vOTU vOTU-003773

vOTU: vOTU-003773

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003773
Number of genomes	7
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00173 → vGENUS-00597 → vSUBGEN-33550 → vOTU-003773
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2023342
Biosample ID	N/A
Genome length (bp)	38,638 bps
CheckV completeness	100.00% (Complete)
CDS count	69
CDS density	92.17%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	77	Host agreement	76.62
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp003150355	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-2023342_2	UniRef90_A0A374HMN8	49.7	0.00000344	XRE family transcriptional regulator	N/A
PHROG	UHGV-2023342_5	phrog_8	51.4	0.000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-2023342_5	UniRef90_A0A374HKJ0	88.2	1.49e-20	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-2023342_5	397291.C804_05804	77.4	8.09e-17	TRANSCRIPTIONal	N/A
Pfam	UHGV-2023342_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-2023342_5	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-2023342_5	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-2023342_6	PF16729	N/A	N/A	N/A	DUF5067
structural_annotation	UHGV-2023342_6	PF16729,MF_00791,TIGR04087,COG2967	N/A	N/A	N/A	N/A
KOfam	UHGV-2023342_7	K07729	43.3	0.0000000000066	K07729; putative transcriptional regulator	N/A
Pfam	UHGV-2023342_7	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2023342_7	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2023342_7	PF13443,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-2023342_8	K14059	96.9	3.3e-28	int; integrase	N/A
PHROG	UHGV-2023342_8	phrog_1	118.2	9.2e-35	integrase	integration and excision
UniRef90	UHGV-2023342_8	UniRef90_UPI000F051A1D	479.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-2023342_8	693746.OBV_43340	416.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2023342_8	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2023342_8	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2023342_8	PF00589,PF13495,MF_02055,TIGR02225,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2023342_9	UniRef90_A0A7M1RSZ3	68.6	0.0000000000524	RNA polymerase sigma factor/ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-2023342_9	1378168.N510_03079	104.0	5.98e-25	N/A	N/A
eggNOG-mapper	UHGV-2023342_10	1408437.JNJN01000043_gene802	146.0	7.70714e-44	N/A	N/A
PHROG	UHGV-2023342_11	phrog_16490	124.4	9.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-2023342_11	1408437.JNJN01000043_gene803	185.0	0	N/A	N/A
eggNOG-mapper	UHGV-2023342_13	445972.ANACOL_01878	67.0	0.0000000000028	N/A	N/A
PHROG	UHGV-2023342_15	phrog_1129	67.0	2.1e-19	holin	lysis
UniRef90	UHGV-2023342_15	UniRef90_UPI00189DD88C	125.0	5.96e-36	phage holin family protein	N/A
eggNOG-mapper	UHGV-2023342_15	1226322.HMPREF1545_00069	132.0	1.86e-39	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-2023342_15	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2023342_15	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_16	phrog_937	54.5	0.0000000000000021	hemolysin	other
eggNOG-mapper	UHGV-2023342_16	1297617.JPJD01000099_gene2176	65.1	0.00000000000143	N/A	N/A
PHROG	UHGV-2023342_17	phrog_14030	167.2	0	N/A	unknown function
UniRef90	UHGV-2023342_17	UniRef90_A0A316NTC6	216.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-2023342_17	1321782.HMPREF1986_02283	191.0	0	NlpC/P60 family	N/A
Pfam	UHGV-2023342_17	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-2023342_17	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2023342_17	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-2023342_17	PF01471,PF05382,NF038080,NF033742,COG3409,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_22	phrog_19111	42.1	0.000000000007	N/A	unknown function
structural_annotation	UHGV-2023342_22	PF07210,PF01404,TIGR03000,NF038128,COG2512	N/A	N/A	N/A	N/A
UniRef90	UHGV-2023342_25	UniRef90_A0A8D9PDX6	57.4	0.00000000931	Zinc-finger double domain protein	N/A
structural_annotation	UHGV-2023342_25	PF07238	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2023342_26	1235797.C816_04179	84.7	0.00000000000000497	Chaperone of endosialidase	N/A
structural_annotation	UHGV-2023342_26	NF041249,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-2023342_27	UniRef90_A0A2Z4QA17	98.2	3.43e-21	KID repeat-containing protein	N/A
eggNOG-mapper	UHGV-2023342_27	1232443.BAIA02000078_gene16	100.0	8.22e-23	N/A	N/A
structural_annotation	UHGV-2023342_27	PF21683,TIGR02126,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_28	phrog_1194	59.7	5e-17	N/A	unknown function
eggNOG-mapper	UHGV-2023342_28	1232443.BAIA02000078_gene17	49.3	0.00000829	N/A	N/A
structural_annotation	UHGV-2023342_28	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_29	phrog_1535	80.9	2.5e-29	tail length tape measure protein	tail
