vOTU vOTU-005077

vOTU: vOTU-005077

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005077
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-01208 → vGENUS-01172 → vSUBGEN-01177 → vOTU-005077
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1364902
Biosample ID	SAMEA1906574
Genome length (bp)	39,928 bps
CheckV completeness	100.00% (Complete)
CDS count	50
CDS density	95.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395	Total connections	192	Host agreement	93.23
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → RUG115 → RUG115 sp900066395	Total connections	79	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1364902_1	K01448	102.3	6.3e-30	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1364902_1	phrog_435	152.3	4.2039e-45	endolysin	lysis
UniRef90	UHGV-1364902_1	UniRef90_A0A416Z2X7	495.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-1364902_1	1469948.JPNB01000001_gene537	187.0	0	hmm pf01520	N/A
Pfam	UHGV-1364902_1	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-1364902_1	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-1364902_1	PF01520,PF18342,MF_00417,TIGR02883,COG0860,COG4991	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364902_2	397290.C810_05225	75.5	2.34e-17	N/A	N/A
PHROG	UHGV-1364902_3	phrog_872	80.1	3.3e-23	N/A	unknown function
UniRef90	UHGV-1364902_3	UniRef90_UPI001BD9A19D	90.5	4.78e-21	N/A	N/A
eggNOG-mapper	UHGV-1364902_3	632245.CLP_1646	95.5	9.2e-24	Phage protein (N4 Gp49/phage Sf6 gene 66) family	N/A
dbAPIS	UHGV-1364902_3	APIS052	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_4	phrog_199	79.1	5.4e-23	holin	lysis
UniRef90	UHGV-1364902_4	UniRef90_A0A3R6Q4W7	272.0	0	Holin	N/A
eggNOG-mapper	UHGV-1364902_4	411462.DORLON_00766	198.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-1364902_4	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1364902_4	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1364902_4	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1364902_4	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_5	phrog_1980	53.8	0.000000000000003	tail fiber protein	tail
UniRef90	UHGV-1364902_5	UniRef90_A0A3R6XFV5	642.0	0	Tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1364902_5	397288.C806_00116	87.4	4.23e-16	N/A	N/A
Pfam	UHGV-1364902_5	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
PHROG	UHGV-1364902_6	phrog_3639	48.7	0.000000000000085	minor tail protein	tail
UniRef90	UHGV-1364902_6	UniRef90_A0A3R6TVQ8	438.0	0	N/A	N/A
eggNOG-mapper	UHGV-1364902_6	1160721.RBI_I01572	68.9	0.0000000000927	N/A	N/A
Pfam	UHGV-1364902_6	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-1364902_6	PF10651,NF032891,COG2372	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_7	phrog_22978	553.7	0	N/A	unknown function
UniRef90	UHGV-1364902_7	UniRef90_R5G452	741.0	0	PBECR5 domain-containing protein	N/A
eggNOG-mapper	UHGV-1364902_7	1410650.JHWL01000003_gene2814	780.0	0	N/A	N/A
Pfam	UHGV-1364902_7	PF18814	N/A	N/A	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
PHROG	UHGV-1364902_8	phrog_21397	45.1	0.0000000000013	N/A	unknown function
eggNOG-mapper	UHGV-1364902_8	1410650.JHWL01000003_gene2815	125.0	4.31e-29	N/A	N/A
PHROG	UHGV-1364902_10	phrog_511	236.6	0	internal virion protein	head and packaging
eggNOG-mapper	UHGV-1364902_10	1321782.HMPREF1986_00351	316.0	0	N/A	N/A
structural_annotation	UHGV-1364902_10	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_11	phrog_12105	133.5	8.9e-40	N/A	unknown function
eggNOG-mapper	UHGV-1364902_11	1226322.HMPREF1545_03850	71.2	0.0000000000000332	N/A	N/A
PHROG	UHGV-1364902_12	phrog_15239	51.2	0.000000000000017	N/A	unknown function
PHROG	UHGV-1364902_13	phrog_1357	266.6	0	major head protein	head and packaging
UniRef90	UHGV-1364902_13	UniRef90_A0A3R6PQZ4	627.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-1364902_13	657322.FPR_02330	393.0	0	N/A	N/A
