vOTU vOTU-003901

vOTU: vOTU-003901

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003901
Number of genomes	11
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00707 → vGENUS-01662 → vSUBGEN-23152 → vOTU-003901
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2129321
Biosample ID	SAMEA3449219
Genome length (bp)	42,167 bps
CheckV completeness	100.00% (Complete)
CDS count	53
CDS density	92.60%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	62	Host agreement	74.19
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-103 → CAG-103 sp900543625	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-2129321_1	phrog_1357	276.8	0	major head protein	head and packaging
UniRef90	UHGV-2129321_1	UniRef90_A0A2V2GQW4	380.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-2129321_1	748224.HMPREF9436_01399	355.0	0	N/A	N/A
Pfam	UHGV-2129321_1	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-2129321_1	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-2129321_1	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_2	phrog_13908	255.6	0	N/A	unknown function
UniRef90	UHGV-2129321_2	UniRef90_UPI0012DFC3C8	120.0	1.67e-27	ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-2129321_2	1410650.JHWL01000003_gene2831	110.0	1.78e-25	N/A	N/A
KOfam	UHGV-2129321_3	K07584	51.6	0.000000000000016	N/A	N/A
PHROG	UHGV-2129321_3	phrog_4478	50.9	0.000000000000022	peptidase	other
UniRef90	UHGV-2129321_3	UniRef90_UPI0015B63E39	56.6	0.0000000534	ribosomal-processing cysteine protease Prp	N/A
Pfam	UHGV-2129321_3	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-2129321_3	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129321_3	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_4	phrog_156	339.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-2129321_4	1410650.JHWL01000003_gene2833	611.0	0	N/A	N/A
structural_annotation	UHGV-2129321_4	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-2129321_5	K06909	141.7	6.60012e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2129321_5	phrog_979	139.9	5.70328e-43	terminase large subunit	head and packaging
UniRef90	UHGV-2129321_5	UniRef90_A0A810Q5R0	649.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-2129321_5	1410650.JHWL01000003_gene2834	609.0	0	N/A	N/A
Pfam	UHGV-2129321_5	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-2129321_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2129321_5	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-2129321_6	UniRef90_UPI00141260EC	129.0	3.97e-36	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-2129321_6	1226322.HMPREF1545_00042	111.0	1.45e-29	N/A	N/A
UniRef90	UHGV-2129321_8	UniRef90_A0A4Q3LWZ5	47.8	0.00000383	Toxin-antitoxin system HicB family antitoxin	N/A
KOfam	UHGV-2129321_10	K22300	60.4	3.6e-17	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-2129321_10	phrog_2967	45.3	0.0000000000014	transcriptional regulator	transcription regulation
UniRef90	UHGV-2129321_10	UniRef90_A0A810Q5N3	134.0	3.88e-38	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-2129321_10	748224.HMPREF9436_01444	112.0	4.48e-30	N/A	N/A
Pfam	UHGV-2129321_10	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2129321_10	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2129321_10	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129321_14	PF13384	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_15	phrog_997	102.1	3.8e-30	replication terminator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129321_15	UniRef90_R6MCS9	95.1	6.18e-23	N/A	N/A
eggNOG-mapper	UHGV-2129321_15	1203606.HMPREF1526_01889	119.0	2.21e-33	replication terminator protein, phage associated	N/A
PHROG	UHGV-2129321_16	phrog_1029	158.2	0	N/A	unknown function
UniRef90	UHGV-2129321_16	UniRef90_H6LCD3	96.3	1.67e-20	Phage-like protein	N/A
eggNOG-mapper	UHGV-2129321_16	756499.Desde_1052	100.0	1.09e-22	N/A	N/A
structural_annotation	UHGV-2129321_16	PF10065,COG5532	N/A	N/A	N/A	N/A
Pfam	UHGV-2129321_18	PF13248	N/A	N/A	zinc-ribbon domain	zf-ribbon_3
UniRef90	UHGV-2129321_19	UniRef90_A0A845QLQ8	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-2129321_19	33035.JPJF01000135_gene5082	123.0	2.11e-32	N/A	N/A
Pfam	UHGV-2129321_19	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-2129321_19	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
UniRef90	UHGV-2129321_20	UniRef90_B0PAM4	142.0	2.47e-39	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-2129321_20	PF09588,TIGR04328,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_21	phrog_72	55.9	6.3e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129321_21	UniRef90_UPI001F3F3E5C	162.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-2129321_21	411470.RUMGNA_02194	86.3	9.7e-19	N/A	N/A
structural_annotation	UHGV-2129321_21	PF05772,NF007281	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129321_22	PF12844,MF_00535,NF041951,COG5499	N/A	N/A	N/A	N/A
KOfam	UHGV-2129321_23	K03111	148.7	5.32493e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2129321_23	phrog_44	147.6	6.44597e-44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129321_23	UniRef90_A0A810QFR8	202.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2129321_23	1007096.BAGW01000023_gene151	200.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-2129321_23	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2129321_23	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2129321_23	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2129321_23	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2129321_23	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_24	phrog_270	95.6	6.5e-28	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-2129321_24	1449126.JQKL01000046_gene2061	108.0	2.5e-25	N/A	N/A
structural_annotation	UHGV-2129321_24	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-2129321_25	K01160	47.4	0.00000000000048	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-2129321_25	phrog_4632	55.2	4e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2129321_25	UniRef90_A0A7X8IB41	113.0	3.95e-30	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-2129321_25	469604.HMPREF0946_00819	55.1	0.0000000519	N/A	N/A
