vOTU vOTU-003988

vOTU: vOTU-003988

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-003988
Number of genomes	9
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00868 → vGENUS-03697 → vSUBGEN-03224 → vOTU-003988
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170
Host range breadth	Genus
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0876985
Biosample ID	SAMN04415497
Genome length (bp)	41,925 bps
CheckV completeness	100.00% (Complete)
CDS count	43
CDS density	95.43%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Bariatricus → Bariatricus comes_A	Total connections	4	Host agreement	75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	27	Host agreement	74.07

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0876985_2	phrog_3584	239.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0876985_2	1519439.JPJG01000060_gene1883	316.0	0	N/A	N/A
structural_annotation	UHGV-0876985_2	PF21578,NF033538	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_3	phrog_190	115.2	4.7e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0876985_3	UniRef90_UPI001485DBB0	164.0	0	N/A	N/A
eggNOG-mapper	UHGV-0876985_3	693746.OBV_25250	135.0	1.09e-38	N/A	N/A
Pfam	UHGV-0876985_3	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0876985_3	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_4	phrog_27610	61.9	5.8e-18	N/A	unknown function
structural_annotation	UHGV-0876985_4	PF09465,COG5475	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0876985_5	1226322.HMPREF1545_00288	122.0	6.54e-35	N/A	N/A
PHROG	UHGV-0876985_6	phrog_606	75.2	8.6e-22	terminase small subunit	head and packaging
UniRef90	UHGV-0876985_6	UniRef90_A0A191ZDI3	69.7	0.00000000000377	Putative terminase small subunit	N/A
eggNOG-mapper	UHGV-0876985_6	1226322.HMPREF1545_03842	140.0	8.26e-40	DNA-packaging protein gp3	N/A
Pfam	UHGV-0876985_6	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0876985_6	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0876985_7	K06909	234.8	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0876985_7	phrog_3717	205.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0876985_7	UniRef90_H7BW36	851.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0876985_7	1519439.JPJG01000060_gene1885	645.0	0	phage Terminase large subunit	N/A
Pfam	UHGV-0876985_7	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
NCBIFam	UHGV-0876985_7	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0876985_7	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0876985_7	PF04466,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_8	phrog_156	300.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0876985_8	1519439.JPJG01000060_gene1886	694.0	0	N/A	N/A
structural_annotation	UHGV-0876985_8	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_9	phrog_30605	41.8	0.000000000014	N/A	unknown function
PHROG	UHGV-0876985_10	phrog_35275	176.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0876985_10	1226322.HMPREF1545_03846	134.0	6.98e-34	N/A	N/A
PHROG	UHGV-0876985_11	phrog_24113	200.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0876985_11	1226322.HMPREF1545_03847	196.0	0	N/A	N/A
structural_annotation	UHGV-0876985_11	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_12	phrog_371	166.9	0	major head protein	head and packaging
UniRef90	UHGV-0876985_12	UniRef90_A0A8F2JBL2	337.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0876985_12	1226322.HMPREF1545_03848	548.0	0	N/A	N/A
Pfam	UHGV-0876985_12	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0876985_12	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_14	phrog_12105	115.4	2.9e-34	N/A	unknown function
eggNOG-mapper	UHGV-0876985_14	1226322.HMPREF1545_03850	110.0	1.33e-29	N/A	N/A
PHROG	UHGV-0876985_16	phrog_37900	316.3	0	N/A	unknown function
UniRef90	UHGV-0876985_16	UniRef90_UPI00110725F0	555.0	0	N/A	N/A
eggNOG-mapper	UHGV-0876985_16	1519439.JPJG01000060_gene1894	282.0	0	N/A	N/A
Pfam	UHGV-0876985_16	PF07523	N/A	N/A	Bacterial Ig-like domain (group 3)	Big_3
