vOTU vOTU-003620

vOTU: vOTU-003620

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003620
Number of genomes	8
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00074 → vSUBFAM-01638 → vGENUS-12679 → vSUBGEN-19515 → vOTU-003620
Host lineage	Bacteria → Firmicutes_A
Host range breadth	Phylum
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1376094
Biosample ID	SAMN00036141
Genome length (bp)	36,801 bps
CheckV completeness	100.00% (Complete)
CDS count	48
CDS density	94.19%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage		Total connections		Host agreement
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	2	Host agreement	50

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1376094_1	K07727	41.1	0.000000000042	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1376094_1	UniRef90_A0A7Y7ND07	55.5	0.000000332	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376094_1	1123075.AUDP01000024_gene1080	52.0	0.00000392	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1376094_1	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1376094_1	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-1376094_2	K14059	152.3	5.60519e-45	int; integrase	N/A
PHROG	UHGV-1376094_2	phrog_1	131.6	7.2e-39	integrase	integration and excision
UniRef90	UHGV-1376094_2	UniRef90_A0A316QM90	363.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1376094_2	504487.JCM19302_391	65.1	0.0000000125	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1376094_2	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1376094_2	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
UniRef90	UHGV-1376094_8	UniRef90_A0A3E2B3T2	77.8	2.74e-16	N/A	N/A
PHROG	UHGV-1376094_10	phrog_35419	41.5	0.000000000021	tail fiber protein	tail
eggNOG-mapper	UHGV-1376094_10	913865.DOT_2884	62.8	0.000000596	cellulose 1,4-beta-cellobiosidase activity	N/A
COG	UHGV-1376094_10	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
structural_annotation	UHGV-1376094_11	PF06013,MF_00683,NF003844,COG4842	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376094_12	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
Pfam	UHGV-1376094_14	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
structural_annotation	UHGV-1376094_16	PF09393,PF05561,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376094_18	PF07405,TIGR01563	N/A	N/A	N/A	N/A
Pfam	UHGV-1376094_20	PF18812	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
structural_annotation	UHGV-1376094_21	PF05065,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_23	phrog_581	100.2	2.9e-29	minor head protein	head and packaging
UniRef90	UHGV-1376094_23	UniRef90_A0A2Z4GUI4	222.0	0	Minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1376094_23	1280692.AUJL01000027_gene2164	69.3	0.000000000367	Phage minor capsid protein 2	N/A
Pfam	UHGV-1376094_23	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1376094_23	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1376094_23	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_24	phrog_533	119.1	2.1e-35	portal protein	head and packaging
Pfam	UHGV-1376094_24	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1376094_24	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1376094_26	K06909	148.5	6.02558e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1376094_26	phrog_2	87.5	2.6e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1376094_26	UniRef90_A0A843GU32	193.0	0	Phage terminase large subunit (Fragment)	N/A
eggNOG-mapper	UHGV-1376094_26	10724.TERL_BPSPP	57.8	0.0000038	Phage terminase large subunit	N/A
Pfam	UHGV-1376094_26	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
structural_annotation	UHGV-1376094_26	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_27	phrog_2412	96.9	1.9e-28	N/A	unknown function
UniRef90	UHGV-1376094_27	UniRef90_R5AAQ5	73.6	0.0000000000000401	N/A	N/A
eggNOG-mapper	UHGV-1376094_27	556268.OFAG_00320	65.5	0.0000000000106	N/A	N/A
UniRef90	UHGV-1376094_28	UniRef90_A0A2Z4GUJ6	102.0	1.56e-25	RinA family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1376094_28	246194.CHY_1683	51.6	0.00000233	phage transcriptional regulator, RinA family	N/A
Pfam	UHGV-1376094_28	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-1376094_28	PF05263,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_29	phrog_8684	102.7	1.4e-32	N/A	unknown function
UniRef90	UHGV-1376094_29	UniRef90_UPI0007B31CAE	113.0	4.69e-30	YopX family protein	N/A
eggNOG-mapper	UHGV-1376094_29	1458852.A0A059T7V5_9CAUD	95.1	2.45e-23	YopX protein	N/A