structural_annotation	UHGV-2129321_25	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_27	phrog_38832	41.1	0.0000000000032	N/A	unknown function
KOfam	UHGV-2129321_28	K00571	126.6	2.4e-37	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-2129321_28	phrog_67	108.7	2.5e-32	DNA methyltransferase	other
UniRef90	UHGV-2129321_28	UniRef90_A0A2U1CFM2	416.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-2129321_28	658655.HMPREF0988_00878	375.0	0	DNA methylase	N/A
PADLOC	UHGV-2129321_28	MTase_II_00157	96.1	6e-28	Type II methyltransferase	RM
Pfam	UHGV-2129321_28	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-2129321_28	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2129321_28	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2129321_29	445972.ANACOL_00168	56.2	0.00000000125	N/A	N/A
eggNOG-mapper	UHGV-2129321_34	445972.ANACOL_00168	58.2	0.00000000027	N/A	N/A
UniRef90	UHGV-2129321_35	UniRef90_A0A8D9UHA6	86.3	2.33e-18	Helix-turn-helix XRE-family like protein	N/A
Pfam	UHGV-2129321_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-2129321_35	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-2129321_35	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-2129321_36	K06400	287.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-2129321_36	phrog_95	296.7	0	integrase	integration and excision
UniRef90	UHGV-2129321_36	UniRef90_A0A3A9I9T1	336.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-2129321_36	357809.Cphy_2997	287.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-2129321_36	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-2129321_36	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-2129321_36	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-2129321_36	PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-2129321_37	UniRef90_A0A8F0WD75	70.9	0.00000000000354	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-2129321_37	1408437.JNJN01000043_gene801	73.9	0.0000000000000435	N/A	N/A
structural_annotation	UHGV-2129321_38	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_39	phrog_16490	51.0	0.000000000000029	N/A	unknown function
eggNOG-mapper	UHGV-2129321_39	641112.ACOK01000103_gene525	108.0	1.31e-26	N/A	N/A
PHROG	UHGV-2129321_43	phrog_22978	793.4	0	N/A	unknown function
UniRef90	UHGV-2129321_43	UniRef90_A0A1Y4WLF7	890.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-2129321_43	1410650.JHWL01000003_gene2814	481.0	0	N/A	N/A
Pfam	UHGV-2129321_43	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
eggNOG-mapper	UHGV-2129321_44	1410650.JHWL01000003_gene2815	153.0	5.74e-40	N/A	N/A
KOfam	UHGV-2129321_45	K01447	89.5	5.2e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2129321_45	phrog_1493	165.3	0	endolysin	lysis
UniRef90	UHGV-2129321_45	UniRef90_A0A350TLR9	215.0	0	Peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-2129321_45	1504823.CCMM01000008_gene1019	177.0	0	Ami_2	N/A
Pfam	UHGV-2129321_45	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-2129321_45	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-2129321_45	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
structural_annotation	UHGV-2129321_45	PF01510,PF01471,MF_04111,NF008758,COG3023	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_46	phrog_199	80.2	2e-23	holin	lysis
UniRef90	UHGV-2129321_46	UniRef90_UPI001BEFC888	214.0	0	Phage holin family protein	N/A
eggNOG-mapper	UHGV-2129321_46	1160721.RBI_I01565	144.0	3.29025e-42	Bacteriophage holin family	N/A
Pfam	UHGV-2129321_46	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-2129321_46	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-2129321_46	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-2129321_46	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-2129321_47	K01104	45.7	0.0000000000003	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	N/A
UniRef90	UHGV-2129321_47	UniRef90_UPI001BF10870	202.0	0	Tyrosine-protein phosphatase	N/A
eggNOG-mapper	UHGV-2129321_47	610130.Closa_0587	75.1	0.00000000000267	Tyrosine phosphatase family	N/A
Pfam	UHGV-2129321_47	PF13350	N/A	N/A	Tyrosine phosphatase family	Y_phosphatase3
COG	UHGV-2129321_47	COG2365	N/A	N/A	Protein tyrosine/serine phosphatase Oca4	N/A
structural_annotation	UHGV-2129321_47	PF13350,TIGR01244,COG2365	N/A	N/A	N/A	N/A
UniRef90	UHGV-2129321_48	UniRef90_R7EKY5	100.0	1.1e-21	Collagen triple helix repeat (20 copies)	N/A
structural_annotation	UHGV-2129321_48	PF10651,NF041074	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_49	phrog_372	277.3	0	tail protein	tail
UniRef90	UHGV-2129321_49	UniRef90_UPI001373A0FD	218.0	0	N/A	N/A
eggNOG-mapper	UHGV-2129321_49	1235802.C823_05263	191.0	0	N/A	N/A
Pfam	UHGV-2129321_49	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-2129321_49	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-2129321_49	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2129321_50	NF038340	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_51	phrog_511	217.5	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-2129321_51	1410650.JHWL01000003_gene2827	361.0	0	N/A	N/A
structural_annotation	UHGV-2129321_51	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-2129321_52	phrog_12105	123.1	1.3e-36	N/A	unknown function
eggNOG-mapper	UHGV-2129321_52	1226322.HMPREF1545_03850	82.8	1.1e-18	N/A	N/A
PHROG	UHGV-2129321_53	phrog_15239	49.5	0.000000000000061	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2129321	Yes	42,167	59	100	1
UHGV-0087658	No	42,167	59	100	1
UHGV-1360386	No	42,167	59	100	1
UHGV-0072905	No	40,464	59	94	1
UHGV-1379028	No	39,373	59	91	1
UHGV-1382566	No	39,351	59	91	1
UHGV-0191867	No	36,657	59	85	1
UHGV-1489957	No	36,657	59	85	1
UHGV-2003651	No	22,583	58	52	1
UHGV-1750139	No	20,501	60	48	1
UHGV-1708342	No	20,126	58	47	1