Pfam	UHGV-0876985_16	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0876985_16	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0876985_16	PF19789,PF19190,MF_04116,NF033639,COG1470	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_17	phrog_30516	58.2	1.2e-16	N/A	unknown function
structural_annotation	UHGV-0876985_17	PF05635,NF008911	N/A	N/A	N/A	N/A
KOfam	UHGV-0876985_18	K00986	90.4	2.2e-26	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0876985_18	phrog_1423	211.5	0	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0876985_18	UniRef90_UPI001106632A	540.0	0	reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0876985_18	742722.HMPREF9463_00262	271.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0876985_18	icity0040	60.6	3.8e-17	RT (reverse transcriptase)	CRISPR-CAS
Pfam	UHGV-0876985_18	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0876985_18	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0876985_18	PF00078,TIGR04416,COG3344	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_19	phrog_18593	77.9	1.3e-22	N/A	unknown function
UniRef90	UHGV-0876985_19	UniRef90_A0A2V2GFC0	268.0	0	Chitinase	N/A
eggNOG-mapper	UHGV-0876985_19	552398.HMPREF0866_03095	232.0	0	N/A	N/A
Pfam	UHGV-0876985_19	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
PHROG	UHGV-0876985_20	phrog_1863	67.3	2.2e-20	N/A	unknown function
UniRef90	UHGV-0876985_20	UniRef90_UPI001F223E8B	83.6	1.8e-19	hemolysin XhlA family protein	N/A
eggNOG-mapper	UHGV-0876985_20	1226322.HMPREF1545_04027	107.0	7.4e-30	N/A	N/A
eggNOG-mapper	UHGV-0876985_21	1203606.HMPREF1526_00254	86.7	7.5e-21	N/A	N/A
PHROG	UHGV-0876985_22	phrog_6918	117.8	3.8e-35	holin	lysis
UniRef90	UHGV-0876985_22	UniRef90_R6LQE1	148.0	2.38221e-44	Putative phage holin LL-H family	N/A
eggNOG-mapper	UHGV-0876985_22	552398.HMPREF0866_03092	144.0	2.17201e-43	Bacteriophage holin of superfamily 6 (Holin_LLH)	N/A
Pfam	UHGV-0876985_22	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
structural_annotation	UHGV-0876985_22	PF09682,TIGR01673	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_23	phrog_14030	158.2	0	N/A	unknown function
UniRef90	UHGV-0876985_23	UniRef90_R6LL81	388.0	0	SLH domain-containing protein	N/A
eggNOG-mapper	UHGV-0876985_23	1410631.JHWZ01000015_gene729	95.1	1.97e-19	N/A	N/A
PHROG	UHGV-0876985_24	phrog_1899	51.5	3.9e-16	N/A	unknown function
UniRef90	UHGV-0876985_24	UniRef90_UPI00110693DB	289.0	0	gp58-like family protein	N/A
eggNOG-mapper	UHGV-0876985_24	1226322.HMPREF1545_00783	124.0	1.16e-29	Chaperone of endosialidase	N/A
Pfam	UHGV-0876985_24	PF07902	N/A	N/A	gp58-like protein	Gp58
structural_annotation	UHGV-0876985_24	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_25	phrog_1401	40.4	0.000000000034	N/A	unknown function
structural_annotation	UHGV-0876985_25	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_26	phrog_511	269.7	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0876985_26	1226322.HMPREF1545_00785	607.0	0	N/A	N/A
structural_annotation	UHGV-0876985_26	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0876985_27	1226322.HMPREF1545_00786	198.0	0	N/A	N/A
PHROG	UHGV-0876985_28	phrog_22978	385.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0876985_28	693746.OBV_23800	738.0	0	N/A	N/A
Pfam	UHGV-0876985_28	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
Pfam	UHGV-0876985_28	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
KOfam	UHGV-0876985_30	K22300	48.8	0.00000000000013	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0876985_30	phrog_8	47.4	0.00000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0876985_30	UniRef90_UPI001105B433	129.0	1.32e-37	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0876985_30	1203606.HMPREF1526_01933	89.7	1.15e-22	helix-turn-helix	N/A
Pfam	UHGV-0876985_30	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0876985_30	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0876985_30	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0876985_31	K07482	294.4	0	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0876985_31	phrog_4646	354.2	0	transposase	integration and excision
