vOTU vOTU-004513

vOTU: vOTU-004513

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004513
Number of genomes	3
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00124 → vGENUS-00131 → vSUBGEN-13010 → vOTU-004513
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0309573
Biosample ID	SAMN07521938
Genome length (bp)	41,075 bps
CheckV completeness	100.00% (Complete)
CDS count	66
CDS density	91.77%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	444	Host agreement	98.42
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium → Faecalibacterium prausnitzii	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0309573_1	K07273	87.0	3e-25	acm; lysozyme	N/A
PHROG	UHGV-0309573_1	phrog_291	59.2	8e-17	endolysin	lysis
UniRef90	UHGV-0309573_1	UniRef90_A0A564U0D3	219.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0309573_1	665956.HMPREF1032_02177	94.4	6.31e-21	hydrolase, family 25	N/A
Pfam	UHGV-0309573_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0309573_1	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0309573_1	NF007176	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0309573_3	304371.MCP_2006	76.3	0.0000000000262	extracellular matrix structural constituent	N/A
PHROG	UHGV-0309573_5	phrog_1067	168.8	0	minor head protein	head and packaging
UniRef90	UHGV-0309573_5	UniRef90_A0A2A7AM44	706.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_5	1123263.AUKY01000068_gene489	192.0	0	Phage minor structural protein	N/A
Pfam	UHGV-0309573_5	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0309573_5	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0309573_5	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0309573_5	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_6	phrog_33	74.5	2.5e-21	distal tail protein Dit	tail
UniRef90	UHGV-0309573_6	UniRef90_A0A173Z1X4	144.0	4.9e-39	Phage-related protein	N/A
eggNOG-mapper	UHGV-0309573_6	748727.CLJU_c03670	92.4	6.81e-20	tail component	N/A
NCBIFam	UHGV-0309573_6	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0309573_6	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0309573_6	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_7	phrog_9959	87.1	1.1e-25	tail length tape measure protein	tail
UniRef90	UHGV-0309573_7	UniRef90_A0A2A7ALS3	879.0	0	TMP_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_7	596328.HMPREF0578_1241	160.0	1.67e-37	phage tail tape measure protein	N/A
Pfam	UHGV-0309573_7	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0309573_7	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0309573_7	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0309573_7	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_10	phrog_88	89.3	4.7e-26	major tail protein	tail
UniRef90	UHGV-0309573_10	UniRef90_G9YSC5	103.0	3.85e-24	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0309573_10	349161.Dred_2600	62.4	0.00000000491	N/A	N/A
NCBIFam	UHGV-0309573_10	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0309573_10	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_11	phrog_5	45.9	0.00000000000054	tail completion or Neck1 protein	connector
UniRef90	UHGV-0309573_11	UniRef90_A0A1C6FG30	115.0	1.37e-29	Phage protein, HK97 gp10 family	N/A
eggNOG-mapper	UHGV-0309573_11	908340.HMPREF9406_2573	110.0	2.49e-28	N/A	N/A
structural_annotation	UHGV-0309573_11	TIGR01725	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0309573_12	999413.HMPREF1094_02005	69.7	0.0000000000000501	N/A	N/A
structural_annotation	UHGV-0309573_12	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_13	phrog_19734	95.1	6.2e-28	N/A	unknown function
UniRef90	UHGV-0309573_13	UniRef90_A0A0D8I708	81.6	2.28e-17	Phage head-tail joining protein	N/A
eggNOG-mapper	UHGV-0309573_13	349161.Dred_2602	75.9	6.69e-16	N/A	N/A
structural_annotation	UHGV-0309573_13	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_14	phrog_749	54.5	0.0000000000000018	N/A	unknown function
eggNOG-mapper	UHGV-0309573_14	1211817.CCAT010000053_gene2133	62.0	0.0000000000493	N/A	N/A
PHROG	UHGV-0309573_15	phrog_10	132.5	2.3e-39	major head protein	head and packaging
UniRef90	UHGV-0309573_15	UniRef90_A0A2A7B712	708.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0309573_15	1235792.C808_00086	437.0	0	Phage capsid family	N/A
Pfam	UHGV-0309573_15	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
Pfam	UHGV-0309573_15	PF12733	N/A	N/A	Cadherin-like beta sandwich domain	Cadherin-like
