vOTU vOTU-004839

vOTU: vOTU-004839

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004839
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00556 → vGENUS-02008 → vSUBGEN-37291 → vOTU-004839
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1381505
Biosample ID	N/A
Genome length (bp)	43,347 bps
CheckV completeness	100.00% (Complete)
CDS count	54
CDS density	92.44%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus	Total connections	63	Host agreement	79.37
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → Limivicinus → Limivicinus sp900547315	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1381505_1	K06909	123.2	2.6e-36	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1381505_1	phrog_979	105.8	9.5e-33	terminase large subunit	head and packaging
UniRef90	UHGV-1381505_1	UniRef90_A0A3C0NMI6	594.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1381505_1	1410650.JHWL01000003_gene2834	569.0	0	N/A	N/A
Pfam	UHGV-1381505_1	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-1381505_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1381505_1	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_2	phrog_156	283.8	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1381505_2	1410650.JHWL01000003_gene2833	514.0	0	N/A	N/A
structural_annotation	UHGV-1381505_2	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-1381505_3	K07584	49.3	0.0000000000001	N/A	N/A
PHROG	UHGV-1381505_3	phrog_4478	41.0	0.000000000021	peptidase	other
eggNOG-mapper	UHGV-1381505_3	1009370.ALO_08023	54.3	0.0000000722	Cysteine protease Prp	N/A
Pfam	UHGV-1381505_3	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1381505_3	COG2868	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1381505_3	PF04327,NF011133,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_4	phrog_13908	294.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1381505_4	1410650.JHWL01000003_gene2831	151.0	7.47999e-41	N/A	N/A
PHROG	UHGV-1381505_5	phrog_1357	273.2	0	major head protein	head and packaging
UniRef90	UHGV-1381505_5	UniRef90_A0A2V2GQW4	424.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1381505_5	748224.HMPREF9436_01399	367.0	0	N/A	N/A
Pfam	UHGV-1381505_5	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1381505_5	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1381505_5	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_6	phrog_15239	60.1	3.4e-17	N/A	unknown function
PHROG	UHGV-1381505_7	phrog_12105	118.4	3.8e-35	N/A	unknown function
eggNOG-mapper	UHGV-1381505_7	1519439.JPJG01000060_gene1891	64.3	0.0000000000162	N/A	N/A
PHROG	UHGV-1381505_8	phrog_511	237.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1381505_8	1410650.JHWL01000003_gene2827	324.0	0	N/A	N/A
structural_annotation	UHGV-1381505_8	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_10	phrog_372	116.7	1.8e-34	tail protein	tail
UniRef90	UHGV-1381505_10	UniRef90_UPI001EDDCD01	107.0	1.27e-20	N/A	N/A
eggNOG-mapper	UHGV-1381505_10	1399942.U3PFX4_9CAUD	75.9	0.0000000000203	peptidoglycan catabolic process	N/A
Pfam	UHGV-1381505_10	PF05895	N/A	N/A	N/A	DUF859
structural_annotation	UHGV-1381505_10	PF05895,MF_04116,NF010681,COG3401,COG4675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1381505_11	1410650.JHWL01000003_gene2815	134.0	6.65e-33	N/A	N/A
PHROG	UHGV-1381505_12	phrog_22978	385.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1381505_12	1123288.SOV_4c02780	1170.0	0	protein secretion by the type IV secretion system	N/A
Pfam	UHGV-1381505_12	PF13872	N/A	N/A	P-loop containing NTP hydrolase pore-1	AAA_34
Pfam	UHGV-1381505_12	PF13871	N/A	N/A	C-terminal domain on Strawberry notch homologue	Helicase_C_4
COG	UHGV-1381505_12	COG0503	N/A	N/A	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	N/A
PHROG	UHGV-1381505_15	phrog_1493	56.6	6e-16	endolysin	lysis
UniRef90	UHGV-1381505_15	UniRef90_A0A1C6GMR6	194.0	0	NlpC/P60 family	N/A
eggNOG-mapper	UHGV-1381505_15	394503.Ccel_3272	117.0	2.14e-29	NLP P60 protein	N/A
Pfam	UHGV-1381505_15	PF01471	N/A	N/A	Putative peptidoglycan binding domain	PG_binding_1
COG	UHGV-1381505_15	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1381505_15	PF01471,PF00877,NF033742,NF038080,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_16	phrog_937	62.9	6e-18	hemolysin	other
eggNOG-mapper	UHGV-1381505_16	1519439.JPJG01000023_gene533	86.7	6.69e-21	N/A	N/A
PHROG	UHGV-1381505_17	phrog_1129	68.9	5.5e-20	holin	lysis
UniRef90	UHGV-1381505_17	UniRef90_A0A2V2CUX8	129.0	2.91e-37	Enolase	N/A
eggNOG-mapper	UHGV-1381505_17	1226322.HMPREF1545_00069	119.0	2.5e-34	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1381505_17	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1381505_17	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381505_18	UniRef90_A0A8D9PDT6	86.3	2.43e-20	Transcriptional regulatory protein	N/A
structural_annotation	UHGV-1381505_19	PF20477,NF033819	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_20	phrog_22984	42.5	0.000000000012	N/A	unknown function
structural_annotation	UHGV-1381505_22	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-1381505_23	UniRef90_A0A843GWV6	86.3	6.98e-20	Rubrerythrin domain-containing protein	N/A
Pfam	UHGV-1381505_23	PF02915	N/A	N/A	Rubrerythrin	Rubrerythrin
structural_annotation	UHGV-1381505_23	PF02255,NF007156,COG1447	N/A	N/A	N/A	N/A
