vOTU vOTU-004176

vOTU: vOTU-004176

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004176
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00124 → vSUBFAM-00555 → vGENUS-00885 → vSUBGEN-06224 → vOTU-004176
Host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Anaerovoracaceae → CAG-238
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0039582
Biosample ID	SAMEA4969120
Genome length (bp)	40,201 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	91.94%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Peptostreptococcales → Anaerovoracaceae → CAG-238	Total connections	13	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0039582_1	phrog_155	149.3	2.24208e-44	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_1	UniRef90_UPI001CF85C41	229.0	0	ERF family protein	N/A
eggNOG-mapper	UHGV-0039582_1	1462527.CCDM010000010_gene489	184.0	0	ERF superfamily	N/A
Pfam	UHGV-0039582_1	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0039582_1	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_2	phrog_2113	48.0	0.00000000000013	N/A	unknown function
Pfam	UHGV-0039582_2	PF08279	N/A	N/A	HTH domain	HTH_11
PHROG	UHGV-0039582_3	phrog_22529	113.4	1.1e-33	N/A	unknown function
UniRef90	UHGV-0039582_3	UniRef90_R6EKT9	158.0	0	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-0039582_3	1410622.JNKY01000010_gene1282	96.7	9.28e-22	3D domain	N/A
Pfam	UHGV-0039582_3	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-0039582_3	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-0039582_3	PF06725,MF_02071,NF040677,COG3584	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039582_5	NF040990	N/A	N/A	N/A	N/A
KOfam	UHGV-0039582_6	K23779	47.2	0.00000000000047	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0039582_6	phrog_8	53.9	0.0000000000000043	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039582_6	UniRef90_A0A8G0M6K7	67.8	0.000000000000127	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0039582_6	12417.Q9T1J3_9CAUD	55.8	0.00000000285	sequence-specific DNA binding	N/A
Pfam	UHGV-0039582_6	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0039582_6	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039582_7	PF21441,TIGR04176,COG1846	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_9	phrog_8	63.4	4.9e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-0039582_9	UniRef90_A6BEU9	95.1	6.98e-23	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0039582_9	411462.DORLON_00819	95.1	1.17e-23	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0039582_9	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0039582_9	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0039582_9	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_10	phrog_20936	45.1	0.0000000000016	N/A	unknown function
UniRef90	UHGV-0039582_10	UniRef90_UPI00164BB8FD	52.8	0.000000156	ImmA/IrrE family metallo-endopeptidase	N/A
Pfam	UHGV-0039582_10	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0039582_10	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0039582_11	K06882	66.9	2.6e-19	N/A	N/A
eggNOG-mapper	UHGV-0039582_11	645991.Sgly_2993	70.1	0.000000000119	cell wall binding repeat 2	N/A
COG	UHGV-0039582_11	COG2247	N/A	N/A	Putative cell wall-binding domain (amidase enhancer), LytB superfamily	N/A
KOfam	UHGV-0039582_12	K14059	146.7	2.70451e-43	int; integrase	N/A
PHROG	UHGV-0039582_12	phrog_1	169.5	0	integrase	integration and excision
UniRef90	UHGV-0039582_12	UniRef90_A0A845QLR8	341.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0039582_12	936375.HMPREF1152_1040	218.0	0	Phage integrase family	N/A
Pfam	UHGV-0039582_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0039582_12	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0039582_12	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039582_14	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_15	phrog_16490	43.9	0.00000000000058	N/A	unknown function
eggNOG-mapper	UHGV-0039582_15	641112.ACOK01000103_gene525	92.8	1.39e-20	N/A	N/A
PHROG	UHGV-0039582_17	phrog_21718	54.8	0.0000000000000013	N/A	unknown function
eggNOG-mapper	UHGV-0039582_17	397290.C810_05210	52.8	0.000000436	N/A	N/A
UniRef90	UHGV-0039582_18	UniRef90_A0A843HPX3	87.8	1.55e-21	Sigma-70 family RNA polymerase sigma factor	N/A
eggNOG-mapper	UHGV-0039582_18	1235790.C805_00057	51.2	0.0000000789	N/A	N/A
structural_annotation	UHGV-0039582_18	PF13404,TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_19	phrog_6918	52.4	0.0000000000000076	holin	lysis
Pfam	UHGV-0039582_19	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UniRef90	UHGV-0039582_22	UniRef90_A0A7X6X882	159.0	1.4013e-45	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0039582_22	552396.HMPREF0863_01358	117.0	1.21e-27	CHAP domain	N/A
Pfam	UHGV-0039582_22	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0039582_22	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0039582_22	COG3942	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_23	phrog_9854	120.2	1.2e-35	N/A	unknown function
eggNOG-mapper	UHGV-0039582_23	1121091.AUMP01000003_gene2597	261.0	0	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis	N/A
Pfam	UHGV-0039582_23	PF18798	N/A	N/A	Large polyvalent protein-associated domain 3	LPD3
Pfam	UHGV-0039582_23	PF18857	N/A	N/A	Large polyvalent protein associated domain 38	LPD38
COG	UHGV-0039582_23	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
structural_annotation	UHGV-0039582_23	PF18857,PF18798	N/A	N/A	N/A	N/A
Pfam	UHGV-0039582_24	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
structural_annotation	UHGV-0039582_24	TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_29	phrog_3287	85.7	3.1e-25	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0039582_29	1232449.BAHV02000016_gene1816	245.0	0	N/A	N/A
structural_annotation	UHGV-0039582_29	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039582_31	PF07100,COG4288	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_32	phrog_267	82.3	4.9e-24	major head protein	head and packaging
