vOTU vOTU-003678

vOTU: vOTU-003678

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003678
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01494 → vGENUS-02916 → vSUBGEN-26011 → vOTU-003678
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-177
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0301643
Biosample ID	SAMN06165059
Genome length (bp)	29,038 bps
CheckV completeness	100.00% (Complete)
CDS count	47
CDS density	90.96%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → CAG-177	Total connections	450	Host agreement	93.56
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0301643_1	phrog_3339	67.0	2.5e-19	homing endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0301643_1	1006972.H6SU53_9CAUD	59.3	0.00000021	regulation of transcription, DNA-dependent	N/A
Pfam	UHGV-0301643_1	PF00583	N/A	N/A	Acetyltransferase (GNAT) family	Acetyltransf_1
PHROG	UHGV-0301643_3	phrog_2412	42.8	0.0000000000043	N/A	unknown function
UniRef90	UHGV-0301643_3	UniRef90_UPI00148CF931	52.0	0.00000546	stress-induced protein	N/A
eggNOG-mapper	UHGV-0301643_3	556268.OFAG_00320	65.9	0.0000000000039	N/A	N/A
structural_annotation	UHGV-0301643_3	PF18932	N/A	N/A	N/A	N/A
KOfam	UHGV-0301643_4	K06909	384.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0301643_4	phrog_3717	230.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0301643_4	UniRef90_A0A7V8A6P5	426.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0301643_4	386415.NT01CX_0834	403.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0301643_4	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0301643_4	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0301643_4	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0301643_4	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0301643_4	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_6	phrog_64	125.9	2.1e-37	portal protein	head and packaging
UniRef90	UHGV-0301643_6	UniRef90_UPI0018A8A301	499.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0301643_6	673376.F2VHW1_9CAUD	198.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0301643_6	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0301643_6	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0301643_7	PF20622,NF033814	N/A	N/A	N/A	N/A
Pfam	UHGV-0301643_8	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-0301643_8	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
structural_annotation	UHGV-0301643_8	PF13306	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_10	phrog_27545	98.5	6.9e-29	N/A	unknown function
UniRef90	UHGV-0301643_10	UniRef90_R6ELD6	95.1	2.47e-22	Glycosyl hydrolase family 18 family protein	N/A
eggNOG-mapper	UHGV-0301643_10	411471.SUBVAR_06976	100.0	5.65e-25	N/A	N/A
KOfam	UHGV-0301643_11	K01448	121.7	7.8e-36	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0301643_11	phrog_435	147.3	1.30321e-43	endolysin	lysis
UniRef90	UHGV-0301643_11	UniRef90_A0A3D5TMB6	509.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0301643_11	1203606.HMPREF1526_00962	100.0	4.31e-22	Ami_3	N/A
Pfam	UHGV-0301643_11	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0301643_11	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0301643_11	PF01520,PF15591,MF_00562,TIGR02883,NF033202,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_12	phrog_263	78.7	4.8e-23	holin	lysis
UniRef90	UHGV-0301643_12	UniRef90_A0A3D5TN47	171.0	0	Phage holin	N/A
eggNOG-mapper	UHGV-0301643_12	1121344.JHZO01000004_gene1372	59.7	0.00000000016	SPP1 phage holin	N/A
Pfam	UHGV-0301643_12	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0301643_12	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0301643_12	PF04688,TIGR01592	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_13	phrog_2468	107.9	7.4e-32	head morphogenesis	head and packaging
UniRef90	UHGV-0301643_13	UniRef90_A0A3D2MUF2	230.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0301643_13	1504822.CCNO01000013_gene286	160.0	6.99949e-42	cell adhesion	N/A
Pfam	UHGV-0301643_13	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0301643_13	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0301643_13	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_14	phrog_5	50.6	0.000000000000032	tail completion or Neck1 protein	connector
eggNOG-mapper	UHGV-0301643_14	1504822.CCNO01000013_gene284	73.2	0.00000000000000628	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0301643_14	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0301643_14	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_15	phrog_194	45.9	0.0000000000011	head scaffolding protein	head and packaging
UniRef90	UHGV-0301643_15	UniRef90_A0A6B9SU02	111.0	4.51e-27	Fibronectin autolysin	N/A
structural_annotation	UHGV-0301643_15	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_16	phrog_267	194.4	0	major head protein	head and packaging
UniRef90	UHGV-0301643_16	UniRef90_F8UBM2	284.0	0	p22 coat protein	N/A
eggNOG-mapper	UHGV-0301643_16	673376.F2VHW8_9CAUD	284.0	0	viral capsid	N/A
structural_annotation	UHGV-0301643_16	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_19	phrog_17977	79.9	2.5e-23	N/A	unknown function
UniRef90	UHGV-0301643_19	UniRef90_UPI00141211AB	122.0	1.34e-33	head-tail adaptor protein	N/A
structural_annotation	UHGV-0301643_19	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_20	phrog_17405	45.9	0.000000000001	head protein	head and packaging
UniRef90	UHGV-0301643_20	UniRef90_A0A415JI88	85.5	4.42e-19	N/A	N/A
structural_annotation	UHGV-0301643_20	PF11367	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_21	phrog_885	81.5	9.5e-24	major tail protein	tail
UniRef90	UHGV-0301643_21	UniRef90_A0A843J9F0	219.0	0	Ig-like domain-containing protein	N/A
eggNOG-mapper	UHGV-0301643_21	1504822.CCNO01000012_gene492	260.0	0	N/A	N/A
structural_annotation	UHGV-0301643_21	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_24	phrog_6900	219.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0301643_24	UniRef90_A0A4D6A5R1	145.0	6.26997e-41	Minor tail protein	N/A
eggNOG-mapper	UHGV-0301643_24	1121334.KB911068_gene2299	163.0	2.8026e-44	Phage tail tape measure protein, TP901 family	N/A
COG	UHGV-0301643_24	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0301643_24	PF20155	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_25	phrog_58	121.5	6.2e-36	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0301643_25	545697.HMPREF0216_02861	152.0	8.53e-37	tail tape measure protein	N/A
