vOTU vOTU-004406

vOTU: vOTU-004406

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004406
Number of genomes	22
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245
Taxonomy (UHGV)	vFAM-00087 → vSUBFAM-00289 → vGENUS-01322 → vSUBGEN-14302 → vOTU-004406
Host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0128223
Biosample ID	SAMN00792014
Genome length (bp)	45,400 bps
CheckV completeness	100.00% (Complete)
CDS count	84
CDS density	91.59%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245	Total connections	767	Host agreement	95.05
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Christensenellales → CAG-138 → SFEL01 → SFEL01 sp004557245	Total connections	11	Host agreement	72.73

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0128223_1	phrog_38832	67.2	7e-21	N/A	unknown function
eggNOG-mapper	UHGV-0128223_1	1232443.BAIA02000078_gene48	115.0	1.92e-31	N/A	N/A
UniRef90	UHGV-0128223_4	UniRef90_A0A1C6DFA0	199.0	0	FAD-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0128223_4	1410632.JHWW01000006_gene695	103.0	4.49e-25	N/A	N/A
Pfam	UHGV-0128223_4	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
structural_annotation	UHGV-0128223_4	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_6	phrog_2245	71.2	1.6e-20	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-0128223_6	926561.KB900623_gene754	49.7	0.00000103	N/A	N/A
PHROG	UHGV-0128223_7	phrog_244	84.0	2.3e-24	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0128223_7	742740.HMPREF9474_03491	125.0	1.13e-35	N/A	N/A
structural_annotation	UHGV-0128223_7	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_9	K02314	396.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0128223_9	phrog_19	302.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0128223_9	UniRef90_A0A1C6FK91	260.0	0	Replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0128223_9	445973.CLOBAR_00032	255.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0128223_9	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0128223_9	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0128223_9	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0128223_9	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_10	phrog_15768	84.1	2.5e-24	N/A	unknown function
UniRef90	UHGV-0128223_10	UniRef90_UPI000F8C6244	103.0	2.99e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0128223_10	1158294.JOMI01000001_gene1618	121.0	2.46e-31	N/A	N/A
structural_annotation	UHGV-0128223_10	PF04492,MF_01177,NF041413,COG5625	N/A	N/A	N/A	N/A
COG	UHGV-0128223_11	COG4443	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_12	K03111	152.7	4.2039e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0128223_12	phrog_44	132.9	2.3e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0128223_12	UniRef90_A0A316PZZ8	169.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0128223_12	1042163.BRLA_c046430	134.0	1.84e-38	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0128223_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0128223_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0128223_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0128223_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0128223_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_13	K07451	43.9	0.0000000000048	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0128223_13	phrog_7370	63.9	2.4e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0128223_13	UniRef90_A0A498CPV0	130.0	3.05e-37	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0128223_13	445972.ANACOL_01826	99.8	4.54e-26	HNH nucleases	N/A
Pfam	UHGV-0128223_13	PF01844	N/A	N/A	HNH endonuclease	HNH
PHROG	UHGV-0128223_14	phrog_1389	70.5	2.4e-20	N/A	unknown function
eggNOG-mapper	UHGV-0128223_14	1280692.AUJL01000025_gene2094	73.9	0.0000000000000015	N/A	N/A
structural_annotation	UHGV-0128223_14	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0128223_15	1041142.ATTP01000043_gene5324	60.8	0.0000000333	N/A	N/A
PHROG	UHGV-0128223_16	phrog_253	132.1	3.5e-39	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0128223_16	UniRef90_UPI00189A2233	131.0	8.6e-36	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0128223_16	903814.ELI_1272	97.1	3.71e-23	Siphovirus Gp157	N/A
Pfam	UHGV-0128223_16	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0128223_16	PF05565,NF002139	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0128223_20	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_24	K22300	63.6	4.2e-18	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0128223_24	phrog_8	70.3	4e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0128223_24	UniRef90_R6EZB0	84.3	5.49e-19	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0128223_24	1121335.Clst_0369	79.0	1.53e-17	helix-turn-helix	N/A
Pfam	UHGV-0128223_24	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0128223_24	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
