vOTU vOTU-004450

vOTU: vOTU-004450

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004450
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-01811 → vGENUS-01977 → vSUBGEN-09092 → vOTU-004450
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-272 → CAG-272 sp000433515
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2140390
Biosample ID	SAMEA3449184
Genome length (bp)	40,004 bps
CheckV completeness	100.00% (Complete)
CDS count	67
CDS density	92.44%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → CAG-272 → CAG-272 → CAG-272 sp000433515	Total connections	97	Host agreement	98.97
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-2140390_1	318464.IO99_07375	76.3	9.88e-17	N/A	N/A
KOfam	UHGV-2140390_4	K03497	75.1	1.6e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-2140390_4	phrog_620	165.0	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2140390_4	UniRef90_UPI001C389DC7	179.0	0	N/A	N/A
eggNOG-mapper	UHGV-2140390_4	1423758.BN55_01455	166.0	0	DNA methylase	N/A
PADLOC	UHGV-2140390_4	MTase_II_00015	86.4	5.8e-25	Type II methyltransferase	RM
Pfam	UHGV-2140390_4	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-2140390_4	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-2140390_4	PF02195,MF_02015,TIGR00180,COG5119	N/A	N/A	N/A	N/A
KOfam	UHGV-2140390_5	K06909	422.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-2140390_5	phrog_3717	187.9	0	terminase large subunit	head and packaging
UniRef90	UHGV-2140390_5	UniRef90_A0A1C7I418	592.0	0	Terminase	N/A
eggNOG-mapper	UHGV-2140390_5	33035.JPJF01000106_gene3136	596.0	0	Terminase small subunit	N/A
Pfam	UHGV-2140390_5	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-2140390_5	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-2140390_5	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-2140390_5	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-2140390_5	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_6	phrog_533	280.3	0	portal protein	head and packaging
UniRef90	UHGV-2140390_6	UniRef90_A0A1C5MB20	537.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-2140390_6	33035.JPJF01000106_gene3135	433.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-2140390_6	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_7	phrog_581	240.5	0	minor head protein	head and packaging
UniRef90	UHGV-2140390_7	UniRef90_R6TYJ5	738.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-2140390_7	476272.RUMHYD_01761	367.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-2140390_7	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-2140390_7	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2140390_7	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_9	phrog_3754	109.7	2.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-2140390_9	476272.RUMHYD_01764	202.0	0	N/A	N/A
PHROG	UHGV-2140390_10	phrog_21718	92.7	3.3e-27	N/A	unknown function
eggNOG-mapper	UHGV-2140390_10	397290.C810_05210	94.7	9.17e-23	N/A	N/A
PHROG	UHGV-2140390_11	phrog_22984	77.2	1.8e-22	N/A	unknown function
PHROG	UHGV-2140390_12	phrog_16490	198.6	0	N/A	unknown function
eggNOG-mapper	UHGV-2140390_12	658655.HMPREF0988_00917	198.0	0	N/A	N/A
PHROG	UHGV-2140390_13	phrog_20016	173.7	0	N/A	unknown function
UniRef90	UHGV-2140390_13	UniRef90_A0A2Z4QB67	176.0	0	Carbohydrate binding domain/collagen triple helix repeat protein	N/A
eggNOG-mapper	UHGV-2140390_13	1226322.HMPREF1545_00077	163.0	0	N/A	N/A
structural_annotation	UHGV-2140390_13	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_14	phrog_28802	67.0	6.8e-37	N/A	unknown function
eggNOG-mapper	UHGV-2140390_14	476272.RUMHYD_01772	133.0	1.37e-37	N/A	N/A
PHROG	UHGV-2140390_15	phrog_194	81.3	1.5e-23	head scaffolding protein	head and packaging
UniRef90	UHGV-2140390_15	UniRef90_UPI001D14C9C8	123.0	1.05e-31	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-2140390_15	476272.RUMHYD_01775	136.0	2.38e-37	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-2140390_15	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-2140390_16	phrog_544	146.6	1.30321e-43	major head protein	head and packaging
UniRef90	UHGV-2140390_16	UniRef90_A0A395X7A1	570.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-2140390_16	1232453.BAIF02000011_gene3359	390.0	0	N/A	N/A
Pfam	UHGV-2140390_16	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-2140390_16	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_17	phrog_541	80.5	1.7e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-2140390_17	1235790.C805_00076	133.0	2.67e-37	N/A	N/A
PHROG	UHGV-2140390_18	phrog_3366	97.8	9.5e-29	N/A	unknown function
eggNOG-mapper	UHGV-2140390_18	476272.RUMHYD_01779	158.0	0	N/A	N/A
structural_annotation	UHGV-2140390_18	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_19	phrog_556	70.2	2.2e-20	minor head protein	head and packaging