Pfam	UHGV-1364902_13	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-1364902_13	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1364902_13	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_14	phrog_13908	227.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1364902_14	1321782.HMPREF1986_00346	78.6	0.0000000000000776	N/A	N/A
KOfam	UHGV-1364902_15	K07584	72.8	6.4e-21	N/A	N/A
PHROG	UHGV-1364902_15	phrog_4478	66.4	3.4e-19	peptidase	other
UniRef90	UHGV-1364902_15	UniRef90_A0A416Z2U9	190.0	0	Ribosomal-processing cysteine protease Prp	N/A
eggNOG-mapper	UHGV-1364902_15	1121914.AUDW01000025_gene171	55.8	0.0000000146	Cysteine protease Prp	N/A
Pfam	UHGV-1364902_15	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
COG	UHGV-1364902_15	COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_16	phrog_156	349.5	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1364902_16	748224.HMPREF9436_02547	507.0	0	N/A	N/A
structural_annotation	UHGV-1364902_16	PF16510,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1364902_17	K06909	98.4	9e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1364902_17	phrog_979	214.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-1364902_17	UniRef90_A0A2V2D4K5	995.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1364902_17	411483.FAEPRAA2165_01044	635.0	0	Terminase-like family	N/A
Pfam	UHGV-1364902_17	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1364902_17	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1364902_17	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-1364902_18	K07474	71.7	2e-20	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1364902_18	phrog_2606	144.0	1.4013e-45	terminase small subunit	head and packaging
UniRef90	UHGV-1364902_18	UniRef90_C4Z826	145.0	9.57e-39	Sigma70_r4_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1364902_18	1329250.WOSG25_061460	108.0	2.16e-25	Homeodomain-like domain	N/A
Pfam	UHGV-1364902_18	PF06056	N/A	N/A	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
Pfam	UHGV-1364902_18	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1364902_18	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1364902_18	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1364902_20	K03698	44.4	0.0000000000021	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	N/A
PHROG	UHGV-1364902_20	phrog_28876	91.3	8.6e-27	metal-dependent phosphohydrolase	other
UniRef90	UHGV-1364902_20	UniRef90_A0A843HIF4	187.0	0	HDIG domain-containing protein	N/A
eggNOG-mapper	UHGV-1364902_20	1235800.C819_00499	210.0	0	metal-dependent phosphohydrolase, HD sub domain	N/A
Pfam	UHGV-1364902_20	PF01966	N/A	N/A	HD domain	HD
COG	UHGV-1364902_20	COG3481	N/A	N/A	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	N/A
structural_annotation	UHGV-1364902_20	PF21447,MF_01427,NF010007,COG3481	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364902_22	UniRef90_UPI001D072F7E	74.7	0.000000000000219	N/A	N/A
eggNOG-mapper	UHGV-1364902_22	397290.C810_01492	54.3	0.000000852	N/A	N/A
structural_annotation	UHGV-1364902_23	PF09889,COG4068	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_25	phrog_15077	108.3	1.4e-31	N/A	unknown function
UniRef90	UHGV-1364902_25	UniRef90_A0A3A6HZA9	169.0	1.96182e-44	N/A	N/A
eggNOG-mapper	UHGV-1364902_25	1280698.AUJS01000007_gene1019	189.0	0	N/A	N/A
structural_annotation	UHGV-1364902_25	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_26	phrog_8470	213.1	0	N/A	unknown function
UniRef90	UHGV-1364902_26	UniRef90_UPI000E4BB21C	1399.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1364902_26	742733.HMPREF9469_00219	335.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1364902_26	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1364902_26	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_27	phrog_4433	87.9	1.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-1364902_27	742733.HMPREF9469_00220	152.0	1.4013e-44	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1364902_27	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-1364902_27	PF12120,NF000318	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364902_28	483218.BACPEC_01167	116.0	8.17e-31	N/A	N/A
