vOTU vOTU-003972

vOTU: vOTU-003972

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003972
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00226 → vGENUS-00138 → vSUBGEN-00146 → vOTU-003972
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0375245
Biosample ID	SAMEA3497897
Genome length (bp)	45,684 bps
CheckV completeness	100.00% (Complete)
CDS count	63
CDS density	91.56%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	523	Host agreement	78.2
PHIST-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Acidaminococcales → Acidaminococcaceae → Phascolarctobacterium_A → Phascolarctobacterium_A succinatutens	Total connections	17	Host agreement	94.12

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0375245_2	phrog_10475	44.4	0.0000000000012	endolysin	lysis
UniRef90	UHGV-0375245_2	UniRef90_A0A1Q6RQM5	1226.0	0	SLT domain-containing protein	N/A
eggNOG-mapper	UHGV-0375245_2	1123288.SOV_2c10740	193.0	0	N/A	N/A
Pfam	UHGV-0375245_2	PF01464	N/A	N/A	Transglycosylase SLT domain	SLT
structural_annotation	UHGV-0375245_2	PF01464,COG0741	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_3	phrog_418	126.1	9.2e-38	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0375245_3	568816.Acin_1826	101.0	1.09e-23	N/A	N/A
structural_annotation	UHGV-0375245_3	PF16789,TIGR02971,COG3524	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_4	phrog_308	105.8	3.7e-31	internal virion protein	head and packaging
structural_annotation	UHGV-0375245_4	PF13420,MF_02210,NF011709,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_5	phrog_376	610.0	0	tail protein	tail
UniRef90	UHGV-0375245_5	UniRef90_A0A0U1KV93	357.0	0	N/A	N/A
eggNOG-mapper	UHGV-0375245_5	568816.Acin_1828	677.0	0	N/A	N/A
Pfam	UHGV-0375245_5	PF21722	N/A	N/A	Glycine-rich domain	Gly_rich_2
structural_annotation	UHGV-0375245_5	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_6	phrog_394	156.5	0	tail protein	tail
UniRef90	UHGV-0375245_6	UniRef90_A0A0U1KW64	125.0	9.16e-33	N/A	N/A
eggNOG-mapper	UHGV-0375245_6	1123288.SOV_1c10710	125.0	1.54e-33	N/A	N/A
structural_annotation	UHGV-0375245_6	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_7	phrog_427	65.1	1.2e-18	N/A	unknown function
structural_annotation	UHGV-0375245_7	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_8	phrog_212	206.2	0	major head protein	head and packaging
UniRef90	UHGV-0375245_8	UniRef90_A0A6J5KPX9	218.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0375245_8	568816.Acin_1831	352.0	0	N/A	N/A
Pfam	UHGV-0375245_8	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0375245_8	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_9	phrog_458	154.5	1.4013e-45	protease	other
eggNOG-mapper	UHGV-0375245_9	568816.Acin_1832	97.1	5.54e-22	N/A	N/A
PHROG	UHGV-0375245_10	phrog_528	105.7	1.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-0375245_10	1401067.HMPREF0872_06805	94.0	3.39e-23	N/A	N/A
PHROG	UHGV-0375245_11	phrog_332	433.9	0	head-tail adaptor	connector
UniRef90	UHGV-0375245_11	UniRef90_UPI001F3F9DD9	538.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0375245_11	568816.Acin_1834	597.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0375245_11	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0375245_11	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0375245_13	K06909	86.6	4e-25	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0375245_13	phrog_2	161.5	0	terminase large subunit	head and packaging
UniRef90	UHGV-0375245_13	UniRef90_UPI001D00EC11	401.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0375245_13	568816.Acin_1836	417.0	0	Terminase RNaseH-like domain	N/A
Pfam	UHGV-0375245_13	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0375245_13	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0375245_13	PF03237,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375245_15	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375245_16	PF13983	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_17	phrog_3754	72.5	7.4e-21	N/A	unknown function
UniRef90	UHGV-0375245_17	UniRef90_R6WLL6	324.0	0	Cytochrome c domain-containing protein	N/A
eggNOG-mapper	UHGV-0375245_17	397290.C810_05204	57.4	0.0000000467	N/A	N/A
