vOTU vOTU-005018

vOTU: vOTU-005018

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005018
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00373 → vGENUS-00237 → vSUBGEN-00275 → vOTU-005018
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0183069
Biosample ID	SAMN09781772
Genome length (bp)	45,736 bps
CheckV completeness	100.00% (Complete)
CDS count	76
CDS density	92.85%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → SFJ001	Total connections	70	Host agreement	94.29
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0183069_1	phrog_4433	66.9	3.1e-19	N/A	unknown function
eggNOG-mapper	UHGV-0183069_1	645991.Sgly_0315	59.3	0.0000000213	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0183069_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0183069_1	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_5	phrog_24490	40.5	0.000000000043	N/A	unknown function
PHROG	UHGV-0183069_8	phrog_253	115.2	5.3e-34	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183069_8	UniRef90_E2ZNS5	150.0	8.40779e-44	Siphovirus Gp157	N/A
eggNOG-mapper	UHGV-0183069_8	748224.HMPREF9436_03356	150.0	1.4013e-44	Siphovirus Gp157	N/A
Pfam	UHGV-0183069_8	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
structural_annotation	UHGV-0183069_8	PF05565	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_9	phrog_7838	136.1	2.9e-40	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183069_9	UniRef90_A0A8D9UGW3	225.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0183069_9	742767.HMPREF9456_02052	180.0	0	N/A	N/A
structural_annotation	UHGV-0183069_9	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_10	phrog_72	59.1	5.2e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183069_10	UniRef90_UPI000C7BF263	171.0	0	recombination protein NinB	N/A
eggNOG-mapper	UHGV-0183069_10	445972.ANACOL_01825	142.0	4.96004e-41	N/A	N/A
structural_annotation	UHGV-0183069_10	PF05772	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_11	phrog_7566	82.2	4.2e-24	N/A	unknown function
UniRef90	UHGV-0183069_11	UniRef90_A0A8D9UHC0	80.1	2.12e-17	Recombination enhancement function protein nuclease	N/A
eggNOG-mapper	UHGV-0183069_11	693746.OBV_25470	90.1	7.28e-22	N/A	N/A
KOfam	UHGV-0183069_12	K03111	116.7	3.3e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0183069_12	phrog_44	121.5	6.7e-36	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183069_12	UniRef90_R6I6X7	132.0	7.51e-37	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0183069_12	445972.ANACOL_01827	125.0	4.98e-35	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0183069_12	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0183069_12	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0183069_12	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0183069_12	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0183069_12	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_13	phrog_270	110.0	3e-32	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183069_13	UniRef90_UPI000497F8A6	144.0	1.91e-39	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0183069_13	1232446.BAIE02000002_gene816	144.0	3.20001e-40	N/A	N/A
structural_annotation	UHGV-0183069_13	PF05584,MF_01819,TIGR01610,COG3355	N/A	N/A	N/A	N/A
KOfam	UHGV-0183069_14	K02314	228.9	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0183069_14	phrog_19	218.5	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183069_14	UniRef90_UPI001F1C052D	440.0	0	replicative DNA helicase	N/A
eggNOG-mapper	UHGV-0183069_14	1203606.HMPREF1526_01325	166.0	4.48416e-44	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0183069_14	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0183069_14	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0183069_14	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0183069_14	PF03796,PF00772,MF_04155,NF005240,COG0305	N/A	N/A	N/A	N/A
KOfam	UHGV-0183069_15	K01160	42.7	0.000000000014	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0183069_15	phrog_1682	67.3	2.3e-19	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183069_15	UniRef90_UPI0009406B47	97.8	6.73e-24	endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0183069_15	220668.lp_2433	93.6	5.21e-23	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	N/A
COG	UHGV-0183069_15	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0183069_15	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_16	phrog_236	80.7	3.2e-23	nucleotide kinase	other
UniRef90	UHGV-0183069_16	UniRef90_UPI000D110E3A	97.1	5.87e-24	N/A	N/A
eggNOG-mapper	UHGV-0183069_16	247490.KSU1_C1079	59.3	0.000000000399	N/A	N/A
Pfam	UHGV-0183069_16	PF11753	N/A	N/A	N/A	DUF3310
structural_annotation	UHGV-0183069_16	PF11753	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_18	phrog_757	50.1	0.000000000000043	DNA methyltransferase	other