eggNOG-mapper	UHGV-1364902_30	1117958.PE143B_0129235	49.7	0.000000986	N/A	N/A
PHROG	UHGV-1364902_33	phrog_986	74.9	9.6e-22	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364902_33	UniRef90_A0A416Z2U8	139.0	9.37048e-42	N/A	N/A
eggNOG-mapper	UHGV-1364902_33	1204534.J9QD24_9CAUD	68.6	0.0000000000000234	N/A	N/A
Pfam	UHGV-1364902_33	PF12961	N/A	N/A	N/A	DUF3850
structural_annotation	UHGV-1364902_33	PF12961,MF_00684,NF003443,COG4043	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_34	phrog_20593	52.1	0.0000000000000085	N/A	unknown function
eggNOG-mapper	UHGV-1364902_35	658655.HMPREF0988_00866	83.6	4.74e-20	N/A	N/A
PHROG	UHGV-1364902_36	phrog_24368	74.3	1.6e-21	N/A	unknown function
eggNOG-mapper	UHGV-1364902_36	411902.CLOBOL_03886	59.3	0.00000000244	N/A	N/A
PHROG	UHGV-1364902_37	phrog_7370	47.5	0.000000000000091	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1364902_37	UniRef90_UPI00164A90AD	138.0	4.93001e-40	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1364902_37	1235800.C819_02254	107.0	2.54e-28	HNH nucleases	N/A
KOfam	UHGV-1364902_38	K03469	58.1	2.2e-16	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
UniRef90	UHGV-1364902_38	UniRef90_A0A416Z2U3	292.0	0	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1364902_38	1163389.OOM_1312	69.7	0.000000000000547	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-1364902_38	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1364902_38	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1364902_38	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_39	phrog_3584	155.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1364902_39	1235800.C819_02258	271.0	0	N/A	N/A
structural_annotation	UHGV-1364902_39	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-1364902_43	phrog_6058	41.8	0.000000000014	N/A	unknown function
UniRef90	UHGV-1364902_43	UniRef90_A0A416Z3U8	132.0	5.4e-39	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-1364902_43	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-1364902_43	PF12728,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1364902_44	PF09035	N/A	N/A	N/A	N/A
KOfam	UHGV-1364902_46	K22300	53.7	0.0000000000000049	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1364902_46	phrog_2967	51.7	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1364902_46	UniRef90_UPI000E48696E	147.0	2.42425e-43	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1364902_46	1095750.HMPREF9970_1686	101.0	5.41e-26	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1364902_46	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1364902_46	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1364902_46	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-1364902_48	UniRef90_A0A3R6QMJ7	95.1	7.9e-25	XRE family transcriptional regulator	N/A
Pfam	UHGV-1364902_48	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1364902_48	COG3620	N/A	N/A	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	N/A
structural_annotation	UHGV-1364902_48	PF01381,NF041951,COG3655	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1364902_49	1163671.JAGI01000002_gene1685	67.8	0.0000000000988	Flagellar rod assembly protein muramidase FlgJ	N/A
NCBIFam	UHGV-1364902_49	NF033223.2	N/A	N/A	YHYH domain-containing protein	N/A
COG	UHGV-1364902_49	COG1705	N/A	N/A	Flagellum-specific peptidoglycan hydrolase FlgJ	N/A
KOfam	UHGV-1364902_50	K14059	184.8	0	int; integrase	N/A
PHROG	UHGV-1364902_50	phrog_1	175.4	0	integrase	integration and excision
UniRef90	UHGV-1364902_50	UniRef90_A0A318EPS8	275.0	0	Site-specific recombinase XerD	N/A
eggNOG-mapper	UHGV-1364902_50	1235799.C818_03513	184.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-1364902_50	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-1364902_50	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1364902_50	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1364902_50	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1364902	Yes	39,928	41	100	1
UHGV-0183471	No	39,907	41	100	1
UHGV-2001430	No	35,348	41	89	1
UHGV-1663471	No	10,242	40	26	1