KOfam	UHGV-0375245_19	K03111	55.3	0.0000000000000021	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0375245_19	phrog_44	60.8	4.2e-17	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375245_19	UniRef90_A0A1Q6RQK6	248.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0375245_19	411471.SUBVAR_05834	63.2	0.0000000000917	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0375245_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0375245_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0375245_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0375245_19	PF00436,MF_00984,TIGR00621,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0375245_20	K01160	60.0	7.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0375245_20	phrog_140	135.5	2.9e-40	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375245_20	UniRef90_A0A316S9J1	145.0	6.13068e-42	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0375245_20	743719.PaelaDRAFT_5642	126.0	1.55e-35	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0375245_20	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0375245_20	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0375245_20	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_24	phrog_3878	54.3	0.0000000000000024	N/A	unknown function
structural_annotation	UHGV-0375245_24	PF19607	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375245_25	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_26	phrog_12728	150.2	4.2039e-45	N/A	unknown function
UniRef90	UHGV-0375245_26	UniRef90_A0A516KMW1	77.8	2.66e-16	Putative membrane lipoprotein	N/A
eggNOG-mapper	UHGV-0375245_26	742765.HMPREF9457_02125	71.2	0.0000000000000159	N/A	N/A
KOfam	UHGV-0375245_27	K00558	72.2	6.7e-21	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0375245_27	phrog_116	91.8	6.7e-27	DNA methyltransferase	other
UniRef90	UHGV-0375245_27	UniRef90_A0A1Q6RAH0	349.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0375245_27	610130.Closa_3545	184.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-0375245_27	oMTase_00023	74.1	5.04467e-44	orphan methyltransferase	RM
Pfam	UHGV-0375245_27	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0375245_27	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0375245_28	K00558	184.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0375245_28	phrog_116	202.8	0	DNA methyltransferase	other
UniRef90	UHGV-0375245_28	UniRef90_UPI0018D4ED7F	319.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0375245_28	411460.RUMTOR_00462	260.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0375245_28	MTase_II_00058	213.5	0	Type II methyltransferase	RM
Pfam	UHGV-0375245_28	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0375245_28	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0375245_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0375245_28	PF00145,MF_00786,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_31	phrog_5968	151.4	4.2039e-45	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375245_31	UniRef90_R6WTP4	194.0	0	N-terminal phage replisome organizer	N/A
eggNOG-mapper	UHGV-0375245_31	1211817.CCAT010000007_gene1058	127.0	2.65e-32	N-terminal phage replisome organiser (Phage_rep_org_N)	N/A
Pfam	UHGV-0375245_31	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
NCBIFam	UHGV-0375245_31	TIGR01714.1	N/A	N/A	phage replisome organizer, putative, N-terminal region	N/A
COG	UHGV-0375245_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0375245_31	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0375245_33	K07455	179.0	0	recT; recombination protein RecT	N/A
PHROG	UHGV-0375245_33	phrog_148	180.9	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375245_33	UniRef90_R6XVK6	385.0	0	Putative phage RecT family protein	N/A
eggNOG-mapper	UHGV-0375245_33	1234664.AMRO01000024_gene1791	169.0	0	RecT family	N/A
Pfam	UHGV-0375245_33	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0375245_33	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-0375245_33	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0375245_33	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-0375245_34	UniRef90_R6WLK2	127.0	8.65e-37	Conserved domain protein	N/A
Pfam	UHGV-0375245_34	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0375245_34	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0375245_34	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_35	phrog_434	332.7	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0375245_35	UniRef90_R6WGP6	597.0	0	Putative phage-type endonuclease	N/A
eggNOG-mapper	UHGV-0375245_35	706434.HMPREF9429_00551	361.0	0	YqaJ viral recombinase family protein	N/A
Pfam	UHGV-0375245_35	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-0375245_35	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-0375245_35	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0375245_35	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_37	phrog_14367	53.7	0.0000000000000016	N/A	unknown function
UniRef90	UHGV-0375245_37	UniRef90_R6WTN1	174.0	0	Peptidoglycan-binding LysM	N/A
eggNOG-mapper	UHGV-0375245_37	1380763.BG53_13885	50.4	0.00000114	Lysin motif	N/A
Pfam	UHGV-0375245_37	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0375245_37	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0375245_37	MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0375245_38	NF041909	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_39	phrog_6058	77.0	1.6e-22	N/A	unknown function