Pfam	UHGV-1376094_29	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-1376094_29	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-1376094_29	PF09643,TIGR01671	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1376094_32	397290.C810_01492	52.8	0.00000076	N/A	N/A
KOfam	UHGV-1376094_34	K03111	142.2	5.70048e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1376094_34	phrog_44	139.6	1.99993e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376094_34	UniRef90_A0A2V2ET76	152.0	4.2039e-45	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1376094_34	768710.DesyoDRAFT_5235	114.0	6.16e-31	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-1376094_34	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1376094_34	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1376094_34	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1376094_34	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1376094_34	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_35	phrog_9298	321.9	0	radical SAM domain protein	other
UniRef90	UHGV-1376094_35	UniRef90_UPI0019113502	546.0	0	radical SAM protein	N/A
eggNOG-mapper	UHGV-1376094_35	97138.C820_02863	340.0	0	N/A	N/A
COG	UHGV-1376094_35	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1376094_35	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
KOfam	UHGV-1376094_36	K00558	212.7	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1376094_36	phrog_116	260.3	0	DNA methyltransferase	other
UniRef90	UHGV-1376094_36	UniRef90_UPI00164A64BC	373.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1376094_36	445972.ANACOL_03332	343.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1376094_36	oMTase_00004	290.7	0	orphan methyltransferase	RM
Pfam	UHGV-1376094_36	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1376094_36	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1376094_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1376094_36	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1376094_37	K02315	125.7	4.3e-37	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1376094_37	phrog_50	115.8	4.4e-34	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376094_37	UniRef90_F7V9D6	135.0	1.26e-34	Putative DnaC	N/A
eggNOG-mapper	UHGV-1376094_37	508419.F8J195_9CAUD	134.0	5.86e-35	IstB-like ATP binding protein	N/A
Pfam	UHGV-1376094_37	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
structural_annotation	UHGV-1376094_37	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_38	phrog_16304	94.0	1.9e-27	N/A	unknown function
eggNOG-mapper	UHGV-1376094_38	1227266.HMPREF1551_00549	93.6	5.99e-20	N/A	N/A
Pfam	UHGV-1376094_38	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1376094_38	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_39	phrog_1682	65.0	1.2e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376094_39	UniRef90_R7FGZ0	108.0	6.78e-28	Gp63	N/A
eggNOG-mapper	UHGV-1376094_39	997350.HMPREF9129_1668	85.9	9.83e-20	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-1376094_39	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1376094_39	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1376094_40	K07455	288.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1376094_40	phrog_148	258.7	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376094_40	UniRef90_UPI0014317E61	264.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1376094_40	1226322.HMPREF1545_00015	256.0	0	RecT family	N/A
Pfam	UHGV-1376094_40	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1376094_40	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1376094_40	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1376094_40	PF03837,NF007351,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1376094_41	phrog_434	259.5	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1376094_41	UniRef90_I7K5R8	240.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1376094_41	857293.CAAU_0780	240.0	0	YqaJ-like viral recombinase domain	N/A
Pfam	UHGV-1376094_41	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1376094_41	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1376094_41	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1376094_41	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
Pfam	UHGV-1376094_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
UniRef90	UHGV-1376094_48	UniRef90_A0A1R5GFI5	60.1	0.000000000265	XRE family transcriptional regulator	N/A
structural_annotation	UHGV-1376094_48	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1376094	Yes	36,801	44	100	1
UHGV-2218887	No	36,801	44	100	1
UHGV-1932940	No	36,921	44	100	1
UHGV-0208809	No	36,807	44	100	1
UHGV-1509200	No	31,764	45	86	1
UHGV-2217064	No	30,585	44	83	1
UHGV-1939384	No	22,929	45	62	1
UHGV-1549947	No	10,112	46	27	1