NCBIFam	UHGV-0309573_15	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0309573_15	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0309573_15	PF05065,PF12733,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0309573_16	K01358	76.5	4.6e-22	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0309573_16	phrog_94	128.3	8.7e-38	head maturation protease	head and packaging
UniRef90	UHGV-0309573_16	UniRef90_UPI00111E41DA	136.0	6.01e-36	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0309573_16	1232452.BAIB02000007_gene1626	127.0	4.84e-33	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0309573_16	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0309573_16	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0309573_16	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_17	phrog_12	123.5	1.6e-36	portal protein	head and packaging
UniRef90	UHGV-0309573_17	UniRef90_A0A2A7B6S8	550.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0309573_17	349161.Dred_2606	257.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0309573_17	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0309573_17	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0309573_17	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0309573_17	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_18	phrog_9	240.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0309573_18	UniRef90_A0A2A7ALT4	1047.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0309573_18	610130.Closa_0741	627.0	0	Phage Terminase	N/A
Pfam	UHGV-0309573_18	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0309573_18	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0309573_18	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_19	phrog_13845	53.1	0.0000000000000044	N/A	unknown function
eggNOG-mapper	UHGV-0309573_19	1399942.U3PDR2_9CAUD	63.2	0.0000000000355	N/A	N/A
structural_annotation	UHGV-0309573_19	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_20	phrog_119	58.6	9.6e-17	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309573_20	UniRef90_A0A2A7B6I3	232.0	0	HNH domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_20	610130.Closa_0739	108.0	3.13e-29	HNH nucleases	N/A
Pfam	UHGV-0309573_20	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0309573_20	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0309573_21	phrog_21498	301.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0309573_21	78346.BRUM_0376	270.0	0	DNA binding	N/A
COG	UHGV-0309573_21	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0309573_21	PF05869,TIGR01712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0309573_26	PF04545	N/A	N/A	N/A	N/A
KOfam	UHGV-0309573_27	K03497	89.7	5.7e-26	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0309573_27	phrog_4715	114.6	7.5e-34	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309573_27	UniRef90_A0A2A7AMC5	286.0	0	ParB domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_27	411471.SUBVAR_05842	179.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0309573_27	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0309573_27	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0309573_27	PF02195,MF_02015,TIGR03764,COG1475	N/A	N/A	N/A	N/A
UniRef90	UHGV-0309573_28	UniRef90_A0A845R8R0	107.0	1.59e-27	N/A	N/A
KOfam	UHGV-0309573_29	K03496	206.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0309573_29	phrog_164	155.0	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309573_29	UniRef90_A0A2A7B6H3	353.0	0	AAA_31 domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_29	411471.SUBVAR_05839	225.0	0	AAA domain	N/A
Pfam	UHGV-0309573_29	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0309573_29	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0309573_29	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
UniRef90	UHGV-0309573_31	UniRef90_UPI001CBE86CE	156.0	0	N/A	N/A
eggNOG-mapper	UHGV-0309573_31	748224.HMPREF9436_00735	155.0	1.4013e-45	N/A	N/A
Pfam	UHGV-0309573_31	PF19481	N/A	N/A	N/A	DUF6017
COG	UHGV-0309573_31	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0309573_32	phrog_6969	60.6	2.6e-17	N/A	unknown function
UniRef90	UHGV-0309573_32	UniRef90_UPI001BA4B312	56.2	0.00000264	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_32	1232446.BAIE02000002_gene816	75.5	0.0000000000000373	N/A	N/A
Pfam	UHGV-0309573_32	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