UniRef90	UHGV-0375245_39	UniRef90_A0A0U9H7T0	57.8	0.00000000162	Modification methylase SinI	N/A
eggNOG-mapper	UHGV-0375245_39	1280689.AUJC01000011_gene1497	67.0	0.0000000000000688	N/A	N/A
structural_annotation	UHGV-0375245_39	PF12728,TIGR01764	N/A	N/A	N/A	N/A
KOfam	UHGV-0375245_42	K18830	49.0	0.00000000000015	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
UniRef90	UHGV-0375245_42	UniRef90_R6X1Y8	179.0	0	Helix-turn-helix domain protein	N/A
eggNOG-mapper	UHGV-0375245_42	641107.CDLVIII_1309	91.7	2.87e-22	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0375245_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0375245_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0375245_42	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0375245_43	UniRef90_R6XVI4	387.0	0	Inner membrane protein YhaI	N/A
eggNOG-mapper	UHGV-0375245_43	585503.HMPREF7545_0288	68.2	0.0000000000108	Membrane	N/A
Pfam	UHGV-0375245_43	PF05656	N/A	N/A	N/A	DUF805
COG	UHGV-0375245_43	COG3152	N/A	N/A	N/A	N/A
KOfam	UHGV-0375245_44	K14059	131.5	1.2e-38	int; integrase	N/A
PHROG	UHGV-0375245_44	phrog_1	143.2	2.59941e-42	integrase	integration and excision
UniRef90	UHGV-0375245_44	UniRef90_R6X1Y3	666.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0375245_44	1123250.KB908381_gene1631	338.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0375245_44	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0375245_44	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0375245_44	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0375245_45	1378168.N510_03079	56.6	0.000000188	N/A	N/A
structural_annotation	UHGV-0375245_46	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_47	phrog_16490	87.9	3.7e-26	N/A	unknown function
eggNOG-mapper	UHGV-0375245_47	445972.ANACOL_01880	84.0	1.26e-16	N/A	N/A
eggNOG-mapper	UHGV-0375245_48	476272.RUMHYD_01953	49.7	0.00000062	N/A	N/A
PHROG	UHGV-0375245_49	phrog_21718	44.0	0.000000000004	N/A	unknown function
UniRef90	UHGV-0375245_50	UniRef90_A0A316S6W0	102.0	8.78e-27	HTH luxR-type domain-containing protein	N/A
Pfam	UHGV-0375245_50	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
COG	UHGV-0375245_50	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0375245_50	PF08281,MF_00674,NF001073,COG2739	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0375245_53	1392502.JNIO01000008_gene1280	223.0	0	N/A	N/A
structural_annotation	UHGV-0375245_53	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_54	phrog_918	102.1	2.7e-30	N/A	unknown function
UniRef90	UHGV-0375245_54	UniRef90_UPI000EC62F11	154.0	0	N/A	N/A
eggNOG-mapper	UHGV-0375245_54	411902.CLOBOL_05677	141.0	5.77335e-43	N/A	N/A
Pfam	UHGV-0375245_54	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0375245_54	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_55	phrog_872	86.3	3.9e-25	N/A	unknown function
UniRef90	UHGV-0375245_55	UniRef90_UPI0014125E01	122.0	1.54e-34	N/A	N/A
eggNOG-mapper	UHGV-0375245_55	1519439.JPJG01000060_gene1880	120.0	3.12e-32	N/A	N/A
Pfam	UHGV-0375245_55	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0375245_55	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0375245_55	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_57	phrog_4105	58.7	9.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0375245_57	33035.JPJF01000043_gene996	61.2	0.0000000000469	N/A	N/A
PHROG	UHGV-0375245_59	phrog_1141	61.5	1.1e-17	tail fiber protein	tail
UniRef90	UHGV-0375245_59	UniRef90_A0A1Q6R2G9	143.0	3.67e-41	N/A	N/A
eggNOG-mapper	UHGV-0375245_59	556269.ACDQ01000006_gene1645	67.4	0.00000000000699	N/A	N/A
Pfam	UHGV-0375245_59	PF14301	N/A	N/A	N/A	DUF4376
structural_annotation	UHGV-0375245_59	PF14301	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_60	phrog_1640	59.4	8e-17	tail protein	tail
eggNOG-mapper	UHGV-0375245_60	556269.ACDQ01000006_gene1705	98.2	5.17e-19	Phage Tail Collar Domain	N/A
COG	UHGV-0375245_60	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0375245_60	PF03906,NF012201,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-0375245_62	phrog_9880	347.5	0	N/A	unknown function
UniRef90	UHGV-0375245_62	UniRef90_A0A412X674	716.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0375245_62	626887.J057_01640	148.0	6.86e-33	N/A	N/A
PHROG	UHGV-0375245_63	phrog_9880	159.7	0	N/A	unknown function
UniRef90	UHGV-0375245_63	UniRef90_A0A1Q6RQR6	2152.0	0	LPD3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0375245_63	1123288.SOV_1c10750	189.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0375245_63	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0375245	Yes	45,684	45	100	1
UHGV-0785399	No	45,692	45	100	1
UHGV-0792913	No	44,198	45	95	1
UHGV-0842529	No	40,680	45	87	1
UHGV-0350701	No	13,981	47	30	1