vOTU vOTU-004332

vOTU: vOTU-004332

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004332
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vSUBGEN-03066 → vOTU-004332
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1357448
Biosample ID	N/A
Genome length (bp)	41,831 bps
CheckV completeness	100.00% (Complete)
CDS count	71
CDS density	92.56%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	1076	Host agreement	96.65
PHIST-predicted host lineage	Bacteria → Firmicutes_A	Total connections	11	Host agreement	63.64

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1357448_2	phrog_9534	45.0	0.0000000000017	head protein	head and packaging
eggNOG-mapper	UHGV-1357448_2	748224.HMPREF9436_01407	122.0	8.8e-29	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1357448_3	phrog_3558	205.9	0	tail protein	tail
UniRef90	UHGV-1357448_3	UniRef90_R9C6X0	65.5	0.000000145	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-1357448_3	610130.Closa_0754	68.6	0.00000000297	N/A	N/A
Pfam	UHGV-1357448_3	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1357448_3	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1357448_3	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357448_4	UniRef90_A0A417QGC1	116.0	3.15e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-1357448_4	411490.ANACAC_00709	103.0	5.45e-24	phage tail	N/A
COG	UHGV-1357448_4	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1357448_4	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_5	phrog_28775	125.0	5.2e-37	tail length tape measure protein	tail
UniRef90	UHGV-1357448_5	UniRef90_A0A6N7TLD3	1392.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1357448_5	411470.RUMGNA_02228	128.0	7.57e-28	tape measure	N/A
Pfam	UHGV-1357448_5	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1357448_5	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1357448_5	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1357448_5	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_8	phrog_885	70.6	1.8e-20	major tail protein	tail
eggNOG-mapper	UHGV-1357448_8	1111121.HMPREF1247_0789	172.0	0	N/A	N/A
structural_annotation	UHGV-1357448_8	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357448_9	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_10	phrog_17977	41.9	0.000000000013	N/A	unknown function
UniRef90	UHGV-1357448_10	UniRef90_A0A844DHJ8	118.0	4.65e-32	Phage head closure protein	N/A
structural_annotation	UHGV-1357448_10	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_12	phrog_544	139.1	3.09995e-41	major head protein	head and packaging
UniRef90	UHGV-1357448_12	UniRef90_R0BKA1	436.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1357448_12	476272.RUMHYD_01776	319.0	0	N/A	N/A
structural_annotation	UHGV-1357448_12	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_14	phrog_478	126.3	1.2e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1357448_14	UniRef90_A0A373Q857	167.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1357448_14	1111121.HMPREF1247_0834	96.3	7.89e-24	N/A	N/A
PHROG	UHGV-1357448_16	phrog_5	50.3	0.000000000000057	tail completion or Neck1 protein	connector
UniRef90	UHGV-1357448_16	UniRef90_A0A6N7TNP6	280.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1357448_16	929506.CbC4_1219	87.4	6.7e-20	N/A	N/A
Pfam	UHGV-1357448_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1357448_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_18	phrog_2468	80.0	1.5e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1357448_18	UniRef90_A0A6N7TLR7	621.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1357448_18	1504822.CCNO01000013_gene286	111.0	3.22e-24	cell adhesion	N/A
Pfam	UHGV-1357448_18	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1357448_18	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357448_18	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_20	phrog_64	115.9	1.4e-34	portal protein	head and packaging
UniRef90	UHGV-1357448_20	UniRef90_A0A6N7TNT3	891.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1357448_20	642492.Clole_2764	80.5	0.000000000000229	phage portal protein, SPP1	N/A
Pfam	UHGV-1357448_20	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1357448_20	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-1357448_21	K06909	142.4	3.99931e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1357448_21	phrog_10250	175.2	0	N/A	unknown function
UniRef90	UHGV-1357448_21	UniRef90_A0A844D8I4	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1357448_21	411490.ANACAC_00783	494.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1357448_21	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1357448_21	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1357448_21	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1357448_21	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1357448_21	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357448_22	UniRef90_UPI0018CC2891	116.0	2.94e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1357448_22	1235790.C805_00037	111.0	3.67e-29	N/A	N/A
structural_annotation	UHGV-1357448_22	PF04218	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357448_23	UniRef90_A0A6N7TNN9	71.6	0.000000000000835	N/A	N/A
structural_annotation	UHGV-1357448_23	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-1357448_25	K01160	60.0	6.9e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1357448_25	phrog_34	59.8	5.8e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357448_25	UniRef90_A0A6N7TND6	226.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1357448_25	875454.BAEW01000002_gene491	135.0	1.32e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1357448_25	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1357448_25	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1357448_25	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_26	phrog_3136	122.3	1.5e-36	N/A	unknown function
UniRef90	UHGV-1357448_26	UniRef90_UPI001CBCD733	198.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1357448_26	97139.C824_00742	65.9	0.0000000000527	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-1357448_26	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1357448_26	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_28	phrog_757	189.2	0	DNA methyltransferase	other
UniRef90	UHGV-1357448_28	UniRef90_UPI001A9B5584	412.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1357448_28	748224.HMPREF9436_03069	310.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1357448_28	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1357448_28	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357448_30	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1357448_31	K02086	59.8	3e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-1357448_31	phrog_186	71.6	1e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357448_31	UniRef90_A0A844D5V0	220.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1357448_31	748224.HMPREF9436_03357	65.9	0.000000000747	N/A	N/A
