vOTU vOTU-003779

vOTU: vOTU-003779

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003779
Number of genomes	13
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00213 → vGENUS-00449 → vSUBGEN-33547 → vOTU-003779
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1353078
Biosample ID	N/A
Genome length (bp)	42,261 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	93.60%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	152	Host agreement	89.47
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-1353078_1	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_2	phrog_20016	204.2	0	N/A	unknown function
UniRef90	UHGV-1353078_2	UniRef90_A0A285PT46	198.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1353078_2	1226322.HMPREF1545_00077	169.0	0	N/A	N/A
structural_annotation	UHGV-1353078_2	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_3	phrog_16490	139.9	8.39938e-42	N/A	unknown function
eggNOG-mapper	UHGV-1353078_3	1408437.JNJN01000043_gene803	137.0	2.23e-37	N/A	N/A
PHROG	UHGV-1353078_4	phrog_22984	82.8	3.3e-24	N/A	unknown function
PHROG	UHGV-1353078_5	phrog_21718	101.5	8.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-1353078_5	397290.C810_05210	73.9	0.0000000000000135	N/A	N/A
PHROG	UHGV-1353078_6	phrog_3754	93.0	3.4e-27	N/A	unknown function
eggNOG-mapper	UHGV-1353078_6	476272.RUMHYD_01764	160.0	0	N/A	N/A
UniRef90	UHGV-1353078_7	UniRef90_A0A8D9PDQ3	119.0	7.54e-34	ECF sigma factor	N/A
structural_annotation	UHGV-1353078_7	PF08281,MF_00674,NF041727,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_8	phrog_22978	931.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1353078_8	1410650.JHWL01000003_gene2814	265.0	0	N/A	N/A
Pfam	UHGV-1353078_8	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
eggNOG-mapper	UHGV-1353078_9	1410650.JHWL01000003_gene2815	66.6	0.00000000292	N/A	N/A
UniRef90	UHGV-1353078_10	UniRef90_A0A8D9UGT1	86.3	2.07e-19	Sigma C capsid protein	N/A
PHROG	UHGV-1353078_11	phrog_511	209.0	0	internal virion protein	head and packaging
UniRef90	UHGV-1353078_11	UniRef90_A0A8D9UH72	815.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1353078_11	1226322.HMPREF1545_00785	325.0	0	N/A	N/A
structural_annotation	UHGV-1353078_11	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_12	phrog_12105	97.2	4.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-1353078_12	1226322.HMPREF1545_03850	67.0	0.00000000000121	N/A	N/A
KOfam	UHGV-1353078_13	K01448	51.7	0.000000000000013	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1353078_13	phrog_435	69.6	6.4e-20	endolysin	lysis
UniRef90	UHGV-1353078_13	UniRef90_A0A3D4EEC8	199.0	0	MurNAc-LAA domain-containing protein	N/A
eggNOG-mapper	UHGV-1353078_13	697281.Mahau_0053	100.0	1.94e-22	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-1353078_13	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1353078_13	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1353078_13	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1353078_13	PF01520,PF01471,MF_00562,TIGR02883,TIGR03979,COG0860,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_14	phrog_881	90.7	8e-27	holin	lysis
UniRef90	UHGV-1353078_14	UniRef90_UPI00189D3A4F	81.3	7.63e-19	phage holin	N/A
eggNOG-mapper	UHGV-1353078_14	742740.HMPREF9474_02251	80.1	4.07e-19	Putative phage holin Dp-1	N/A
Pfam	UHGV-1353078_14	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-1353078_14	PF16938,COG3237	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_15	phrog_4105	102.1	3.5e-30	N/A	unknown function
UniRef90	UHGV-1353078_15	UniRef90_A0A8D9UHA9	171.0	0	Holin protein	N/A
eggNOG-mapper	UHGV-1353078_15	411460.RUMTOR_01326	140.0	3.07024e-42	N/A	N/A
structural_annotation	UHGV-1353078_16	PF03426,NF033675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353078_18	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_19	phrog_15239	88.3	4e-26	N/A	unknown function
eggNOG-mapper	UHGV-1353078_19	1449126.JQKL01000003_gene1694	51.6	0.00000193	N/A	N/A
PHROG	UHGV-1353078_20	phrog_1357	261.2	0	major head protein	head and packaging
UniRef90	UHGV-1353078_20	UniRef90_A0A8D9UH64	702.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1353078_20	1449126.JQKL01000003_gene1695	416.0	0	N/A	N/A
Pfam	UHGV-1353078_20	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1353078_20	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1353078_20	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_21	phrog_13908	300.9	0	N/A	unknown function
