vOTU vOTU-004914

vOTU: vOTU-004914

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-004914
Number of genomes	19
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00060 → vGENUS-00089 → vSUBGEN-06930 → vOTU-004914
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0217159
Biosample ID	N/A
Genome length (bp)	41,874 bps
CheckV completeness	100.00% (Complete)
CDS count	54
CDS density	92.88%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170 → CAG-170 sp000432135	Total connections	160	Host agreement	81.25
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-170	Total connections	27	Host agreement	92.59

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0217159_1	phrog_13256	58.1	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0217159_1	428125.CLOLEP_01907	64.3	0.000000000000472	N/A	N/A
UniRef90	UHGV-0217159_2	UniRef90_UPI00164EA432	220.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0217159_2	525254.HMPREF0072_1273	216.0	0	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	N/A
COG	UHGV-0217159_2	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0217159_2	NF033743	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_5	phrog_16490	54.6	0.0000000000000023	N/A	unknown function
eggNOG-mapper	UHGV-0217159_5	641112.ACOK01000103_gene525	54.3	0.00000208	N/A	N/A
structural_annotation	UHGV-0217159_6	PF18573,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217159_7	UniRef90_A0A8F0WD75	77.0	0.0000000000000149	RNA polymerase sigma factor/Ubiquitin-like protein	N/A
eggNOG-mapper	UHGV-0217159_7	1378168.N510_03079	71.6	0.00000000000075	N/A	N/A
KOfam	UHGV-0217159_8	K06400	247.2	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0217159_8	phrog_95	264.3	0	integrase	integration and excision
UniRef90	UHGV-0217159_8	UniRef90_G9YSD9	412.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0217159_8	1121344.JHZO01000001_gene439	404.0	0	resolvase	N/A
Pfam	UHGV-0217159_8	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0217159_8	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0217159_8	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0217159_8	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0217159_8	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0217159_9	K22299	48.0	0.00000000000026	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
Pfam	UHGV-0217159_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0217159_9	COG1813	N/A	N/A	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	N/A
structural_annotation	UHGV-0217159_9	PF13560,MF_00535,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_11	phrog_5783	280.6	0	N/A	unknown function
UniRef90	UHGV-0217159_11	UniRef90_A0A1C7FL48	337.0	0	Nuclease	N/A
eggNOG-mapper	UHGV-0217159_11	445971.ANASTE_00686	261.0	0	NYN domain	N/A
Pfam	UHGV-0217159_11	PF01936	N/A	N/A	NYN domain	NYN
COG	UHGV-0217159_11	COG1432	N/A	N/A	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	N/A
structural_annotation	UHGV-0217159_11	PF01936,MF_04140,TIGR00288,COG1432	N/A	N/A	N/A	N/A
KOfam	UHGV-0217159_13	K22300	58.5	1.6e-16	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0217159_13	phrog_8	54.8	0.0000000000000023	transcriptional regulator	transcription regulation
UniRef90	UHGV-0217159_13	UniRef90_E2ZIF0	123.0	1.37e-33	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-0217159_13	748224.HMPREF9436_01444	123.0	2.29e-34	N/A	N/A
PADLOC	UHGV-0217159_13	retron_type_VI_hth_cluster2_1	46.5	0.00000000000055	N/A	Retron
Pfam	UHGV-0217159_13	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0217159_13	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0217159_13	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0217159_14	UniRef90_A0A8D9PDN2	68.6	0.0000000000000527	DNA-binding protein	N/A
Pfam	UHGV-0217159_14	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0217159_14	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0217159_17	PF10548	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0217159_19	NF041247	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0217159_20	PF05082	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_24	phrog_3136	129.4	1.4e-38	N/A	unknown function
UniRef90	UHGV-0217159_24	UniRef90_UPI001C26B029	114.0	3.52e-28	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0217159_24	693746.OBV_25380	58.5	0.0000000789	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0217159_24	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0217159_24	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_25	phrog_38832	74.4	1.2e-21	N/A	unknown function
eggNOG-mapper	UHGV-0217159_25	665956.HMPREF1032_00143	67.0	0.00000000000791	N/A	N/A
PHROG	UHGV-0217159_26	phrog_2118	99.9	3.1e-29	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217159_26	UniRef90_A0A417HX51	198.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0217159_26	1511.CLOST_1546	114.0	2.96e-31	HNH endonuclease	N/A
Pfam	UHGV-0217159_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0217159_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0217159_26	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_30	phrog_190	101.4	8.9e-30	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0217159_30	UniRef90_UPI0006C2AC63	125.0	9.98e-34	N/A	N/A
eggNOG-mapper	UHGV-0217159_30	1226322.HMPREF1545_00295	115.0	2.15e-30	N/A	N/A
Pfam	UHGV-0217159_30	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0217159_30	PF06356	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_32	phrog_374	53.7	0.0000000000000041	HNH endonuclease	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0217159_32	1423807.BACO01000037_gene1103	66.6	0.00000000000647	N/A	N/A
PHROG	UHGV-0217159_33	phrog_2245	88.7	6.1e-26	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0217159_33	UniRef90_A0A4U9RLZ8	68.9	0.00000000000276	N/A	N/A