eggNOG-mapper	UHGV-2023342_29	1262449.CP6013_1049	76.3	0.0000000000254	tail tape measure protein	N/A
COG	UHGV-2023342_29	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-2023342_30	phrog_706	123.3	1.8e-36	N/A	unknown function
UniRef90	UHGV-2023342_30	UniRef90_UPI000682A80B	196.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-2023342_30	693746.OBV_18170	180.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2023342_30	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2023342_30	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_31	phrog_11299	50.9	0.000000000000031	N/A	unknown function
eggNOG-mapper	UHGV-2023342_31	693746.OBV_18160	137.0	9.67e-40	N/A	N/A
structural_annotation	UHGV-2023342_31	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_32	phrog_3099	70.9	2.1e-20	N/A	unknown function
eggNOG-mapper	UHGV-2023342_32	1235797.C816_04186	208.0	0	N/A	N/A
structural_annotation	UHGV-2023342_32	PF10772,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_33	phrog_3266	52.4	0.0000000000000079	tail completion	connector
eggNOG-mapper	UHGV-2023342_33	1232443.BAIA02000078_gene24	112.0	3.89e-30	N/A	N/A
structural_annotation	UHGV-2023342_33	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_34	phrog_556	54.4	0.000000000000002	minor head protein	head and packaging
UniRef90	UHGV-2023342_34	UniRef90_A0A2U1BEM0	100.0	1.81e-24	Minor capsid protein	N/A
eggNOG-mapper	UHGV-2023342_34	1226322.HMPREF1545_00054	93.2	2.34e-22	Minor capsid protein	N/A
Pfam	UHGV-2023342_34	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2023342_34	PF11114,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_35	phrog_3366	94.6	8.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-2023342_35	1226322.HMPREF1545_00053	107.0	1.08e-27	N/A	N/A
structural_annotation	UHGV-2023342_35	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_36	phrog_541	108.4	4.4e-32	head-tail adaptor	connector
eggNOG-mapper	UHGV-2023342_36	1120998.AUFC01000030_gene2237	72.8	0.00000000000000775	N/A	N/A
PHROG	UHGV-2023342_37	phrog_10	178.1	0	major head protein	head and packaging
UniRef90	UHGV-2023342_37	UniRef90_A0A2U1BEF2	521.0	0	HK97 family phage major capsid protein	N/A
eggNOG-mapper	UHGV-2023342_37	1226322.HMPREF1545_00050	461.0	0	Phage capsid family	N/A
Pfam	UHGV-2023342_37	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-2023342_37	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-2023342_37	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-2023342_37	PF05065,PF13620,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_38	phrog_2303	55.8	5.5e-16	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-2023342_38	1226322.HMPREF1545_00049	115.0	2.33e-30	N/A	N/A
PHROG	UHGV-2023342_40	phrog_581	261.6	0	minor head protein	head and packaging
UniRef90	UHGV-2023342_40	UniRef90_A0A1C5N7V1	362.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2023342_40	525255.HMPREF0077_0390	279.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2023342_40	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-2023342_40	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-2023342_40	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2023342_40	PF06152,PF15542,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_41	phrog_533	398.6	0	portal protein	head and packaging
UniRef90	UHGV-2023342_41	UniRef90_A0A2U1BEK0	576.0	0	A118 family predicted phage portal protein	N/A
eggNOG-mapper	UHGV-2023342_41	1226322.HMPREF1545_00044	529.0	0	N/A	N/A
Pfam	UHGV-2023342_41	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-2023342_41	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2023342_42	K06909	385.4	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2023342_42	phrog_3717	147.7	5.46506e-44	terminase large subunit	head and packaging
UniRef90	UHGV-2023342_42	UniRef90_A0A6L8SYJ6	632.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2023342_42	33035.JPJF01000106_gene3136	476.0	0	Terminase small subunit	N/A
Pfam	UHGV-2023342_42	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2023342_42	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2023342_42	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2023342_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2023342_42	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_43	phrog_620	42.6	0.000000000011	ParB-like partition protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2023342_43	1321774.HMPREF9108_02319	48.5	0.00000864	ParB-like nuclease domain	N/A
COG	UHGV-2023342_43	COG0863	N/A	N/A	DNA modification methylase	N/A
eggNOG-mapper	UHGV-2023342_44	1297617.JPJD01000059_gene2640	107.0	6.03e-28	N/A	N/A
structural_annotation	UHGV-2023342_44	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-2023342_46	K01520	163.6	0	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-2023342_46	phrog_135	131.8	3.4e-39	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023342_46	UniRef90_UPI001873736C	183.0	0	dUTP diphosphatase	N/A