UniRef90	UHGV-2140390_19	UniRef90_UPI000E4989EB	135.0	1.6e-37	minor capsid protein	N/A
eggNOG-mapper	UHGV-2140390_19	476272.RUMHYD_01780	160.0	0	N/A	N/A
Pfam	UHGV-2140390_19	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-2140390_19	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_20	phrog_3266	76.7	2.6e-22	tail completion	connector
eggNOG-mapper	UHGV-2140390_20	476272.RUMHYD_01781	173.0	0	N/A	N/A
structural_annotation	UHGV-2140390_20	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_21	phrog_3099	151.9	2.8026e-45	N/A	unknown function
eggNOG-mapper	UHGV-2140390_21	411902.CLOBOL_00129	187.0	0	N/A	N/A
structural_annotation	UHGV-2140390_21	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_22	phrog_11299	88.1	9.4e-26	N/A	unknown function
eggNOG-mapper	UHGV-2140390_22	665956.HMPREF1032_03059	67.0	0.00000000000383	N/A	N/A
structural_annotation	UHGV-2140390_22	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_23	phrog_706	132.7	2.2e-39	N/A	unknown function
UniRef90	UHGV-2140390_23	UniRef90_A0A1C5M8I2	253.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-2140390_23	411459.RUMOBE_01383	212.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-2140390_23	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-2140390_23	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_24	phrog_1535	95.5	3.99931e-42	tail length tape measure protein	tail
UniRef90	UHGV-2140390_24	UniRef90_A0A1C6CG40	243.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-2140390_24	411459.RUMOBE_01384	116.0	1.67e-23	phage tail tape measure protein	N/A
COG	UHGV-2140390_24	COG5412	N/A	N/A	Phage-related protein	N/A
PHROG	UHGV-2140390_25	phrog_1194	62.0	9.2e-18	N/A	unknown function
Pfam	UHGV-2140390_25	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-2140390_25	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_26	phrog_6616	282.9	0	tail protein	tail
UniRef90	UHGV-2140390_26	UniRef90_A0A3D3U8S7	278.0	0	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-2140390_26	33035.JPJF01000043_gene1002	205.0	0	N/A	N/A
structural_annotation	UHGV-2140390_26	PF05113,NF033848,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_27	phrog_372	136.4	1.2e-40	tail protein	tail
UniRef90	UHGV-2140390_27	UniRef90_UPI001E5C78A4	86.7	0.0000000000000508	N/A	N/A
eggNOG-mapper	UHGV-2140390_27	658088.HMPREF0987_01104	77.4	0.00000000000651	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-2140390_27	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-2140390_27	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-2140390_27	PF05895,MF_04116,NF010681,COG3291	N/A	N/A	N/A	N/A
structural_annotation	UHGV-2140390_28	PF20010	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_29	phrog_35892	55.0	9.6e-31	N/A	unknown function
Pfam	UHGV-2140390_29	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
PHROG	UHGV-2140390_31	phrog_37604	156.6	0	N/A	unknown function
eggNOG-mapper	UHGV-2140390_31	1232443.BAIA02000078_gene10	125.0	2.17e-34	N/A	N/A
PHROG	UHGV-2140390_32	phrog_1129	68.3	7.5e-20	holin	lysis
UniRef90	UHGV-2140390_32	UniRef90_A0A3D4QXE9	140.0	1.79002e-41	Enolase	N/A
eggNOG-mapper	UHGV-2140390_32	742740.HMPREF9474_03522	124.0	5.35e-36	N/A	N/A
Pfam	UHGV-2140390_32	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-2140390_32	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-2140390_33	K01447	55.4	0.0000000000000012	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-2140390_33	phrog_15001	126.7	2e-37	endolysin	lysis
UniRef90	UHGV-2140390_33	UniRef90_R6U0F7	259.0	0	Putative lipoprotein	N/A
eggNOG-mapper	UHGV-2140390_33	552398.HMPREF0866_01156	162.0	0	Ami_2	N/A
Pfam	UHGV-2140390_33	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-2140390_33	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
KOfam	UHGV-2140390_34	K14059	202.3	0	int; integrase	N/A
PHROG	UHGV-2140390_34	phrog_1	178.4	0	integrase	integration and excision
UniRef90	UHGV-2140390_34	UniRef90_A0A328U998	238.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-2140390_34	1304866.K413DRAFT_1180	216.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-2140390_34	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-2140390_34	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-2140390_34	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-2140390_35	UniRef90_A0A1Q6L177	286.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-2140390_35	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-2140390_35	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_39	phrog_10292	53.9	0.0000000000000027	N/A	unknown function
UniRef90	UHGV-2140390_39	UniRef90_A0A847W9D6	107.0	3.54e-27	TM2 domain-containing protein	N/A
eggNOG-mapper	UHGV-2140390_39	445972.ANACOL_01855	85.1	9.83e-20	TM2 domain	N/A
Pfam	UHGV-2140390_39	PF05154	N/A	N/A	TM2 domain	TM2
COG	UHGV-2140390_39	COG2314	N/A	N/A	N/A	N/A
