vOTU vOTU-004897

vOTU: vOTU-004897

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004897
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00040 → vSUBFAM-02408 → vGENUS-02898 → vSUBGEN-25792 → vOTU-004897
Host lineage
Host range breadth
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0176656
Biosample ID	SAMN09781697
Genome length (bp)	36,412 bps
CheckV completeness	100.00% (Complete)
CDS count	52
CDS density	92.37%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method
CRISPR-predicted host lineage	Total connections	Host agreement
PHIST-predicted host lineage	Total connections	Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0176656_1	phrog_20532	99.9	1.7e-29	N/A	unknown function
eggNOG-mapper	UHGV-0176656_1	1280692.AUJL01000012_gene3222	104.0	6.3e-28	N/A	N/A
structural_annotation	UHGV-0176656_1	PF00132	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_2	phrog_253	121.8	5.2e-36	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176656_2	UniRef90_UPI00051BDF29	122.0	1.59e-32	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0176656_2	1449050.JNLE01000005_gene3949	110.0	1.6e-28	Siphovirus Gp157	N/A
Pfam	UHGV-0176656_2	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0176656_2	PF05565,NF002139	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_3	phrog_10056	198.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176656_3	UniRef90_R9KLP4	201.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0176656_3	397290.C810_01467	201.0	0	Phage recombination protein Bet	N/A
Pfam	UHGV-0176656_3	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0176656_3	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0176656_3	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0176656_3	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_4	phrog_15768	103.9	2.2e-30	N/A	unknown function
UniRef90	UHGV-0176656_4	UniRef90_R6RVQ1	119.0	4.07e-29	Chromosome segregation ATPases	N/A
eggNOG-mapper	UHGV-0176656_4	1121344.JHZO01000003_gene982	105.0	1.52e-24	N/A	N/A
AcrCatalog	UHGV-0176656_4	cluster_14472	100.0	2.71e-27	NA	N/A
Pfam	UHGV-0176656_4	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0176656_4	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0176656_6	K03111	153.1	2.8026e-45	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0176656_6	phrog_44	144.7	5.60519e-43	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176656_6	UniRef90_A0A1W1VQW5	165.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0176656_6	1449126.JQKL01000046_gene2063	157.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0176656_6	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0176656_6	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0176656_6	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0176656_6	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0176656_6	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-0176656_7	K01160	54.7	0.0000000000000033	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0176656_7	phrog_34	66.2	6.6e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0176656_7	UniRef90_UPI001CC048CF	163.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0176656_7	525919.Apre_0813	161.0	0	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0176656_7	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0176656_7	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0176656_7	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
COG	UHGV-0176656_8	COG1669	N/A	N/A	Predicted nucleotidyltransferase MJ0435	N/A
PHROG	UHGV-0176656_10	phrog_25385	58.3	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-0176656_10	748224.HMPREF9436_03077	63.9	0.0000000000175	N/A	N/A
structural_annotation	UHGV-0176656_10	PF04012	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176656_12	1120978.KB894087_gene426	58.9	0.00000000266	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0176656_12	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
PHROG	UHGV-0176656_18	phrog_36	81.8	1e-23	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176656_18	UniRef90_A0A174EB71	65.9	0.0000000000599	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	N/A
eggNOG-mapper	UHGV-0176656_18	1121871.AUAT01000030_gene1019	52.4	0.0000013	N/A	N/A
COG	UHGV-0176656_18	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0176656_18	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176656_19	931276.Cspa_c57180	57.8	0.00000000978	DNA-packaging protein gp3	N/A
KOfam	UHGV-0176656_20	K06909	147.9	9.3887e-44	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0176656_20	phrog_2	142.8	4.19969e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0176656_20	UniRef90_A0A2V2EQG3	504.0	0	Terminase_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176656_20	665956.HMPREF1032_03884	415.0	0	Terminase-like family	N/A
Pfam	UHGV-0176656_20	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0176656_20	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0176656_20	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0176656_21	K01371	41.1	0.000000000021	CTSK; cathepsin K [EC:3.4.22.38]	N/A
PHROG	UHGV-0176656_21	phrog_16701	51.1	0.000000000000016	peptidase	other
UniRef90	UHGV-0176656_21	UniRef90_A0A352NP54	116.0	1.24e-26	Pept_C1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176656_21	1121423.JONT01000003_gene1013	68.9	0.0000000000284	N/A	N/A
Pfam	UHGV-0176656_21	PF00112	N/A	N/A	Papain family cysteine protease	Peptidase_C1
Pfam	UHGV-0176656_21	PF07833	N/A	N/A	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
COG	UHGV-0176656_21	COG4632	N/A	N/A	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	N/A
