	UHGV-0171493_43	phrog_19734	100.6	1.3e-29	N/A	unknown function
UniRef90	UHGV-0171493_43	UniRef90_A0A6I7GNS7	120.0	2.18e-32	Phage head closure protein	N/A
eggNOG-mapper	UHGV-0171493_43	349161.Dred_2602	71.6	0.0000000000000289	N/A	N/A
structural_annotation	UHGV-0171493_43	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171493_44	999413.HMPREF1094_02005	71.6	0.00000000000000883	N/A	N/A
structural_annotation	UHGV-0171493_44	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_45	phrog_5	47.8	0.00000000000035	tail completion or Neck1 protein	connector
UniRef90	UHGV-0171493_45	UniRef90_A0A1C6FG30	128.0	1.67e-34	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0171493_45	908340.HMPREF9406_2573	119.0	4.9e-32	N/A	N/A
Pfam	UHGV-0171493_45	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
NCBIFam	UHGV-0171493_45	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0171493_45	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_46	phrog_88	84.2	1.8e-24	major tail protein	tail
UniRef90	UHGV-0171493_46	UniRef90_A0A7U9IBX1	128.0	8.58e-34	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0171493_46	33035.JPJF01000039_gene278	77.0	0.0000000000000109	N/A	N/A
NCBIFam	UHGV-0171493_46	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0171493_46	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171493_47	1286171.EAL2_c05960	51.2	0.00000411	N/A	N/A
PHROG	UHGV-0171493_49	phrog_58	102.0	8.6e-30	tail length tape measure protein	tail
UniRef90	UHGV-0171493_49	UniRef90_A0A2A7ALS3	805.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0171493_49	596328.HMPREF0578_1241	162.0	8.54e-38	phage tail tape measure protein	N/A
Pfam	UHGV-0171493_49	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0171493_49	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0171493_49	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0171493_49	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_50	phrog_33	89.2	8.4e-26	distal tail protein Dit	tail
UniRef90	UHGV-0171493_50	UniRef90_A0A1C6H6D2	128.0	5.91e-33	Phage-related protein	N/A
eggNOG-mapper	UHGV-0171493_50	439292.Bsel_2995	110.0	6.72e-27	tail component	N/A
COG	UHGV-0171493_50	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0171493_50	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_51	phrog_1067	188.9	0	minor head protein	head and packaging
UniRef90	UHGV-0171493_51	UniRef90_A0A2A7AM44	490.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0171493_51	1123263.AUKY01000068_gene489	213.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0171493_51	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0171493_51	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0171493_51	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0171493_51	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_53	phrog_17312	50.7	0.000000000000011	tail protein	tail
Pfam	UHGV-0171493_53	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-0171493_53	COG5434	N/A	N/A	Polygalacturonase	N/A
KOfam	UHGV-0171493_54	K07273	156.1	0	acm; lysozyme	N/A
PHROG	UHGV-0171493_54	phrog_291	108.0	1.1e-31	endolysin	lysis
UniRef90	UHGV-0171493_54	UniRef90_A0A564U0D3	402.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0171493_54	718252.FP2_04890	241.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0171493_54	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0171493_54	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0171493_54	PF01183,TIGR04053,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_56	phrog_15303	76.7	2.8e-22	N/A	unknown function
PHROG	UHGV-0171493_58	phrog_374	49.5	2.7e-25	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0171493_58	UniRef90_UPI001C0BF339	95.5	1.27e-19	transcriptional regulator	N/A
eggNOG-mapper	UHGV-0171493_58	887929.HMP0721_2409	71.6	0.00000000000686	N/A	N/A
structural_annotation	UHGV-0171493_58	PF18337,PF00847	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171493_59	1235798.C817_04600	60.8	0.00000000015	N/A	N/A
structural_annotation	UHGV-0171493_59	PF13560,NF040522	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0171493_62	1160721.RBI_I00206	57.4	0.000000000207	N/A	N/A
Pfam	UHGV-0171493_62	PF09274	N/A	N/A	ParG	ParG
structural_annotation	UHGV-0171493_62	PF10723	N/A	N/A	N/A	N/A
PHROG	UHGV-0171493_63	phrog_21718	41.3	0.000000000024	N/A	unknown function
PHROG	UHGV-0171493_65	phrog_16490	103.7	6.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0171493_65	1408437.JNJN01000043_gene803	159.0	8.40779e-45	N/A	N/A
eggNOG-mapper	UHGV-0171493_66	1408437.JNJN01000043_gene802	119.0	3.41e-33	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0171493	Yes	40,415	54	100	1
UHGV-0212608	No	40,415	54	100	1