UniRef90	UHGV-1353078_21	UniRef90_A0A844DRV7	114.0	8.24e-25	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1353078_21	1410650.JHWL01000003_gene2831	118.0	2.75e-28	N/A	N/A
UniRef90	UHGV-1353078_22	UniRef90_A0A8D9PDR6	169.0	0	YsxB-like protein	N/A
Pfam	UHGV-1353078_22	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-1353078_22	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_23	phrog_156	335.5	0	portal protein	head and packaging
UniRef90	UHGV-1353078_23	UniRef90_A0A8D9UH10	1131.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1353078_23	748224.HMPREF9436_01396	531.0	0	N/A	N/A
structural_annotation	UHGV-1353078_23	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1353078_24	K06909	121.7	7.3e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1353078_24	phrog_979	197.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-1353078_24	UniRef90_A0A8D9PDR5	950.0	0	Large subunit terminase	N/A
eggNOG-mapper	UHGV-1353078_24	748224.HMPREF9436_02548	611.0	0	Terminase-like family	N/A
Pfam	UHGV-1353078_24	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1353078_24	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1353078_24	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_25	phrog_606	78.5	9e-23	terminase small subunit	head and packaging
UniRef90	UHGV-1353078_25	UniRef90_UPI00195648BB	189.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1353078_25	397290.C810_05185	143.0	1.70006e-41	DNA-packaging protein gp3	N/A
Pfam	UHGV-1353078_25	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1353078_25	PF16677	N/A	N/A	N/A	N/A
Pfam	UHGV-1353078_26	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-1353078_27	PF06003,MF_01354,TIGR00739,COG5475	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_35	phrog_1374	57.3	2e-16	N/A	unknown function
UniRef90	UHGV-1353078_35	UniRef90_A0A2I6PFH1	62.8	0.00000000000879	Putative membrane protein	N/A
eggNOG-mapper	UHGV-1353078_35	1519439.JPJG01000059_gene1913	61.2	0.0000000000099	N/A	N/A
structural_annotation	UHGV-1353078_35	TIGR04438	N/A	N/A	N/A	N/A
KOfam	UHGV-1353078_37	K00558	122.5	4.00001e-41	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1353078_37	phrog_116	149.8	0	DNA methyltransferase	other
UniRef90	UHGV-1353078_37	UniRef90_A0A1C5KYC3	312.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1353078_37	718252.FP2_16350	297.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1353078_37	oMTase_00004	164.9	0	orphan methyltransferase	RM
Pfam	UHGV-1353078_37	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1353078_37	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1353078_39	K00571	112.7	4.3e-33	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1353078_39	phrog_67	105.3	9.2e-32	DNA methyltransferase	other
UniRef90	UHGV-1353078_39	UniRef90_A0A1C6E5W1	392.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1353078_39	749222.Nitsa_1817	372.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-1353078_39	MTase_II_00157	91.4	4.9e-27	Type II methyltransferase	RM
Pfam	UHGV-1353078_39	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-1353078_39	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-1353078_39	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353078_41	PF02767,MF_00317,TIGR00663,COG0592	N/A	N/A	N/A	N/A
KOfam	UHGV-1353078_42	K23779	63.2	6.4e-18	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-1353078_42	phrog_5823	43.6	0.0000000000041	transcriptional regulator	transcription regulation
UniRef90	UHGV-1353078_42	UniRef90_A0A3B8NIJ2	59.3	0.00000000223	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1353078_42	1151292.QEW_0953	58.5	0.000000000549	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-1353078_42	retron_type_VI_hth_cluster2_1	45.0	0.0000000000033	N/A	Retron
Pfam	UHGV-1353078_42	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1353078_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1353078_42	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1353078_45	K01160	68.1	2.3e-19	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1353078_45	phrog_34	55.2	0.0000000000000015	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353078_45	UniRef90_A0A843HIU7	143.0	1.16994e-41	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1353078_45	875454.BAEW01000002_gene491	128.0	1.1e-36	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1353078_45	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1353078_45	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1353078_45	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353078_46	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_47	phrog_15768	44.0	0.0000000000044	N/A	unknown function
