vOTU vOTU-003892

vOTU: vOTU-003892

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003892
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00556 → vGENUS-02008 → vSUBGEN-28931 → vOTU-003892
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0176393
Biosample ID	N/A
Genome length (bp)	43,500 bps
CheckV completeness	100.00% (Complete)
CDS count	51
CDS density	96.01%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	53	Host agreement	77.36
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0176393_1	K21919	60.9	1.7e-17	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0176393_1	phrog_7713	68.2	2.2e-24	N/A	unknown function
Pfam	UHGV-0176393_1	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
COG	UHGV-0176393_1	COG1357	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176393_1	PF13599,NF000139	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_4	phrog_824	136.9	6.70003e-41	N/A	unknown function
UniRef90	UHGV-0176393_4	UniRef90_UPI00189BCDD7	142.0	2.18e-41	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0176393_4	1408428.JNJP01000030_gene973	114.0	3.71e-30	VRR_NUC	N/A
PHROG	UHGV-0176393_6	phrog_8489	165.0	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0176393_6	1415774.U728_867	124.0	1.45e-30	DnaD domain protein	N/A
COG	UHGV-0176393_6	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0176393_7	K07455	173.2	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0176393_7	phrog_148	176.8	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176393_7	UniRef90_UPI000F05C9E1	305.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-0176393_7	1243664.CAVL020000020_gene3198	182.0	0	RecT family	N/A
Pfam	UHGV-0176393_7	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0176393_7	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0176393_7	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0176393_7	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_8	phrog_434	304.0	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176393_8	UniRef90_A0A3D3XZF3	369.0	0	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0176393_8	1121344.JHZO01000003_gene985	295.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0176393_8	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0176393_8	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0176393_8	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0176393_8	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_12	phrog_2113	57.4	2e-16	N/A	unknown function
eggNOG-mapper	UHGV-0176393_13	1235835.C814_03153	64.3	0.000000000000954	N/A	N/A
structural_annotation	UHGV-0176393_13	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176393_14	UniRef90_UPI001B1B66C7	72.4	0.00000000000000336	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176393_14	1111454.HMPREF1250_1029	61.2	0.000000000011	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0176393_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0176393_14	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0176393_15	K22300	70.8	2.7e-20	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0176393_15	phrog_8	73.1	5.8e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176393_15	UniRef90_A0A8B2X256	89.4	8.33e-21	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176393_15	1462526.BN990_03843	76.6	9.22e-17	Helix-turn-helix domain	N/A
PADLOC	UHGV-0176393_15	retron_type_VI_hth_cluster2_1	55.3	0.0000000000000016	N/A	Retron
Pfam	UHGV-0176393_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0176393_15	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176393_15	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
NCBIFam	UHGV-0176393_18	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
Pfam	UHGV-0176393_19	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0176393_19	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0176393_20	K14059	98.8	8.6e-29	int; integrase	N/A
PHROG	UHGV-0176393_20	phrog_1	126.9	1.7e-37	integrase	integration and excision
UniRef90	UHGV-0176393_20	UniRef90_UPI00195CC1EE	450.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0176393_20	411471.SUBVAR_05816	120.0	2.98e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0176393_20	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0176393_20	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0176393_20	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176393_21	UniRef90_A0A843GWV6	86.3	6.98e-20	Rubrerythrin domain-containing protein	N/A
Pfam	UHGV-0176393_21	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
structural_annotation	UHGV-0176393_21	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176393_22	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_24	phrog_22984	42.5	0.000000000012	N/A	unknown function
structural_annotation	UHGV-0176393_25	PF20477,NF033819	N/A	N/A	N/A	N/A
UniRef90	UHGV-0176393_26	UniRef90_A0A8D9PDT6	86.3	2.43e-20	Transcriptional regulatory protein	N/A
PHROG	UHGV-0176393_27	phrog_1129	69.5	3.4e-20	holin	lysis
UniRef90	UHGV-0176393_27	UniRef90_A0A2V2CUX8	127.0	1.69e-36	Enolase	N/A
eggNOG-mapper	UHGV-0176393_27	1226322.HMPREF1545_00069	117.0	1.45e-33	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0176393_27	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0176393_27	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_28	phrog_937	62.9	6e-18	hemolysin	other
eggNOG-mapper	UHGV-0176393_28	1519439.JPJG01000023_gene533	86.7	6.69e-21	N/A	N/A
PHROG	UHGV-0176393_29	phrog_1493	56.4	6.5e-16	endolysin	lysis