KOfam	UHGV-1381505_24	K14059	92.1	9.6e-27	int; integrase	N/A
PHROG	UHGV-1381505_24	phrog_1	121.6	7.2e-36	integrase	integration and excision
UniRef90	UHGV-1381505_24	UniRef90_UPI00195CC1EE	440.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1381505_24	411471.SUBVAR_05816	120.0	4.13e-28	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1381505_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1381505_24	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1381505_24	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-1381505_25	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1381505_25	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
NCBIFam	UHGV-1381505_26	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-1381505_26	COG3409	N/A	N/A	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	N/A
KOfam	UHGV-1381505_29	K22300	57.7	2.7e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1381505_29	phrog_2967	47.5	0.00000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-1381505_29	UniRef90_A0A844DFR0	117.0	1.65e-31	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1381505_29	755731.Clo1100_1415	95.5	1.22e-23	DNA-binding helix-turn-helix protein	N/A
PADLOC	UHGV-1381505_29	retron_type_VI_hth_cluster2_1	41.3	0.000000000013	N/A	Retron
Pfam	UHGV-1381505_29	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1381505_29	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1381505_29	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1381505_30	PF02211	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1381505_32	1235835.C814_03153	66.2	0.000000000000148	N/A	N/A
structural_annotation	UHGV-1381505_32	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_36	phrog_2113	43.3	0.0000000000029	N/A	unknown function
UniRef90	UHGV-1381505_36	UniRef90_A0A8D9UH91	109.0	4.72e-27	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1381505_36	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1381505_36	PF01381,PF21715,NF041951,TIGR04176,COG1476,COG1654	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_39	phrog_7838	122.4	3.7e-36	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381505_39	UniRef90_A0A8D9UGW3	186.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-1381505_39	742767.HMPREF9456_02052	161.0	0	N/A	N/A
structural_annotation	UHGV-1381505_39	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
KOfam	UHGV-1381505_40	K03111	140.7	1.6e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1381505_40	phrog_44	139.2	2.50006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381505_40	UniRef90_A0A316NQ75	180.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1381505_40	1007096.BAGW01000023_gene151	168.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-1381505_40	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1381505_40	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1381505_40	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1381505_40	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1381505_40	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_41	phrog_15768	100.5	1.9e-29	N/A	unknown function
UniRef90	UHGV-1381505_41	UniRef90_A0A417QFV0	142.0	3.93e-38	Transcriptional regulator	N/A
eggNOG-mapper	UHGV-1381505_41	411490.ANACAC_00800	135.0	2.82e-36	N/A	N/A
structural_annotation	UHGV-1381505_41	PF01978,NF000243,COG0735	N/A	N/A	N/A	N/A
KOfam	UHGV-1381505_42	K02315	114.5	1.3e-33	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1381505_42	phrog_50	109.0	6e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381505_42	UniRef90_A0A3D0LZW1	172.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-1381505_42	445972.ANACOL_01829	168.0	0	N/A	N/A
Pfam	UHGV-1381505_42	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1381505_42	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
PHROG	UHGV-1381505_43	phrog_72	46.5	0.00000000000034	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1381505_43	UniRef90_A0A2Z4Q9W9	128.0	1.2e-34	NinB	N/A
eggNOG-mapper	UHGV-1381505_43	1304866.K413DRAFT_1197	72.0	0.000000000000176	N/A	N/A
structural_annotation	UHGV-1381505_43	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-1381505_44	phrog_7566	73.2	2.8e-21	N/A	unknown function
eggNOG-mapper	UHGV-1381505_44	693746.OBV_25470	72.0	0.00000000000000671	N/A	N/A
dbAPIS	UHGV-1381505_45	APIS008	N/A	N/A	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	N/A
KOfam	UHGV-1381505_47	K00558	41.1	1.5e-18	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1381505_47	phrog_16528	82.5	4.2e-24	DNA methyltransferase	other
UniRef90	UHGV-1381505_47	UniRef90_D4K5C7	273.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1381505_47	657322.FPR_26610	273.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-1381505_47	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1381505_47	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
Pfam	UHGV-1381505_49	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
structural_annotation	UHGV-1381505_49	PF14354,TIGR03655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1381505_54	1410650.JHWL01000003_gene2834	75.5	0.0000000000000022	N/A	N/A
COG	UHGV-1381505_54	COG1783	N/A	N/A	Phage terminase large subunit	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1381505	Yes	43,347	55	100	1
UHGV-1373166	No	42,841	55	100	1
UHGV-1445778	No	42,899	55	99	1
UHGV-0176395	No	42,507	55	99	1