UniRef90	UHGV-0128223_25	UniRef90_A0A1C6HD04	73.9	0.0000000000000232	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0128223_25	1408322.JHYK01000019_gene245	52.0	0.00000529	Putative restriction endonuclease	N/A
Pfam	UHGV-0128223_25	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0128223_25	COG4636	N/A	N/A	Endonuclease, Uma2 family (restriction endonuclease fold)	N/A
structural_annotation	UHGV-0128223_25	PF13560,MF_00535,NF041677,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_26	K14059	248.6	0	int; integrase	N/A
PHROG	UHGV-0128223_26	phrog_1	218.5	0	integrase	integration and excision
UniRef90	UHGV-0128223_26	UniRef90_R6M673	172.0	0	Putative integrase-phage associated	N/A
eggNOG-mapper	UHGV-0128223_26	1235797.C816_00779	152.0	6.3e-40	Phage integrase family	N/A
Pfam	UHGV-0128223_26	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0128223_26	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0128223_26	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0128223_26	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0128223_28	658655.HMPREF0988_00916	159.0	0	N/A	N/A
eggNOG-mapper	UHGV-0128223_29	658655.HMPREF0988_00917	57.8	0.000000179	N/A	N/A
PHROG	UHGV-0128223_31	phrog_21718	45.9	0.00000000000073	N/A	unknown function
PHROG	UHGV-0128223_33	phrog_881	80.5	1.2e-23	holin	lysis
UniRef90	UHGV-0128223_33	UniRef90_A0A4Q7P349	100.0	1.51e-26	Dp-1 family holin	N/A
eggNOG-mapper	UHGV-0128223_33	742740.HMPREF9474_02251	100.0	2.75e-27	Putative phage holin Dp-1	N/A
Pfam	UHGV-0128223_33	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0128223_33	PF16938	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_34	phrog_1863	49.9	0.000000000000036	N/A	unknown function
UniRef90	UHGV-0128223_34	UniRef90_A0A7X2Z1D1	93.2	8.52e-23	t-SNARE coiled-coil homology domain-containing protein	N/A
eggNOG-mapper	UHGV-0128223_34	1122918.KB907250_gene3599	92.0	4.08e-23	N/A	N/A
KOfam	UHGV-0128223_35	K19303	57.8	2.5e-16	mepH; murein DD-endopeptidase [EC:3.4.-.-]	N/A
PHROG	UHGV-0128223_35	phrog_329	50.1	0.000000000000011	minor tail protein	tail
UniRef90	UHGV-0128223_35	UniRef90_A0A2V2EEK9	190.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0128223_35	755731.Clo1100_1179	97.8	1.17e-21	cysteine-type peptidase activity	N/A
Pfam	UHGV-0128223_35	PF00877	N/A	N/A	NlpC/P60 family	NLPC_P60
Pfam	UHGV-0128223_35	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-0128223_35	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0128223_35	PF00877,PF01471,NF033743,COG0791	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0128223_36	PF12988	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0128223_37	PF14600,COG3979	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_41	K19721	198.7	0	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0128223_41	phrog_819	109.9	0	tail protein	tail
eggNOG-mapper	UHGV-0128223_41	1519439.JPJG01000060_gene1892	83.6	0.000000000000171	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-0128223_41	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0128223_41	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-0128223_44	phrog_6616	131.3	6.7e-39	tail protein	tail
UniRef90	UHGV-0128223_44	UniRef90_A0A1M7NJ96	117.0	2.29e-23	Chaperone of endosialidase	N/A
eggNOG-mapper	UHGV-0128223_44	1232453.BAIF02000059_gene1614	76.3	0.0000000000105	N/A	N/A
Pfam	UHGV-0128223_44	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-0128223_44	PF05113,NF033848,COG3500	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0128223_45	1280696.ATVY01000086_gene2001	78.2	0.0000000000000313	N/A	N/A
PHROG	UHGV-0128223_46	phrog_1194	83.7	1.7e-24	N/A	unknown function
eggNOG-mapper	UHGV-0128223_46	1000588.HMPREF9965_1690	57.0	0.00000000921	N/A	N/A
Pfam	UHGV-0128223_46	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0128223_46	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_47	phrog_1535	130.6	2.8026e-45	tail length tape measure protein	tail
UniRef90	UHGV-0128223_47	UniRef90_S9TWQ7	82.0	0.00000000000385	Phage-like protein	N/A
eggNOG-mapper	UHGV-0128223_47	1122918.KB907248_gene4489	87.0	0.0000000000000181	minor tail protein	N/A
COG	UHGV-0128223_47	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_52	phrog_5	43.1	0.000000000011	tail completion or Neck1 protein	connector
UniRef90	UHGV-0128223_52	UniRef90_A0A6H1F582	56.6	0.000000208	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0128223_52	562981.HMPREF0428_01816	56.6	0.0000000366	N/A	N/A
PHROG	UHGV-0128223_56	phrog_1328	163.4	0	major head protein	head and packaging
UniRef90	UHGV-0128223_56	UniRef90_A0A7C7ERB8	282.0	0	N/A	N/A
eggNOG-mapper	UHGV-0128223_56	665956.HMPREF1032_03619	237.0	0	N/A	N/A
Pfam	UHGV-0128223_56	PF17236	N/A	N/A	N/A	DUF5309
structural_annotation	UHGV-0128223_56	PF17236,MF_04119,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0128223_57	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_58	phrog_64	190.8	0	portal protein	head and packaging
UniRef90	UHGV-0128223_58	UniRef90_UPI001CD71C56	121.0	3.33e-26	phage portal protein	N/A
