vOTU vOTU-004223

vOTU: vOTU-004223

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004223
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00227 → vGENUS-03192 → vSUBGEN-29269 → vOTU-004223
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1384605
Biosample ID	SAMN06350078
Genome length (bp)	43,520 bps
CheckV completeness	100.00% (Complete)
CDS count	68
CDS density	91.61%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	356	Host agreement	96.91
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-74 → Limiplasma → Limiplasma sp004556545	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-1384605_5	1235793.C809_00539	54.7	0.000000982	N/A	N/A
Pfam	UHGV-1384605_5	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1384605_5	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1384605_6	693746.OBV_18010	125.0	2.27e-34	N/A	N/A
structural_annotation	UHGV-1384605_6	TIGR01636	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1384605_11	PF14354	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_15	K00558	223.0	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1384605_15	phrog_116	261.7	0	DNA methyltransferase	other
eggNOG-mapper	UHGV-1384605_15	1519439.JPJG01000060_gene1872	643.0	0	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	N/A
PADLOC	UHGV-1384605_15	MTase_II_00164	97.3	1.6e-33	Type II methyltransferase	RM
Pfam	UHGV-1384605_15	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1384605_15	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1384605_15	PF00145,MF_00351,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_16	phrog_31240	42.4	3.1e-16	N/A	unknown function
eggNOG-mapper	UHGV-1384605_16	1007096.BAGW01000031_gene119	124.0	2.2e-31	DEAD-like helicases superfamily	N/A
COG	UHGV-1384605_16	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
KOfam	UHGV-1384605_18	K01160	63.7	4.1e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1384605_18	phrog_34	59.8	4.4e-16	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_18	561177.ANHYDRO_01396	117.0	2.58e-32	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1384605_18	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1384605_18	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1384605_18	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_19	K02314	275.7	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-1384605_19	phrog_19	247.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_19	1408437.JNJN01000010_gene1232	188.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-1384605_19	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-1384605_19	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-1384605_19	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-1384605_19	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_20	phrog_270	97.7	1.2e-27	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_20	203119.Cthe_2466	107.0	1.47e-24	N/A	N/A
structural_annotation	UHGV-1384605_20	PF01475,NF006999,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_21	K03111	152.7	2.66247e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1384605_21	phrog_44	149.2	1.69557e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_21	1519439.JPJG01000082_gene432	183.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1384605_21	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1384605_21	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1384605_21	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1384605_21	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1384605_21	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
Pfam	UHGV-1384605_22	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1384605_22	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_23	phrog_7566	90.1	1.2e-25	N/A	unknown function
eggNOG-mapper	UHGV-1384605_23	1007096.BAGW01000031_gene114	124.0	6.4e-36	N/A	N/A
PHROG	UHGV-1384605_24	phrog_374	64.6	1.1e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_24	1423807.BACO01000036_gene1075	75.5	0.00000000000000692	N/A	N/A
structural_annotation	UHGV-1384605_24	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_25	phrog_72	47.8	0.00000000000067	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_25	445972.ANACOL_01825	124.0	1.52e-33	N/A	N/A
structural_annotation	UHGV-1384605_25	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_26	phrog_155	84.8	1e-23	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_26	1268072.PSAB_05935	173.0	0	ERF superfamily	N/A
Pfam	UHGV-1384605_26	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1384605_26	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_32	K08131	61.2	4.2e-17	COL9A; collagen type IX alpha	N/A
PHROG	UHGV-1384605_32	phrog_4433	252.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1384605_32	573061.Clocel_3578	118.0	3.07e-27	regulation of DNA-templated transcription, elongation	N/A
Pfam	UHGV-1384605_32	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1384605_32	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1384605_32	PF12120,NF000318	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_34	K22300	46.9	0.0000000000041	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
eggNOG-mapper	UHGV-1384605_34	796942.HMPREF9623_00878	55.1	0.0000000494	N/A	N/A
Pfam	UHGV-1384605_34	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-1384605_34	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1384605_34	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1384605_35	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1384605_36	COG1321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1384605_39	1385510.N781_09875	50.8	0.00000757	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-1384605_39	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1384605_39	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1384605_39	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_40	K14059	149.0	3.9937e-43	int; integrase	N/A