UniRef90	UHGV-0183069_18	UniRef90_A0A7J2R6L5	67.4	0.0000000000000879	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0183069_18	748224.HMPREF9436_03069	100.0	7.74e-26	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0183069_18	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0183069_19	phrog_757	124.1	9e-37	DNA methyltransferase	other
UniRef90	UHGV-0183069_19	UniRef90_UPI001C00B13F	306.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0183069_19	748224.HMPREF9436_03069	217.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0183069_19	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
PHROG	UHGV-0183069_20	phrog_1233	54.3	0.0000000000000027	N/A	unknown function
UniRef90	UHGV-0183069_20	UniRef90_A0A116RB38	57.0	0.0000000166	N/A	N/A
eggNOG-mapper	UHGV-0183069_20	764299.STRIC_2132	51.6	0.000000335	N/A	N/A
Pfam	UHGV-0183069_20	PF10263	N/A	N/A	SprT-like family	SprT-like
structural_annotation	UHGV-0183069_20	PF06114	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_25	phrog_6721	291.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0183069_25	478749.BRYFOR_08540	268.0	0	N/A	N/A
structural_annotation	UHGV-0183069_25	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_26	phrog_599	47.7	0.00000000000034	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0183069_26	UniRef90_N9XC48	72.0	0.00000000000000259	Lar family restriction alleviation protein	N/A
Pfam	UHGV-0183069_26	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0183069_26	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0183069_26	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0183069_26	PF14354,NF007260	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_28	phrog_36	75.2	1.1e-21	transcriptional regulator	transcription regulation
Pfam	UHGV-0183069_28	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0183069_28	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0183069_28	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_29	phrog_5070	132.1	2.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-0183069_29	929794.CALV01000014_gene27	97.4	1.32e-20	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	N/A
COG	UHGV-0183069_29	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0183069_29	MF_01691,NF040481	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183069_30	1235798.C817_04600	64.3	0.00000000000625	N/A	N/A
structural_annotation	UHGV-0183069_30	PF13560,NF040522	N/A	N/A	N/A	N/A
UniRef90	UHGV-0183069_33	UniRef90_W1I3U4	139.0	2.34003e-41	Uncultured bacterium extrachromosomal DNA RGI00970	N/A
eggNOG-mapper	UHGV-0183069_35	1163671.JAGI01000002_gene1246	90.5	4.8e-21	N/A	N/A
structural_annotation	UHGV-0183069_39	PF03869	N/A	N/A	N/A	N/A
KOfam	UHGV-0183069_42	K21523	48.1	0.000000000000059	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0183069_42	phrog_2	101.3	1.5e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0183069_42	UniRef90_UPI001F401ABC	661.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0183069_42	316274.Haur_1384	148.0	2.13e-36	N/A	N/A
Pfam	UHGV-0183069_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0183069_42	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0183069_42	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_43	phrog_3287	175.6	0	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0183069_43	665956.HMPREF1032_03917	669.0	0	N/A	N/A
structural_annotation	UHGV-0183069_43	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_46	phrog_35275	59.5	2.3e-17	N/A	unknown function
eggNOG-mapper	UHGV-0183069_46	1226322.HMPREF1545_03846	70.9	0.0000000000282	N/A	N/A
PHROG	UHGV-0183069_47	phrog_24113	56.0	5.9e-16	N/A	unknown function
eggNOG-mapper	UHGV-0183069_47	1226322.HMPREF1545_03847	53.5	0.000000315	N/A	N/A
structural_annotation	UHGV-0183069_47	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_48	phrog_371	139.6	1.40004e-41	major head protein	head and packaging
UniRef90	UHGV-0183069_48	UniRef90_A0A1Y4TDW7	474.0	0	Mu-like_gpT domain-containing protein	N/A
eggNOG-mapper	UHGV-0183069_48	1226322.HMPREF1545_03848	285.0	0	N/A	N/A
Pfam	UHGV-0183069_48	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0183069_48	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_49	phrog_156	232.3	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0183069_49	693746.OBV_23930	460.0	0	N/A	N/A
structural_annotation	UHGV-0183069_49	PF12236,MF_04120,TIGR01542,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_50	phrog_13046	46.6	0.00000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0183069_50	693746.OBV_23880	104.0	4.07e-25	N/A	N/A
structural_annotation	UHGV-0183069_50	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183069_51	665956.HMPREF1032_03918	118.0	1.68e-27	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0183069_52	phrog_15594	83.4	2e-24	N/A	unknown function