UniRef90	UHGV-1353078_47	UniRef90_UPI0019563B2C	77.4	1.38e-16	N/A	N/A
eggNOG-mapper	UHGV-1353078_47	1121344.JHZO01000003_gene982	57.8	0.00000000605	N/A	N/A
Pfam	UHGV-1353078_47	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1353078_47	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-1353078_50	K03111	151.7	7.00649e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1353078_50	phrog_44	151.7	4.2039e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353078_50	UniRef90_A0A810QFR8	217.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1353078_50	693746.OBV_12860	211.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1353078_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1353078_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1353078_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1353078_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1353078_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353078_51	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_52	phrog_7566	89.9	1.9e-26	N/A	unknown function
UniRef90	UHGV-1353078_52	UniRef90_A0A8D9UHC0	172.0	0	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-1353078_52	693746.OBV_24070	113.0	1.59e-31	N/A	N/A
PHROG	UHGV-1353078_53	phrog_72	42.6	0.0000000000048	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353078_53	UniRef90_A0A8D9PDS2	311.0	0	NinB protein	N/A
eggNOG-mapper	UHGV-1353078_53	445972.ANACOL_01825	130.0	5.71e-36	N/A	N/A
structural_annotation	UHGV-1353078_53	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_54	phrog_7838	143.4	1.49939e-42	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353078_54	UniRef90_A0A8D9UGW3	337.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1353078_54	742767.HMPREF9456_02052	187.0	0	N/A	N/A
structural_annotation	UHGV-1353078_54	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-1353078_55	phrog_253	91.1	1.4e-26	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1353078_55	UniRef90_A0A8D9PDS3	254.0	0	Resistance protein	N/A
eggNOG-mapper	UHGV-1353078_55	748224.HMPREF9436_03356	110.0	1.45e-28	Siphovirus Gp157	N/A
Pfam	UHGV-1353078_55	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-1353078_55	PF05565	N/A	N/A	N/A	N/A
UniRef90	UHGV-1353078_59	UniRef90_A0A8D9PDM8	134.0	6.54e-40	Pyocin activator protein	N/A
UniRef90	UHGV-1353078_60	UniRef90_A0A8D9PDN2	128.0	1.28e-37	DNA-binding protein	N/A
structural_annotation	UHGV-1353078_60	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1353078_61	PF13601,MF_01819,TIGR02337,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-1353078_62	UniRef90_A0A8D9UHB1	146.0	1.55544e-43	Repressor protein CI	N/A
eggNOG-mapper	UHGV-1353078_62	1507.HMPREF0262_00424	58.5	0.00000000136	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1353078_62	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1353078_62	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1353078_62	PF12844,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1353078_65	UniRef90_A0A8D9UHA6	85.9	2.69e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-1353078_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1353078_65	PF12844,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1353078_66	K14059	151.5	9.80909e-45	int; integrase	N/A
PHROG	UHGV-1353078_66	phrog_1	169.4	0	integrase	integration and excision
UniRef90	UHGV-1353078_66	UniRef90_A0A8D9UGU2	650.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1353078_66	693746.OBV_41260	302.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1353078_66	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1353078_66	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1353078_66	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1353078	Yes	42,261	57	100	1
UHGV-0131186	No	42,261	57	100	1
UHGV-0118776	No	41,022	57	100	1
UHGV-0385851	No	41,022	57	100	1
UHGV-0084309	No	41,739	57	98	1
UHGV-1445618	No	26,658	58	63	1
UHGV-1407852	No	25,285	55	59	1
UHGV-1786890	No	20,857	58	49	1
UHGV-1722902	No	20,067	55	47	1
UHGV-1703148	No	19,981	58	47	1
UHGV-1607205	No	18,311	56	43	1
UHGV-1615612	No	12,186	55	29	1
UHGV-1789452	No	11,147	60	26	1