KOfam	UHGV-0309573_33	K03111	147.4	1.4013e-43	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0309573_33	phrog_44	152.1	2.8026e-45	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0309573_33	UniRef90_D4K451	209.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0309573_33	748224.HMPREF9436_00638	212.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0309573_33	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0309573_33	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0309573_33	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0309573_33	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0309573_33	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_34	phrog_7566	86.7	1.7e-25	N/A	unknown function
eggNOG-mapper	UHGV-0309573_34	411471.SUBVAR_05830	107.0	7.58e-29	N/A	N/A
PHROG	UHGV-0309573_36	phrog_72	47.4	0.00000000000037	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0309573_36	411471.SUBVAR_05829	136.0	4.16e-38	N/A	N/A
structural_annotation	UHGV-0309573_36	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_37	phrog_14970	44.9	0.0000000000021	N/A	unknown function
structural_annotation	UHGV-0309573_37	PF04098,TIGR00607,COG4712	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0309573_41	PF10346,MF_00337,NF010671	N/A	N/A	N/A	N/A
Pfam	UHGV-0309573_44	PF12773	N/A	N/A	Double zinc ribbon	DZR
structural_annotation	UHGV-0309573_46	PF21291,TIGR03070,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0309573_47	UniRef90_A0A2A7AM72	117.0	3.43e-32	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_47	1378168.N510_01712	77.8	5.82e-16	N/A	N/A
structural_annotation	UHGV-0309573_47	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0309573_49	COG5342	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_52	phrog_1373	42.3	0.0000000000054	transcriptional regulator	transcription regulation
UniRef90	UHGV-0309573_52	UniRef90_A0A2A7AM70	188.0	0	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-0309573_52	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0309573_52	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0309573_52	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0309573_53	K14059	182.4	0	int; integrase	N/A
PHROG	UHGV-0309573_53	phrog_1	166.9	0	integrase	integration and excision
UniRef90	UHGV-0309573_53	UniRef90_A0A367GI93	218.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0309573_53	1507.HMPREF0262_00307	162.0	1.80768e-43	Phage integrase family	N/A
Pfam	UHGV-0309573_53	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0309573_53	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0309573_53	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0309573_54	1408437.JNJN01000043_gene801	98.2	1.15e-22	N/A	N/A
eggNOG-mapper	UHGV-0309573_55	658655.HMPREF0988_00916	120.0	3.02e-33	N/A	N/A
PHROG	UHGV-0309573_56	phrog_16490	104.2	2.9e-40	N/A	unknown function
eggNOG-mapper	UHGV-0309573_56	1408437.JNJN01000043_gene803	162.0	0	N/A	N/A
KOfam	UHGV-0309573_60	K22300	63.9	5.1e-22	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0309573_60	phrog_8	60.1	5.5e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0309573_60	UniRef90_A0A4R2LEB7	65.9	0.000000000683	DNA-binding XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0309573_60	1235790.C805_00648	60.5	0.00000000681	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0309573_60	retron_type_VI_hth_cluster2_1	45.4	0.00000000000013	N/A	Retron
Pfam	UHGV-0309573_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0309573_60	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0309573_60	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0309573_62	PF07374,MF_00245,NF001072,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0309573_64	phrog_15303	83.5	1.9e-24	N/A	unknown function
PHROG	UHGV-0309573_65	phrog_1863	75.8	3e-22	N/A	unknown function
eggNOG-mapper	UHGV-0309573_65	718252.FP2_04900	145.0	8.40779e-45	N/A	N/A
KOfam	UHGV-0309573_66	K07273	65.4	1.1e-18	acm; lysozyme	N/A
PHROG	UHGV-0309573_66	phrog_6219	51.3	0.000000000000025	endolysin	lysis
UniRef90	UHGV-0309573_66	UniRef90_A0A1V5G9J3	54.7	0.000000406	Glycosyl hydrolases family 25	N/A
eggNOG-mapper	UHGV-0309573_66	718252.FP2_04890	144.0	9.02997e-41	hydrolase, family 25	N/A
Pfam	UHGV-0309573_66	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0309573_66	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0309573	Yes	41,075	53	100	1
UHGV-0271969	No	41,057	53	100	1
UHGV-1396151	No	32,421	52	79	1