Pfam	UHGV-1357448_31	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-1357448_31	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1357448_31	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-1357448_31	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357448_32	UniRef90_UPI001CBB85F6	112.0	4.74e-28	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1357448_32	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_33	phrog_2760	183.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1357448_33	UniRef90_A0A3A6EAW6	526.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1357448_33	1235794.C811_01355	151.0	2.42999e-41	RecT family	N/A
Pfam	UHGV-1357448_33	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1357448_33	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1357448_33	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1357448_33	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_34	phrog_674	144.3	8.29569e-43	N/A	unknown function
UniRef90	UHGV-1357448_34	UniRef90_A0A3A6E846	479.0	0	N/A	N/A
eggNOG-mapper	UHGV-1357448_34	556268.OFAG_00840	86.3	1.03e-16	N/A	N/A
Pfam	UHGV-1357448_34	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1357448_34	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357448_36	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357448_37	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_39	phrog_4433	153.3	0	N/A	unknown function
eggNOG-mapper	UHGV-1357448_39	394503.Ccel_3068	102.0	4.88e-24	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1357448_39	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1357448_39	PF12120,NF007410	N/A	N/A	N/A	N/A
KOfam	UHGV-1357448_42	K07741	134.4	1.8e-39	antB; anti-repressor protein	N/A
PHROG	UHGV-1357448_42	phrog_63	115.3	6.3e-34	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1357448_42	UniRef90_A0A6N7TLD1	257.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-1357448_42	1216932.CM240_0604	209.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1357448_42	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1357448_42	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1357448_42	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1357448_42	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_43	phrog_8	41.0	0.000000000042	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357448_43	UniRef90_UPI001C009F10	114.0	3.92e-32	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1357448_43	699218.HMPREF0889_0208	50.4	0.000000509	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1357448_43	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357448_43	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1357448_43	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1357448_44	K22300	42.1	0.000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1357448_44	phrog_8	55.4	0.0000000000000015	transcriptional regulator	transcription regulation
UniRef90	UHGV-1357448_44	UniRef90_UPI001C020D87	75.9	0.00000000000000252	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1357448_44	665950.HMPREF1025_02562	57.8	0.00000000497	TRANSCRIPTIONal	N/A
Pfam	UHGV-1357448_44	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357448_44	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1357448_44	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357448_45	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1357448_48	641112.ACOK01000103_gene519	58.5	0.000000062	N/A	N/A
UniRef90	UHGV-1357448_49	UniRef90_A0A3S9H8P5	135.0	1.56e-34	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-1357448_49	1280696.ATVY01000034_gene3237	112.0	1.4e-26	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-1357448_49	PF08461	N/A	N/A	Ribonuclease R winged-helix domain	HTH_12
UniRef90	UHGV-1357448_51	UniRef90_A0A6N7TLT0	343.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1357448_51	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1357448_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1357448_51	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1357448_52	K14059	140.0	2.70002e-41	int; integrase	N/A
PHROG	UHGV-1357448_52	phrog_1	165.6	0	integrase	integration and excision
UniRef90	UHGV-1357448_52	UniRef90_A0A6N7TNQ4	745.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1357448_52	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1357448_52	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1357448_52	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1357448_52	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1357448_54	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_55	phrog_20016	193.4	0	N/A	unknown function
UniRef90	UHGV-1357448_55	UniRef90_A0A285PT46	206.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1357448_55	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-1357448_55	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_56	phrog_16490	203.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1357448_56	397290.C810_01328	131.0	1.86e-33	N/A	N/A
PHROG	UHGV-1357448_57	phrog_22984	69.3	5.3e-20	N/A	unknown function
PHROG	UHGV-1357448_58	phrog_21718	87.5	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1357448_58	397290.C810_05210	81.3	2.91e-17	N/A	N/A
PHROG	UHGV-1357448_59	phrog_3754	93.2	2.6e-27	N/A	unknown function
eggNOG-mapper	UHGV-1357448_59	1235790.C805_00054	108.0	6.3e-29	N/A	N/A
COG	UHGV-1357448_61	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1357448_61	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_63	phrog_1454	48.4	0.00000000000016	N/A	unknown function
UniRef90	UHGV-1357448_63	UniRef90_A0A0D1WCB4	49.7	0.00000176	Phosphomannomutase	N/A
eggNOG-mapper	UHGV-1357448_63	742740.HMPREF9474_04325	57.4	0.000000000269	N/A	N/A
structural_annotation	UHGV-1357448_64	PF07870,MF_01506	N/A	N/A	N/A	N/A
UniRef90	UHGV-1357448_66	UniRef90_UPI0018835F0C	493.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1357448_66	411483.FAEPRAA2165_00757	176.0	0	N/A	N/A
structural_annotation	UHGV-1357448_66	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_67	phrog_15303	115.6	2.2e-34	N/A	unknown function
Pfam	UHGV-1357448_67	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-1357448_69	K07273	175.4	0	acm; lysozyme	N/A
PHROG	UHGV-1357448_69	phrog_291	147.7	9.10844e-44	endolysin	lysis
UniRef90	UHGV-1357448_69	UniRef90_E2ZES5	348.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1357448_69	748224.HMPREF9436_00154	348.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1357448_69	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1357448_69	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1357448_69	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1357448_70	phrog_1382	46.4	0.00000000000026	N/A	unknown function
eggNOG-mapper	UHGV-1357448_70	411468.CLOSCI_00272	45.1	0.00000937	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1357448	Yes	41,831	55	100	1
UHGV-0190128	No	41,741	55	100	1
UHGV-0074968	No	41,738	55	99	1
UHGV-1433406	No	41,738	55	99	1
UHGV-1403692	No	25,290	56	60	1