eggNOG-mapper	UHGV-0217159_33	428125.CLOLEP_01814	67.4	0.00000000000541	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0217159_33	PF08271	N/A	N/A	N/A	N/A
KOfam	UHGV-0217159_34	K00571	97.0	2.1e-28	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0217159_34	phrog_23224	184.5	0	DNA methyltransferase	other
UniRef90	UHGV-0217159_34	UniRef90_UPI001D0839DE	353.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0217159_34	718252.FP2_06750	353.0	0	DNA methylase	N/A
PADLOC	UHGV-0217159_34	MTase_II_00172	90.0	6.2e-28	Type II methyltransferase	RM
Pfam	UHGV-0217159_34	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0217159_34	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0217159_34	PF01555,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_35	phrog_3584	111.2	8.1e-33	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0217159_35	537013.CLOSTMETH_02141	70.1	0.00000000000651	N/A	N/A
structural_annotation	UHGV-0217159_35	PF21578,MF_00360	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_36	phrog_606	65.8	6.8e-19	terminase small subunit	head and packaging
UniRef90	UHGV-0217159_36	UniRef90_UPI001F487344	125.0	5.56e-34	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0217159_36	397290.C810_05185	125.0	2.27e-34	DNA-packaging protein gp3	N/A
Pfam	UHGV-0217159_36	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-0217159_36	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0217159_37	K06909	152.2	4.2039e-45	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0217159_37	phrog_979	138.3	2.79979e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0217159_37	UniRef90_A0A810Q5R0	649.0	0	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0217159_37	1410650.JHWL01000003_gene2834	617.0	0	N/A	N/A
Pfam	UHGV-0217159_37	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0217159_37	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0217159_37	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_38	phrog_511	233.9	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0217159_38	1410650.JHWL01000003_gene2827	320.0	0	N/A	N/A
structural_annotation	UHGV-0217159_38	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0217159_39	537007.BLAHAN_05255	61.2	0.00000032	N/A	N/A
PHROG	UHGV-0217159_40	phrog_37329	51.8	0.0000000000000096	N/A	unknown function
Pfam	UHGV-0217159_40	PF00041	N/A	N/A	Fibronectin type III domain	fn3
COG	UHGV-0217159_40	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
structural_annotation	UHGV-0217159_40	PF17744,PF16655,MF_01905,NF038116,COG3979,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_42	phrog_156	300.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0217159_42	1410650.JHWL01000003_gene2833	535.0	0	N/A	N/A
structural_annotation	UHGV-0217159_42	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_43	phrog_13908	148.2	5.04467e-44	N/A	unknown function
eggNOG-mapper	UHGV-0217159_43	1410650.JHWL01000003_gene2831	105.0	9.67e-24	N/A	N/A
PHROG	UHGV-0217159_44	phrog_1357	217.5	0	major head protein	head and packaging
UniRef90	UHGV-0217159_44	UniRef90_A0A2V2CFL5	398.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0217159_44	1410650.JHWL01000003_gene2830	275.0	0	N/A	N/A
Pfam	UHGV-0217159_44	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0217159_44	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0217159_44	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0217159_46	phrog_12105	121.4	4.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-0217159_46	1226322.HMPREF1545_03850	59.3	0.00000000158	N/A	N/A
UniRef90	UHGV-0217159_47	UniRef90_R5DCX9	189.0	0	PG_binding_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0217159_47	1410650.JHWL01000003_gene2815	137.0	7.36e-34	N/A	N/A
PHROG	UHGV-0217159_48	phrog_22978	127.9	2.00386e-43	N/A	unknown function
eggNOG-mapper	UHGV-0217159_48	1408437.JNJN01000039_gene389	485.0	0	heme binding	N/A
Pfam	UHGV-0217159_48	PF18760	N/A	N/A	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
COG	UHGV-0217159_48	COG0739	N/A	N/A	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	N/A
structural_annotation	UHGV-0217159_49	PF18962,NF011773	N/A	N/A	N/A	N/A
KOfam	UHGV-0217159_50	K16628	178.8	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-0217159_50	phrog_819	135.2	0	tail protein	tail
eggNOG-mapper	UHGV-0217159_50	1232443.BAIA02000078_gene14	84.3	0.0000000000000358	nuclear chromosome segregation	N/A
Pfam	UHGV-0217159_50	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-0217159_50	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
PHROG	UHGV-0217159_51	phrog_37900	53.1	4.4e-17	N/A	unknown function
UniRef90	UHGV-0217159_51	UniRef90_R5IRZ6	263.0	0	N/A	N/A
eggNOG-mapper	UHGV-0217159_51	1519439.JPJG01000060_gene1894	187.0	0	N/A	N/A
Pfam	UHGV-0217159_51	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0217159_51	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0217159_51	PF19789,PF13620,NF033708	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0217159_52	1519439.JPJG01000060_gene1895	48.9	0.00000562	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0217159	Yes	41,874	59	100	1
UHGV-1366378	No	41,077	59	100	1
UHGV-1366379	No	41,077	59	100	1
UHGV-1383705	No	41,056	59	98	1
UHGV-0044366	No	40,847	59	98	1
UHGV-1468592	No	40,847	59	98	1
UHGV-0058783	No	32,304	59	77	1
UHGV-1419646	No	24,229	60	58	1
UHGV-1726839	No	17,524	60	42	1
UHGV-2229165	No	17,407	60	42	1
UHGV-1807757	No	16,088	61	38	1
UHGV-1727760	No	14,754	60	35	1
UHGV-1649741	No	14,127	60	34	1
UHGV-1665174	No	14,114	60	34	1
UHGV-1660917	No	14,112	61	34	1
UHGV-1777091	No	13,939	60	33	1
UHGV-1739076	No	13,424	61	32	1
UHGV-1703336	No	12,940	60	31	1
UHGV-1745317	No	10,638	61	25	1