COG	UHGV-0301643_25	COG5283	N/A	N/A	Phage-related tail protein	N/A
PHROG	UHGV-0301643_26	phrog_33	91.2	2e-26	distal tail protein Dit	tail
UniRef90	UHGV-0301643_26	UniRef90_UPI00164BA811	182.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0301643_26	1160721.RBI_I01575	177.0	0	Phage tail protein	N/A
NCBIFam	UHGV-0301643_26	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0301643_26	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0301643_26	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_27	phrog_1067	370.4	0	minor head protein	head and packaging
UniRef90	UHGV-0301643_27	UniRef90_UPI000CF99656	359.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0301643_27	1160721.RBI_I01574	332.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0301643_27	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0301643_27	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0301643_27	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0301643_27	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_30	phrog_7339	78.7	6.6e-23	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_30	UniRef90_A0A136Q8Q2	194.0	0	Ser/Thr phosphatase family protein	N/A
eggNOG-mapper	UHGV-0301643_30	443254.Marpi_0340	76.6	0.000000000000104	metallophosphoesterase	N/A
COG	UHGV-0301643_30	COG1408	N/A	N/A	Predicted phosphohydrolase, MPP superfamily	N/A
structural_annotation	UHGV-0301643_30	PF12850,MF_00325,NF003118,COG1311	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_36	phrog_659	213.2	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_36	UniRef90_A0A843HUJ5	239.0	0	N/A	N/A
eggNOG-mapper	UHGV-0301643_36	1507.HMPREF0262_00431	239.0	0	N/A	N/A
Pfam	UHGV-0301643_36	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0301643_36	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_37	phrog_72	64.7	1.4e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_37	UniRef90_UPI000C7BF263	168.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0301643_37	445972.ANACOL_01825	140.0	6.35e-40	N/A	N/A
structural_annotation	UHGV-0301643_37	PF05772,NF007281	N/A	N/A	N/A	N/A
KOfam	UHGV-0301643_39	K03111	133.6	2.4e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0301643_39	phrog_44	125.9	3.3e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_39	UniRef90_R6E141	139.0	4.62e-40	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0301643_39	1507.HMPREF0262_00434	130.0	1.94e-37	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0301643_39	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0301643_39	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0301643_39	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0301643_39	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0301643_39	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_40	phrog_428	143.2	2.40042e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_40	UniRef90_UPI001C103B88	148.0	7.19001e-40	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0301643_40	457396.CSBG_01034	131.0	2.07e-33	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0301643_40	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0301643_40	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0301643_40	COG1846	N/A	N/A	DNA-binding transcriptional regulator, MarR family	N/A
KOfam	UHGV-0301643_41	K02315	173.6	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0301643_41	phrog_50	161.6	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_41	UniRef90_A0A3A5TME7	223.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0301643_41	552396.HMPREF0863_01515	192.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0301643_41	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0301643_41	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0301643_41	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0301643_41	PF01695,MF_01158,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0301643_42	K01520	139.9	1.99993e-41	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0301643_42	phrog_135	128.1	5.1e-38	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_42	UniRef90_UPI00164A78A3	198.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-0301643_42	1282887.AUJG01000016_gene1113	150.0	7.00649e-44	N/A	N/A
Pfam	UHGV-0301643_42	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0301643_42	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0301643_42	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0301643_42	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
KOfam	UHGV-0301643_43	K00390	82.7	4.7e-24	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0301643_43	phrog_424	164.6	0	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0301643_43	UniRef90_A0A7C6XWI3	387.0	0	Phosphoadenosine phosphosulfate reductase family protein (Fragment)	N/A
eggNOG-mapper	UHGV-0301643_43	537013.CLOSTMETH_01340	323.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-0301643_43	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0301643_43	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0301643_43	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0301643_44	K01160	53.7	0.0000000000000061	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0301643_44	phrog_34	60.6	3e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_44	UniRef90_A0A498CNH4	147.0	2.9147e-43	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0301643_44	1567011.A0A0A7S133_9VIRU	51.2	0.00000246	Endodeoxyribonuclease RusA	N/A
structural_annotation	UHGV-0301643_44	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0301643_45	phrog_30822	43.4	0.0000000000066	N/A	unknown function
structural_annotation	UHGV-0301643_45	PF01381,PF13613,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0301643_46	K03497	55.7	0.0000000000000014	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0301643_46	phrog_620	153.4	1.4013e-45	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0301643_46	UniRef90_A0A810PZK9	188.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0301643_46	173707.Q938L7_9CAUD	117.0	1.09e-30	helicase activity	N/A
PADLOC	UHGV-0301643_46	MTase_II_00015	93.1	5.4e-27	Type II methyltransferase	RM
Pfam	UHGV-0301643_46	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0301643_46	PF06411	N/A	N/A	HdeA/HdeB family	HdeA
structural_annotation	UHGV-0301643_46	PF02195,TIGR00180,COG5119	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0301643	Yes	29,038	46	100	1
UHGV-0196748	No	29,038	46	100	1
UHGV-0164109	No	28,972	46	83	1
UHGV-1436667	No	28,972	46	83	1