UniRef90	UHGV-0876985_31	UniRef90_UPI0011062A9C	407.0	0	IS30 family transposase	N/A
eggNOG-mapper	UHGV-0876985_31	411459.RUMOBE_01705	330.0	0	COG COG2826 Transposase and inactivated derivatives, IS30 family	N/A
Pfam	UHGV-0876985_31	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
NCBIFam	UHGV-0876985_31	NF033563.0	N/A	N/A	IS30 family transposase	N/A
COG	UHGV-0876985_31	COG2826	N/A	N/A	Transposase and inactivated derivatives, IS30 family	N/A
structural_annotation	UHGV-0876985_31	PF03400,PF13384,NF033563,COG2826	N/A	N/A	N/A	N/A
KOfam	UHGV-0876985_32	K07482	48.8	0.000000000000099	K07482; transposase, IS30 family	N/A
PHROG	UHGV-0876985_32	phrog_11420	73.4	2.4e-21	DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0876985_32	UniRef90_UPI001106B43D	70.1	0.000000000000188	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0876985_32	411483.FAEPRAA2165_01868	62.0	0.0000000000583	Helix-turn-helix domain	N/A
Pfam	UHGV-0876985_32	PF13936	N/A	N/A	Helix-turn-helix domain	HTH_38
PHROG	UHGV-0876985_33	phrog_4068	70.0	4.1e-20	N/A	unknown function
structural_annotation	UHGV-0876985_33	PF06657	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_34	phrog_3777	57.5	1.5e-16	N/A	unknown function
UniRef90	UHGV-0876985_34	UniRef90_A0A6L6P4P4	65.1	0.0000000000201	N/A	N/A
eggNOG-mapper	UHGV-0876985_34	796942.HMPREF9623_01951	56.6	0.00000012	N/A	N/A
Pfam	UHGV-0876985_34	PF12957	N/A	N/A	N/A	DUF3846
COG	UHGV-0876985_34	COG4734	N/A	N/A	Antirestriction protein ArdA	N/A
structural_annotation	UHGV-0876985_34	PF12957	N/A	N/A	N/A	N/A
KOfam	UHGV-0876985_35	K03111	112.9	4.4e-33	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0876985_35	phrog_44	122.6	3.1e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0876985_35	UniRef90_UPI001106EC6F	142.0	2.90994e-41	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0876985_35	445972.ANACOL_00151	134.0	1.55e-38	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0876985_35	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0876985_35	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0876985_35	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0876985_35	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0876985_35	PF00436,MF_00984,NF006445,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_37	phrog_30550	176.6	0	N/A	unknown function
UniRef90	UHGV-0876985_37	UniRef90_UPI001486382B	161.0	0	cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0876985_37	1519439.JPJG01000077_gene920	110.0	3.24e-28	Cell Wall Hydrolase	N/A
structural_annotation	UHGV-0876985_37	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_39	phrog_424	79.4	4.1e-23	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
eggNOG-mapper	UHGV-0876985_39	445972.ANACOL_01819	497.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
COG	UHGV-0876985_39	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
PHROG	UHGV-0876985_40	phrog_355	54.4	0.0000000000000015	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0876985_40	397290.C810_05229	132.0	3.51e-37	N/A	N/A
PHROG	UHGV-0876985_41	phrog_2245	95.3	4.1e-28	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0876985_41	1445809.A0A0A7AR29_9CAUD	112.0	3.9e-29	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
Pfam	UHGV-0876985_41	PF13876	N/A	N/A	N/A	Phage_gp49_66
dbAPIS	UHGV-0876985_41	APIS043	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0876985_41	PF13876	N/A	N/A	N/A	N/A
PHROG	UHGV-0876985_43	phrog_21980	42.4	0.0000000000011	N/A	unknown function
UniRef90	UHGV-0876985_43	UniRef90_A0A1Q6L1N6	120.0	2e-30	N/A	N/A
Pfam	UHGV-0876985_43	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0876985_43	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0876985	Yes	41,925	60	100	1
UHGV-0831902	No	41,925	60	100	1
UHGV-0026242	No	42,194	60	100	1
UHGV-0030420	No	43,046	60	100	1
UHGV-1474576	No	42,619	59	100	1
UHGV-1541698	No	42,086	59	100	1
UHGV-1518201	No	38,917	59	92	1
UHGV-0161963	No	16,920	60	40	1
UHGV-1822108	No	16,536	60	39	1