PHROG	UHGV-1384605_40	phrog_1	156.1	2.8026e-45	integrase	integration and excision
eggNOG-mapper	UHGV-1384605_40	693746.OBV_41260	298.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1384605_40	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1384605_40	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1384605_40	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1384605_41	1408437.JNJN01000043_gene801	67.8	0.00000000000945	N/A	N/A
structural_annotation	UHGV-1384605_42	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_43	phrog_16490	53.0	0.000000000000056	N/A	unknown function
eggNOG-mapper	UHGV-1384605_43	397290.C810_05212	60.8	0.0000000192	N/A	N/A
KOfam	UHGV-1384605_47	K01448	44.9	0.000000000012	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1384605_47	phrog_435	76.7	3.1e-21	endolysin	lysis
eggNOG-mapper	UHGV-1384605_47	994573.T472_0210960	139.0	4.86e-38	n-acetylmuramoyl-l-alanine amidase	N/A
Pfam	UHGV-1384605_47	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-1384605_47	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1384605_47	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1384605_47	PF01520,MF_00562,TIGR02883,COG0860	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_48	phrog_199	76.7	2.1e-21	holin	lysis
eggNOG-mapper	UHGV-1384605_48	1160721.RBI_I01565	132.0	2.05e-37	Bacteriophage holin family	N/A
Pfam	UHGV-1384605_48	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1384605_48	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1384605_48	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1384605_48	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_49	K13925	57.2	9.8e-16	pfbA; plasmin and fibronectin-binding protein A	N/A
PHROG	UHGV-1384605_49	phrog_15455	52.3	0.000000000000028	tail fiber protein	tail
eggNOG-mapper	UHGV-1384605_49	1268068.PG5_25610	66.6	0.0000000252	COG2931 RTX toxins and related Ca2 -binding proteins	N/A
Pfam	UHGV-1384605_49	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-1384605_49	COG2931	N/A	N/A	Ca2+-binding protein, RTX toxin-related	N/A
PHROG	UHGV-1384605_52	phrog_372	213.0	0	tail protein	tail
eggNOG-mapper	UHGV-1384605_52	1235802.C823_05263	203.0	0	N/A	N/A
Pfam	UHGV-1384605_52	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1384605_52	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1384605_52	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_53	phrog_6616	103.2	6.7e-31	tail protein	tail
eggNOG-mapper	UHGV-1384605_53	469596.HMPREF9488_01318	290.0	0	N/A	N/A
structural_annotation	UHGV-1384605_53	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_54	phrog_1194	117.5	4.5e-34	N/A	unknown function
eggNOG-mapper	UHGV-1384605_54	1414720.CBYM010000002_gene561	111.0	4.76e-30	N/A	N/A
Pfam	UHGV-1384605_54	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1384605_54	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_55	phrog_1535	158.9	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1384605_55	1121866.AUGK01000003_gene1437	277.0	0	phage tail tape measure protein	N/A
COG	UHGV-1384605_55	COG1280	N/A	N/A	Threonine/homoserine/homoserine lactone efflux protein	N/A
eggNOG-mapper	UHGV-1384605_56	1121333.JMLH01000047_gene1011	50.8	0.00000182	N/A	N/A
eggNOG-mapper	UHGV-1384605_57	469596.HMPREF9488_01311	94.0	1.55e-23	N/A	N/A
Pfam	UHGV-1384605_57	PF16478	N/A	N/A	N/A	DUF5055
structural_annotation	UHGV-1384605_57	PF16478	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_58	phrog_158	58.4	0.0000000000000013	major tail protein	tail
eggNOG-mapper	UHGV-1384605_58	1232453.BAIF02000058_gene1634	98.6	1.84e-24	N/A	N/A
Pfam	UHGV-1384605_58	PF08813	N/A	N/A	Phage tail tube protein, TTP	Phage_tail_3
structural_annotation	UHGV-1384605_58	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1384605_59	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1384605_60	476272.RUMHYD_01963	61.6	0.00000000194	N/A	N/A
eggNOG-mapper	UHGV-1384605_61	1298920.KI911353_gene2656	91.7	4.89e-22	N/A	N/A
eggNOG-mapper	UHGV-1384605_62	1298920.KI911353_gene2658	57.0	0.00000000388	N/A	N/A
Pfam	UHGV-1384605_62	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
structural_annotation	UHGV-1384605_62	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_63	phrog_1328	120.2	1.1e-34	major head protein	head and packaging
eggNOG-mapper	UHGV-1384605_63	665956.HMPREF1032_03619	227.0	0	N/A	N/A
Pfam	UHGV-1384605_63	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-1384605_63	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_65	phrog_64	220.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1384605_65	1123263.AUKY01000015_gene1609	414.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-1384605_65	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1384605_65	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1384605_66	phrog_38	149.4	1.59748e-43	terminase large subunit	head and packaging
eggNOG-mapper	UHGV-1384605_66	1298920.KI911353_gene2682	293.0	0	TIGRFAM Phage	N/A
NCBIFam	UHGV-1384605_66	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-1384605_66	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1384605_66	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
KOfam	UHGV-1384605_68	K14060	148.0	5.49309e-43	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-1384605_68	phrog_125	190.0	0	DNA invertase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1384605_68	411467.BACCAP_02922	234.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1384605_68	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
COG	UHGV-1384605_68	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1384605_68	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1384605	Yes	43,520	55	100	1
UHGV-0280381	No	43,385	55	100	1
UHGV-1453637	No	45,755	54	100	1
UHGV-1450336	No	44,843	55	100	1
UHGV-1421983	No	35,869	55	83	1