structural_annotation	UHGV-0176656_21	PF00112,PF07833,COG4870	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_22	phrog_1863	61.0	1.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0176656_22	748224.HMPREF9436_01412	90.1	6.91e-23	N/A	N/A
PHROG	UHGV-0176656_23	phrog_297	55.8	8.9e-16	holin	lysis
UniRef90	UHGV-0176656_23	UniRef90_UPI0018971F5F	110.0	9.97e-30	phage holin	N/A
eggNOG-mapper	UHGV-0176656_23	97138.C820_02010	99.8	2.11e-26	Bacteriophage holin	N/A
Pfam	UHGV-0176656_23	PF04531	N/A	N/A	Bacteriophage holin	Phage_holin_1
NCBIFam	UHGV-0176656_23	TIGR01598.1	N/A	N/A	phage holin	N/A
COG	UHGV-0176656_23	COG5546	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0176656_23	COG5546	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_25	phrog_156	86.1	5.7e-27	portal protein	head and packaging
eggNOG-mapper	UHGV-0176656_25	1408437.JNJN01000002_gene1395	309.0	0	N/A	N/A
structural_annotation	UHGV-0176656_25	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_27	phrog_422	138.4	5.19994e-41	major head protein	head and packaging
UniRef90	UHGV-0176656_27	UniRef90_A0A0M2NHR5	368.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0176656_27	1408437.JNJN01000001_gene1710	305.0	0	N/A	N/A
Pfam	UHGV-0176656_27	PF13287	N/A	N/A	Fn3 associated	Fn3_assoc
structural_annotation	UHGV-0176656_27	PF19821,PF13287,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0176656_28	1226322.HMPREF1545_00787	94.7	4.6e-16	N/A	N/A
Pfam	UHGV-0176656_28	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
structural_annotation	UHGV-0176656_29	PF11650	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_30	phrog_3287	131.9	5.3e-39	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0176656_30	1232449.BAHV02000016_gene1816	433.0	0	N/A	N/A
structural_annotation	UHGV-0176656_30	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
KOfam	UHGV-0176656_32	K06237	94.1	1.5e-28	COL4A; collagen type IV alpha	N/A
PHROG	UHGV-0176656_32	phrog_819	127.6	0	tail protein	tail
UniRef90	UHGV-0176656_32	UniRef90_UPI001F4CFECE	141.0	4.06e-32	collagen-like protein	N/A
eggNOG-mapper	UHGV-0176656_32	1408422.JHYF01000026_gene3527	63.9	0.00000000311	nuclear chromosome segregation	N/A
Pfam	UHGV-0176656_32	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0176656_32	COG5301	N/A	N/A	Phage-related tail fiber protein	N/A
KOfam	UHGV-0176656_35	K19304	114.4	1.3e-33	mepM; murein DD-endopeptidase [EC:3.4.24.-]	N/A
PHROG	UHGV-0176656_35	phrog_7767	92.6	2.9e-27	metallo-endopeptidase	other
UniRef90	UHGV-0176656_35	UniRef90_A0A2V2EQ01	227.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0176656_35	67267.JNXT01000027_gene1316	93.2	1.35e-20	Peptidase family M23	N/A
Pfam	UHGV-0176656_35	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
COG	UHGV-0176656_35	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0176656_35	PF01551,MF_00664,NF040883,COG0739	N/A	N/A	N/A	N/A
Pfam	UHGV-0176656_36	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
structural_annotation	UHGV-0176656_38	PF18573,NF033147	N/A	N/A	N/A	N/A
KOfam	UHGV-0176656_41	K14059	216.1	0	int; integrase	N/A
PHROG	UHGV-0176656_41	phrog_1	189.4	0	integrase	integration and excision
UniRef90	UHGV-0176656_41	UniRef90_UPI0019610FE2	246.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0176656_41	742738.HMPREF9460_01344	206.0	0	Phage integrase family	N/A
Pfam	UHGV-0176656_41	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0176656_41	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0176656_41	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_44	phrog_8	44.0	0.000000000005	transcriptional regulator	transcription regulation
UniRef90	UHGV-0176656_44	UniRef90_A0A4S2H5B3	94.0	4.29e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176656_44	1226322.HMPREF1545_00085	75.5	1.54e-16	sequence-specific DNA binding	N/A
COG	UHGV-0176656_44	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0176656_44	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0176656_45	K07729	68.7	1.3e-19	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0176656_45	phrog_3	52.3	0.000000000000028	transcriptional repressor	transcription regulation
UniRef90	UHGV-0176656_45	UniRef90_A0A4S2A9B1	69.3	0.0000000000000405	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0176656_45	97138.C820_00785	63.2	0.00000000000145	Helix-turn-helix XRE-family like proteins	N/A
PADLOC	UHGV-0176656_45	retron_type_VI_hth_cluster2_1	46.3	0.0000000000013	N/A	Retron
Pfam	UHGV-0176656_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0176656_45	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-0176656_46	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0176656_47	K01449	77.1	3.4e-22	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0176656_47	phrog_938	66.4	1.5e-19	endolysin	lysis
UniRef90	UHGV-0176656_47	UniRef90_R6DPB3	92.8	1.55e-20	Putative Cell wall hydrolase	N/A
eggNOG-mapper	UHGV-0176656_47	1274524.BSONL12_12176	68.2	0.0000000000092	COG3773 Cell wall hydrolyses involved in spore germination	N/A
Pfam	UHGV-0176656_47	PF07486	N/A	N/A	Cell Wall Hydrolase	Hydrolase_2
COG	UHGV-0176656_47	COG3773	N/A	N/A	Cell wall hydrolase CwlJ, involved in spore germination	N/A
structural_annotation	UHGV-0176656_47	PF07486,TIGR02869,COG3773	N/A	N/A	N/A	N/A
PHROG	UHGV-0176656_52	phrog_5070	99.3	3.5e-29	N/A	unknown function
UniRef90	UHGV-0176656_52	UniRef90_A0A373IMM1	70.1	0.0000000000000131	Polymer-forming cytoskeletal protein (Fragment)	N/A
eggNOG-mapper	UHGV-0176656_52	1094560.ME9_01001	85.1	4.24e-20	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-0176656_52	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0176656	Yes	36,412	47	100	1
UHGV-0192605	No	36,370	47	100	1