eggNOG-mapper	UHGV-0183069_52	1118055.CAGU01000013_gene763	65.9	0.00000000000115	N/A	N/A
structural_annotation	UHGV-0183069_52	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_53	phrog_31538	55.2	0.0000000000000014	N/A	unknown function
eggNOG-mapper	UHGV-0183069_53	665950.HMPREF1025_01991	49.7	0.00000732	N/A	N/A
PHROG	UHGV-0183069_54	phrog_13589	205.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0183069_54	411460.RUMTOR_01324	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183069_55	290402.Cbei_3386	62.0	0.0000000359	N/A	N/A
KOfam	UHGV-0183069_57	K07273	205.9	0	acm; lysozyme	N/A
PHROG	UHGV-0183069_57	phrog_291	162.7	0	endolysin	lysis
UniRef90	UHGV-0183069_57	UniRef90_UPI00164A97A0	196.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0183069_57	537013.CLOSTMETH_03464	159.0	1.9478e-43	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0183069_57	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0183069_57	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0183069_57	PF01183,PF05194,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183069_58	97138.C820_00248	60.8	0.000000000036	N/A	N/A
PHROG	UHGV-0183069_59	phrog_1129	79.2	3.3e-23	holin	lysis
UniRef90	UHGV-0183069_59	UniRef90_A0A3R5ZDU6	135.0	6.15e-40	Holin	N/A
eggNOG-mapper	UHGV-0183069_59	1256908.HMPREF0373_00463	128.0	1.16e-37	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-0183069_59	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0183069_59	PF06946	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183069_60	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183069_63	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183069_65	1506994.JNLQ01000004_gene3618	212.0	0	N/A	N/A
UniRef90	UHGV-0183069_66	UniRef90_A0A4R1R5G7	80.1	3.91e-19	Anaerobic ribonucleoside-triphosphate reductase-like protein	N/A
eggNOG-mapper	UHGV-0183069_66	658088.HMPREF0987_00997	75.5	4.46e-18	Anaerobic ribonucleoside-triphosphate reductase	N/A
Pfam	UHGV-0183069_66	PF13597	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	NRDD
COG	UHGV-0183069_66	COG1328	N/A	N/A	Anaerobic ribonucleoside-triphosphate reductase	N/A
KOfam	UHGV-0183069_67	K14059	97.1	2.8e-28	int; integrase	N/A
PHROG	UHGV-0183069_67	phrog_1	102.0	7.8e-30	integrase	integration and excision
UniRef90	UHGV-0183069_67	UniRef90_UPI001897E1C8	155.0	4.34e-40	site-specific integrase	N/A
eggNOG-mapper	UHGV-0183069_67	411471.SUBVAR_07390	101.0	1.12e-21	Phage integrase family	N/A
Pfam	UHGV-0183069_67	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0183069_67	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0183069_67	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
Pfam	UHGV-0183069_68	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183069_68	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183069_68	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183069_69	1268072.PSAB_08410	53.5	0.00000135	N/A	N/A
structural_annotation	UHGV-0183069_69	PF10358	N/A	N/A	N/A	N/A
COG	UHGV-0183069_71	COG4197	N/A	N/A	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	N/A
structural_annotation	UHGV-0183069_71	PF01381,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_72	phrog_8	46.4	0.00000000000089	transcriptional regulator	transcription regulation
UniRef90	UHGV-0183069_72	UniRef90_UPI001C009F10	112.0	3.1e-31	helix-turn-helix transcriptional regulator	N/A
Pfam	UHGV-0183069_72	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183069_72	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183069_72	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_73	phrog_463	208.8	0	anti-repressor	transcription regulation
UniRef90	UHGV-0183069_73	UniRef90_UPI00137B411D	276.0	0	ORF6C domain-containing protein	N/A
eggNOG-mapper	UHGV-0183069_73	411490.ANACAC_00813	224.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0183069_73	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0183069_73	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0183069_73	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0183069_73	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183069_74	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183069_75	596152.DesU5LDRAFT_1910	93.2	1.51e-20	N/A	N/A
structural_annotation	UHGV-0183069_75	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
PHROG	UHGV-0183069_76	phrog_4433	89.6	4.1e-26	N/A	unknown function
eggNOG-mapper	UHGV-0183069_76	645991.Sgly_0315	73.9	0.000000000000197	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0183069_76	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0183069_76	NF000318	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0183069	Yes	45,736	55	100	1
UHGV-0212971	No	45,664	55	100	1
UHGV-0180997	No	22,658	55	51	1