Pfam	UHGV-0128223_58	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0128223_58	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_59	K06909	286.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0128223_59	phrog_5653	117.8	5.4e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0128223_59	UniRef90_H2J4B5	274.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-0128223_59	443254.Marpi_0320	274.0	0	Terminase RNAseH like domain	N/A
Pfam	UHGV-0128223_59	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0128223_59	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0128223_59	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0128223_59	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0128223_59	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0128223_61	UniRef90_A0A345MLR2	58.5	0.00000000684	Chromosome partitioning protein	N/A
Pfam	UHGV-0128223_63	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
structural_annotation	UHGV-0128223_63	PF21291,TIGR02607,COG3093	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_64	phrog_13890	67.6	1.4e-19	N/A	unknown function
UniRef90	UHGV-0128223_64	UniRef90_A0A845MW17	57.0	0.00000000158	Arc family DNA-binding protein	N/A
eggNOG-mapper	UHGV-0128223_64	97139.C824_00677	57.0	0.000000000544	N/A	N/A
structural_annotation	UHGV-0128223_64	PF10723,NF010256,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_69	phrog_13126	338.5	0	beta-1,4-glycosyltransferase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0128223_69	UniRef90_A0A1Q6Q8L1	353.0	0	Glycosyl transferase family 2	N/A
eggNOG-mapper	UHGV-0128223_69	1226322.HMPREF1545_03849	344.0	0	Glycosyl transferase, family 2	N/A
Pfam	UHGV-0128223_69	PF00535	N/A	N/A	Glycosyl transferase family 2	Glycos_transf_2
Pfam	UHGV-0128223_69	PF14559	N/A	N/A	Tetratricopeptide repeat	TPR_19
Pfam	UHGV-0128223_69	PF07719	N/A	N/A	Tetratricopeptide repeat	TPR_2
COG	UHGV-0128223_69	COG0463	N/A	N/A	Glycosyltransferase involved in cell wall bisynthesis	N/A
structural_annotation	UHGV-0128223_69	PF18768,PF13641,MF_00994,MF_00316,TIGR04195,COG0457,COG0463	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_70	K07741	131.2	1.8e-38	antB; anti-repressor protein	N/A
PHROG	UHGV-0128223_70	phrog_130	265.0	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0128223_70	UniRef90_A0A4R1S4N0	324.0	0	Prophage antirepressor-like protein	N/A
eggNOG-mapper	UHGV-0128223_70	563192.HMPREF0179_02955	274.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0128223_70	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0128223_70	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0128223_70	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0128223_70	PF03374,PF02498,TIGR02681,COG3617,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0128223_71	PF05263,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0128223_72	K22300	45.7	0.0000000000014	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0128223_72	phrog_8	57.4	3.8e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0128223_72	UniRef90_UPI000C081F44	62.0	0.0000000000255	helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0128223_72	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0128223_72	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
Pfam	UHGV-0128223_73	PF20037	N/A	N/A	N/A	DUF6440
structural_annotation	UHGV-0128223_73	PF20037	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_74	phrog_924	50.7	0.00000000000004	N/A	unknown function
UniRef90	UHGV-0128223_74	UniRef90_UPI001873F304	54.3	0.0000000228	N/A	N/A
Pfam	UHGV-0128223_74	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0128223_74	NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_75	phrog_22543	48.0	0.00000000000017	N/A	unknown function
PHROG	UHGV-0128223_78	phrog_2164	58.1	1.4e-16	N/A	unknown function
PHROG	UHGV-0128223_79	phrog_7704	48.1	0.00000000000023	N/A	unknown function
UniRef90	UHGV-0128223_79	UniRef90_X0VL21	53.9	0.0000000436	N/A	N/A
eggNOG-mapper	UHGV-0128223_79	1316932.MHH_c17560	49.3	0.0000032	N/A	N/A
Pfam	UHGV-0128223_79	PF04448	N/A	N/A	N/A	DUF551
structural_annotation	UHGV-0128223_79	PF04448,NF041588	N/A	N/A	N/A	N/A
PHROG	UHGV-0128223_84	phrog_22543	44.0	0.0000000000045	N/A	unknown function

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0128223	Yes	45,400	50	100	1
UHGV-1338621	No	45,400	50	100	1
UHGV-1377237	No	44,028	49	100	1
UHGV-1383596	No	43,304	50	100	1
UHGV-1452931	No	43,048	50	95	1
UHGV-1492447	No	42,752	50	94	1
UHGV-0051551	No	42,506	49	94	1
UHGV-0066773	No	41,034	49	91	1
UHGV-1438936	No	37,672	49	83	1
UHGV-0349666	No	37,137	48	82	1
UHGV-1466162	No	35,631	50	79	1
UHGV-0103916	No	33,735	49	75	1
UHGV-1468214	No	33,735	49	75	1
UHGV-2138753	No	23,659	49	52	1
UHGV-1750136	No	22,439	49	50	1
UHGV-1547707	No	21,993	49	49	1
UHGV-1177198	No	21,639	49	48	1
UHGV-1766304	No	15,565	48	34	1
UHGV-1074379	No	15,229	49	34	1
UHGV-1019198	No	15,133	49	33	1
UHGV-1649498	No	14,219	48	31	1
UHGV-0176429	No	10,636	48	23	1