UniRef90	UHGV-0039582_32	UniRef90_A0A7C6CNA9	158.0	2.01787e-43	P22 coat protein-protein 5 domain protein	N/A
eggNOG-mapper	UHGV-0039582_32	665956.HMPREF1032_03906	315.0	0	P22 coat protein-protein 5 domain protein	N/A
structural_annotation	UHGV-0039582_32	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_34	phrog_156	74.6	1.9e-22	portal protein	head and packaging
eggNOG-mapper	UHGV-0039582_34	1232449.BAHV02000016_gene1822	412.0	0	N/A	N/A
structural_annotation	UHGV-0039582_34	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_36	phrog_38	350.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-0039582_36	UniRef90_A0A845QMQ7	667.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0039582_36	755731.Clo1100_2438	458.0	0	TIGRFAM Phage	N/A
Pfam	UHGV-0039582_36	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0039582_36	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-0039582_36	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0039582_36	COG5362	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0039582_36	PF17289,PF05876,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039582_39	NF040976	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_40	phrog_15863	133.5	1e-39	N/A	unknown function
UniRef90	UHGV-0039582_40	UniRef90_A0A644WI33	150.0	2.9147e-43	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0039582_40	693746.OBV_01780	149.0	7.9874e-44	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-0039582_40	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-0039582_44	PF05263,TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0039582_45	PF18066	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_47	phrog_25385	68.7	7e-20	N/A	unknown function
eggNOG-mapper	UHGV-0039582_47	476272.RUMHYD_03328	71.6	0.0000000000000274	N/A	N/A
PHROG	UHGV-0039582_50	phrog_2118	106.8	2.3e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_50	UniRef90_A0A413SFY3	138.0	5.07e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0039582_50	693746.OBV_25310	137.0	3.45e-40	HNH endonuclease	N/A
Pfam	UHGV-0039582_50	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0039582_50	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0039582_50	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_53	phrog_21026	52.6	0.0000000000000053	N/A	unknown function
PHROG	UHGV-0039582_56	phrog_14105	204.2	0	N/A	unknown function
UniRef90	UHGV-0039582_56	UniRef90_A0A489EBT0	107.0	9.95e-24	PPE-repeat proteins	N/A
eggNOG-mapper	UHGV-0039582_56	485918.Cpin_3860	91.7	7.54e-19	Pentapeptide repeats (8 copies)	N/A
Pfam	UHGV-0039582_56	PF01469	N/A	N/A	Pentapeptide repeats (8 copies)	Pentapeptide_2
COG	UHGV-0039582_56	COG5263	N/A	N/A	Glucan-binding domain (YG repeat)	N/A
KOfam	UHGV-0039582_59	K02315	197.0	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0039582_59	phrog_50	180.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_59	UniRef90_R6DSN6	308.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0039582_59	1123313.ATUT01000003_gene867	184.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-0039582_59	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0039582_59	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0039582_59	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0039582_59	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_60	phrog_2514	105.6	4.2e-31	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_60	UniRef90_UPI001C1E0E19	196.0	0	GntR family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0039582_60	646529.Desaci_3039	144.0	3.62e-39	Transcriptional regulator	N/A
COG	UHGV-0039582_60	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0039582_60	PF08222,NF033788,COG0640	N/A	N/A	N/A	N/A
KOfam	UHGV-0039582_61	K01160	40.0	0.000000000089	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0039582_61	phrog_1682	85.5	7e-25	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_61	UniRef90_R6DSN2	199.0	0	Crossover junction endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0039582_61	1120985.AUMI01000019_gene2247	127.0	1.03e-35	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0039582_61	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0039582_61	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_62	phrog_154	40.5	0.000000000039	replication initiation protein	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0039582_62	PF17399	N/A	N/A	N/A	N/A
KOfam	UHGV-0039582_63	K03111	137.9	1.10001e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0039582_63	phrog_44	129.5	2.5e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_63	UniRef90_R6E0A2	238.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0039582_63	1120998.AUFC01000019_gene325	198.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0039582_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0039582_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0039582_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0039582_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0039582_63	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_64	phrog_7566	100.0	1.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-0039582_64	1118057.CAGX01000020_gene1648	80.1	1.32e-18	N/A	N/A
PHROG	UHGV-0039582_65	phrog_72	56.9	2.7e-16	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_65	UniRef90_A0A8D9PDS2	122.0	4.87e-32	NinB protein	N/A
eggNOG-mapper	UHGV-0039582_65	445972.ANACOL_01825	146.0	3.30987e-42	N/A	N/A
structural_annotation	UHGV-0039582_65	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0039582_66	phrog_434	108.0	7.3e-32	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0039582_66	UniRef90_UPI001CF8591D	276.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-0039582_66	1122146.AUHP01000010_gene1042	189.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-0039582_66	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
COG	UHGV-0039582_66	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-0039582_66	PF10926,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0039582	Yes	40,201	42	100	1
UHGV-0035050	No	40,201	42	100	1
UHGV-0037560	No	31,805	43	79	1