eggNOG-mapper	UHGV-2023342_46	1282887.AUJG01000016_gene1113	157.0	0	N/A	N/A
Pfam	UHGV-2023342_46	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-2023342_46	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-2023342_46	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-2023342_46	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_52	phrog_799	48.2	0.00000000000012	DNA methyltransferase	other
UniRef90	UHGV-2023342_52	UniRef90_A0A4U8T4F4	100.0	2.8e-23	Sugar-phosphate nucleotidyltransferase	N/A
eggNOG-mapper	UHGV-2023342_52	537971.HCCG_00428	98.2	1.53e-23	N/A	N/A
structural_annotation	UHGV-2023342_52	PF05869,MF_00607,NF000468,COG0030	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_53	phrog_15773	43.8	4.2e-19	N/A	unknown function
dbAPIS	UHGV-2023342_53	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
PHROG	UHGV-2023342_54	phrog_1770	102.1	5.5e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023342_54	UniRef90_A0A1L8CM45	103.0	2.55e-25	Crossover junction endodeoxyribonuclease RuvC	N/A
eggNOG-mapper	UHGV-2023342_54	994601.G9BW80_9CAUD	99.0	2.34e-24	nucleic acid binding	N/A
structural_annotation	UHGV-2023342_54	PF16921,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2023342_55	1507.HMPREF0262_00432	53.1	0.00000099	N/A	N/A
PHROG	UHGV-2023342_56	phrog_9804	143.6	1.10002e-42	N/A	unknown function
UniRef90	UHGV-2023342_56	UniRef90_R6LQQ5	162.0	0	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-2023342_56	1121344.JHZO01000003_gene981	161.0	0	Loader and inhibitor of phage G40P	N/A
Pfam	UHGV-2023342_56	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-2023342_56	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_57	phrog_2149	74.7	1.4e-21	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023342_57	UniRef90_UPI00164BB1D1	99.8	8.86e-22	transcriptional regulator	N/A
eggNOG-mapper	UHGV-2023342_57	1095750.HMPREF9970_1674	145.0	8.33e-40	N/A	N/A
structural_annotation	UHGV-2023342_57	PF01978,MF_01819,NF041413,COG0735	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_58	phrog_4973	63.8	2.5e-18	N/A	unknown function
UniRef90	UHGV-2023342_58	UniRef90_A0A3D3Y0P8	86.7	9.06e-21	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2023342_58	935261.JAGL01000009_gene1175	53.9	0.00000001	Helix-turn-helix domain	N/A
Pfam	UHGV-2023342_58	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-2023342_58	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-2023342_59	K03111	137.5	1.50001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2023342_59	phrog_44	138.2	5.49996e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023342_59	UniRef90_A0A2N2CV85	170.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2023342_59	693746.OBV_19910	168.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-2023342_59	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2023342_59	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2023342_59	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2023342_59	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2023342_59	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_60	phrog_155	83.0	4.3e-24	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023342_60	UniRef90_UPI0018AC33A4	189.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-2023342_60	1497679.EP56_08440	84.0	4.35e-17	ERF superfamily	N/A
Pfam	UHGV-2023342_60	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-2023342_60	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_61	phrog_253	113.3	1.7e-33	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2023342_61	UniRef90_A0A1C5N4H2	150.0	2.41023e-43	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-2023342_61	748224.HMPREF9436_03356	112.0	2.55e-29	Siphovirus Gp157	N/A
Pfam	UHGV-2023342_61	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2023342_61	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-2023342_63	phrog_4433	57.5	4.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-2023342_63	886882.PPSC2_p0048	89.7	6.57e-18	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-2023342_63	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-2023342_63	NF007410	N/A	N/A	N/A	N/A
UniRef90	UHGV-2023342_67	UniRef90_UPI000F0633F9	57.8	0.0000000012	DNA-binding protein	N/A
eggNOG-mapper	UHGV-2023342_67	1235835.C814_03153	51.6	0.0000000644	N/A	N/A
structural_annotation	UHGV-2023342_67	PF09035,TIGR01764	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2023342	Yes	38,638	52	100	1
UHGV-0187951	No	38,446	52	100	1
UHGV-2044906	No	38,890	52	93	1
UHGV-0085821	No	32,423	52	77	1
UHGV-1396148	No	32,423	52	77	1
UHGV-1441437	No	32,248	52	77	1
UHGV-1479645	No	31,855	52	76	1