UniRef90	UHGV-0176393_29	UniRef90_A0A1C6GMR6	200.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-0176393_29	394503.Ccel_3272	121.0	7.08e-31	NLP P60 protein	N/A
Pfam	UHGV-0176393_29	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0176393_29	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0176393_29	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
KOfam	UHGV-0176393_30	K01104	45.8	0.00000000000058	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
UniRef90	UHGV-0176393_30	UniRef90_UPI001BF10870	174.0	3.29305e-43	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-0176393_30	610130.Closa_0587	73.9	0.00000000000666	Tyrosine phosphatase family	N/A
Pfam	UHGV-0176393_30	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-0176393_30	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-0176393_30	PF13350,TIGR01244,COG2365	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_32	phrog_22978	391.0	0	N/A	unknown function
eggNOG-mapper	UHGV-0176393_32	1123288.SOV_4c02780	1176.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-0176393_32	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-0176393_32	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
COG	UHGV-0176393_32	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
eggNOG-mapper	UHGV-0176393_33	1410650.JHWL01000003_gene2815	133.0	1.34e-32	N/A	N/A
PHROG	UHGV-0176393_34	phrog_372	116.8	2.4e-34	tail protein	tail
UniRef90	UHGV-0176393_34	UniRef90_UPI001EDDCD01	111.0	5.61e-22	N/A	N/A
eggNOG-mapper	UHGV-0176393_34	553973.CLOHYLEM_06931	79.0	0.000000000000233	tail collar domain protein	N/A
Pfam	UHGV-0176393_34	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-0176393_34	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0176393_34	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_36	phrog_511	239.2	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0176393_36	1410650.JHWL01000003_gene2827	322.0	0	N/A	N/A
structural_annotation	UHGV-0176393_36	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_37	phrog_12105	120.5	8.6e-36	N/A	unknown function
eggNOG-mapper	UHGV-0176393_37	1519439.JPJG01000060_gene1891	64.3	0.0000000000162	N/A	N/A
PHROG	UHGV-0176393_38	phrog_15239	60.1	3.4e-17	N/A	unknown function
PHROG	UHGV-0176393_39	phrog_1357	271.6	0	major head protein	head and packaging
UniRef90	UHGV-0176393_39	UniRef90_A0A2V2GQW4	427.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0176393_39	748224.HMPREF9436_01399	369.0	0	N/A	N/A
Pfam	UHGV-0176393_39	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0176393_39	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0176393_39	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_40	phrog_13908	295.2	0	N/A	unknown function
eggNOG-mapper	UHGV-0176393_40	1410650.JHWL01000003_gene2831	149.0	4.08001e-40	N/A	N/A
KOfam	UHGV-0176393_41	K07584	48.8	0.00000000000014	N/A	N/A
PHROG	UHGV-0176393_41	phrog_4478	40.3	0.000000000037	peptidase	other
eggNOG-mapper	UHGV-0176393_41	1009370.ALO_08023	55.8	0.0000000184	Cysteine protease Prp	N/A
Pfam	UHGV-0176393_41	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-0176393_41	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176393_41	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_42	phrog_156	284.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0176393_42	1410650.JHWL01000003_gene2833	519.0	0	N/A	N/A
structural_annotation	UHGV-0176393_42	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0176393_43	K06909	162.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0176393_43	phrog_979	151.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0176393_43	UniRef90_A0A3C0NMI6	671.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-0176393_43	1410650.JHWL01000003_gene2834	643.0	0	N/A	N/A
Pfam	UHGV-0176393_43	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0176393_43	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0176393_43	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0176393_49	phrog_22740	57.4	2.9e-16	N/A	unknown function
UniRef90	UHGV-0176393_49	UniRef90_UPI001E288665	67.4	0.000000000000334	phage N-6-adenine-methyltransferase	N/A
eggNOG-mapper	UHGV-0176393_49	760568.Desku_0784	73.6	8.7e-16	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0176393_49	oMTase_00015	49.6	0.00000000000014	orphan methyltransferase	RM
Pfam	UHGV-0176393_49	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
KOfam	UHGV-0176393_50	K00390	107.3	1.5e-31	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0176393_50	phrog_424	134.1	8.20001e-40	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0176393_50	UniRef90_UPI00164AFBC1	366.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0176393_50	1408437.JNJN01000032_gene2312	351.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0176393_50	BrxP_00001	68.2	2.2e-20	BrxP	BREX
Pfam	UHGV-0176393_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0176393_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0176393_50	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
KOfam	UHGV-0176393_51	K21919	173.4	0	KCTD9; BTB/POZ domain-containing protein KCTD9	N/A
PHROG	UHGV-0176393_51	phrog_923	92.6	2.20004e-41	N/A	unknown function
Pfam	UHGV-0176393_51	PF00805	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide
structural_annotation	UHGV-0176393_51	PF13599,NF000421,COG1357	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0176393	Yes	43,500	55	100	1
UHGV-0177455	No	42,867	55	100	1
UHGV-0212683	No	43,563	55	100	1
UHGV-0151102	No	42,124	55	98	1
UHGV-1517125	No	40,602	55	94	1
UHGV-1436418	No	29,075	56	67	1
UHGV-1568423	No	12,002	54	28	1