COG	UHGV-2140390_40	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-2140390_40	PF01381,MF_00535,NF007257,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-2140390_42	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
PHROG	UHGV-2140390_46	phrog_253	109.0	3.8e-32	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2140390_46	UniRef90_C7GC36	87.4	7.81e-19	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-2140390_46	1226322.HMPREF1545_04074	100.0	1.43e-24	Siphovirus Gp157	N/A
Pfam	UHGV-2140390_46	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-2140390_46	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_47	phrog_14970	254.8	0	N/A	unknown function
eggNOG-mapper	UHGV-2140390_47	748727.CLJU_c18560	184.0	0	double-strand break repair protein	N/A
Pfam	UHGV-2140390_47	PF04098	N/A	N/A	Rad52/22 family double-strand break repair protein	Rad52_Rad22
COG	UHGV-2140390_47	COG4712	N/A	N/A	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	N/A
structural_annotation	UHGV-2140390_47	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_48	phrog_72	65.9	5.9e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2140390_48	UniRef90_A0A8D9PDS2	152.0	5.74532e-44	NinB protein	N/A
eggNOG-mapper	UHGV-2140390_48	445972.ANACOL_01825	122.0	1.06e-32	N/A	N/A
structural_annotation	UHGV-2140390_48	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_50	phrog_4973	47.8	0.00000000000022	N/A	unknown function
Pfam	UHGV-2140390_50	PF14090	N/A	N/A	Helix-turn-helix domain	HTH_39
structural_annotation	UHGV-2140390_50	PF14090,NF040939,COG4738	N/A	N/A	N/A	N/A
KOfam	UHGV-2140390_51	K03111	133.7	2.1e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-2140390_51	phrog_44	144.3	6.89439e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2140390_51	UniRef90_R6TSJ9	171.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-2140390_51	445972.ANACOL_04434	119.0	3.67e-32	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-2140390_51	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-2140390_51	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-2140390_51	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-2140390_51	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-2140390_51	PF00436,MF_00984,NF005579,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_52	phrog_20437	167.7	0	DNA replication initiation	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2140390_52	UniRef90_H5XZX0	154.0	7.27975e-42	N/A	N/A
eggNOG-mapper	UHGV-2140390_52	768710.DesyoDRAFT_5236	154.0	1.22053e-42	DnaD domain protein	N/A
Pfam	UHGV-2140390_52	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-2140390_52	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-2140390_52	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-2140390_54	K17680	336.3	0	PEO1; twinkle protein [EC:5.6.2.3]	N/A
PHROG	UHGV-2140390_54	phrog_239	289.3	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2140390_54	UniRef90_A0A413G4P8	558.0	0	SF4 helicase domain-containing protein	N/A
eggNOG-mapper	UHGV-2140390_54	247490.KSU1_C0210	332.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-2140390_54	PF13155	N/A	N/A	Toprim-like	Toprim_2
Pfam	UHGV-2140390_54	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-2140390_54	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-2140390_54	PF03796,PF19898,MF_04154,TIGR03877,TIGR01391,COG0467,COG0358	N/A	N/A	N/A	N/A
KOfam	UHGV-2140390_56	K00390	60.7	6.9e-18	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-2140390_56	phrog_424	137.0	1.2e-40	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-2140390_56	UniRef90_A0A3D4KZM8	350.0	0	PAPS_reduct domain-containing protein	N/A
eggNOG-mapper	UHGV-2140390_56	665956.HMPREF1032_00140	296.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
Pfam	UHGV-2140390_56	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-2140390_56	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-2140390_56	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_57	phrog_190	110.2	1.8e-32	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-2140390_57	UniRef90_A0A4P8JTL4	129.0	1.18e-36	N/A	N/A
eggNOG-mapper	UHGV-2140390_57	742767.HMPREF9456_03412	92.0	9.15e-23	N/A	N/A
Pfam	UHGV-2140390_57	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-2140390_57	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-2140390_61	phrog_2245	90.3	2.1e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-2140390_61	UniRef90_A0A4U9RLZ8	68.2	0.000000000000486	N/A	N/A
eggNOG-mapper	UHGV-2140390_61	706433.HMPREF9430_01279	75.5	1.33e-16	N/A	N/A
structural_annotation	UHGV-2140390_61	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-2140390_67	330395.Q30L17_9CAUD	49.7	0.000000662	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-2140390	Yes	40,004	51	100	1
UHGV-0099419	No	39,938	51	100	1
UHGV-1530145	No	39,463	51	89	1