vOTU vOTU-005213

vOTU: vOTU-005213

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005213
Number of genomes	2
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-02380 → vGENUS-21112 → vSUBGEN-41947 → vOTU-005213
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0179728
Biosample ID	N/A
Genome length (bp)	42,328 bps
CheckV completeness	100.00% (Complete)
CDS count	57
CDS density	93.90%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae	Total connections	5	Host agreement	80
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
eggNOG-mapper	UHGV-0179728_1	1384065.JAGS01000001_gene2507	61.6	0.00000000198	domain, Protein	N/A
NCBIFam	UHGV-0179728_1	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-0179728_1	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
eggNOG-mapper	UHGV-0179728_2	1519439.JPJG01000060_gene1895	117.0	8.78e-31	N/A	N/A
structural_annotation	UHGV-0179728_2	PF10618	N/A	N/A	N/A	N/A
Pfam	UHGV-0179728_3	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0179728_3	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_4	phrog_4105	50.0	0.000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0179728_4	411460.RUMTOR_01326	51.2	0.000000962	N/A	N/A
PHROG	UHGV-0179728_6	phrog_13256	61.7	8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0179728_6	1226322.HMPREF1545_02800	70.5	0.00000000000000129	N/A	N/A
KOfam	UHGV-0179728_7	K01448	60.5	3.1e-17	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0179728_7	phrog_435	105.6	4.2e-31	endolysin	lysis
UniRef90	UHGV-0179728_7	UniRef90_A0A4V3BGY9	61.2	0.000000606	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0179728_7	999413.HMPREF1094_01993	113.0	2.48e-25	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0179728_7	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
Pfam	UHGV-0179728_7	PF09992	N/A	N/A	Phosphodiester glycosidase	NAGPA
COG	UHGV-0179728_7	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0179728_7	PF01520,PF01832,NF038016,NF038140,NF041850,COG1705,COG0860,COG3807	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_8	phrog_511	123.9	1.8e-37	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0179728_8	1226322.HMPREF1545_00785	174.0	1.13505e-43	N/A	N/A
structural_annotation	UHGV-0179728_8	PF11134,NF038015,TIGR03721,COG3823	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_11	phrog_22978	1049.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0179728_11	1410650.JHWL01000003_gene2814	302.0	0	N/A	N/A
UniRef90	UHGV-0179728_12	UniRef90_UPI001C037734	92.4	1.84e-23	LuxR C-terminal-related transcriptional regulator	N/A
Pfam	UHGV-0179728_12	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-0179728_12	COG1595	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	N/A
structural_annotation	UHGV-0179728_12	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
KOfam	UHGV-0179728_16	K14059	146.6	2.90069e-43	int; integrase	N/A
PHROG	UHGV-0179728_16	phrog_1	145.6	4.1058e-43	integrase	integration and excision
UniRef90	UHGV-0179728_16	UniRef90_A0A3D2HVQ9	309.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0179728_16	1514668.JOOA01000001_gene242	166.0	1.4013e-45	Phage integrase family	N/A
Pfam	UHGV-0179728_16	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0179728_16	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0179728_16	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-0179728_21	UniRef90_UPI001967837D	63.5	0.000000000114	helix-turn-helix domain-containing protein	N/A
COG	UHGV-0179728_21	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0179728_21	PF12844,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0179728_22	K07729	53.1	0.0000000000000074	K07729; putative transcriptional regulator	N/A
PHROG	UHGV-0179728_22	phrog_3	43.7	0.000000000011	transcriptional repressor	transcription regulation
UniRef90	UHGV-0179728_22	UniRef90_A0A1C6BBE2	63.9	0.0000000000114	Transcriptional repressor DicA	N/A
eggNOG-mapper	UHGV-0179728_22	1226322.HMPREF1545_02925	56.2	0.0000000401	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0179728_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0179728_22	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
Pfam	UHGV-0179728_25	PF09943	N/A	N/A	N/A	DUF2175
PHROG	UHGV-0179728_26	phrog_1123	68.0	1e-19	N/A	unknown function
UniRef90	UHGV-0179728_26	UniRef90_A0A174T199	70.1	0.000000000000164	DNA gyrase	N/A
eggNOG-mapper	UHGV-0179728_26	411483.FAEPRAA2165_01885	73.9	8.25e-16	N/A	N/A
PHROG	UHGV-0179728_27	phrog_659	59.7	3.5e-17	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179728_27	UniRef90_A0A858BRQ4	182.0	0	N/A	N/A
eggNOG-mapper	UHGV-0179728_27	33035.JPJF01000135_gene5082	147.0	6.17973e-42	N/A	N/A
Pfam	UHGV-0179728_27	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0179728_27	PF06378,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_28	phrog_434	51.1	0.000000000000016	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179728_28	UniRef90_B0PAM4	118.0	2.91e-30	YqaJ domain-containing protein	N/A
structural_annotation	UHGV-0179728_28	PF12684,MF_03030,TIGR04328,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_29	phrog_72	60.7	2.3e-17	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179728_29	UniRef90_A0A8D9PDS2	105.0	2.51e-25	NinB protein	N/A
eggNOG-mapper	UHGV-0179728_29	445972.ANACOL_01825	118.0	3.07e-31	N/A	N/A
structural_annotation	UHGV-0179728_29	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_30	phrog_7370	46.8	0.00000000000042	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179728_30	UniRef90_A0A7C6TX57	97.8	2.29e-24	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0179728_30	1232449.BAHV02000016_gene1841	76.3	1.46e-16	HNH nucleases	N/A
Pfam	UHGV-0179728_30	PF14279	N/A	N/A	HNH endonuclease	HNH_5
KOfam	UHGV-0179728_31	K03111	142.5	4.30058e-42	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0179728_31	phrog_44	134.4	7.80001e-40	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179728_31	UniRef90_A0A3D3Y0K5	160.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0179728_31	693746.OBV_19910	158.0	0	Single-strand binding protein family	N/A
Pfam	UHGV-0179728_31	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0179728_31	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0179728_31	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0179728_31	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0179728_31	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_32	phrog_15768	70.6	2.8e-20	N/A	unknown function
eggNOG-mapper	UHGV-0179728_32	203119.Cthe_2466	56.2	0.00000201	N/A	N/A
Pfam	UHGV-0179728_32	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0179728_32	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0179728_33	K01160	48.9	0.00000000000018	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
UniRef90	UHGV-0179728_33	UniRef90_A0A1V5ZUM0	112.0	6.25e-29	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-0179728_33	469604.HMPREF0946_00819	57.8	0.00000000759	N/A	N/A
structural_annotation	UHGV-0179728_33	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_34	phrog_374	60.4	4e-22	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179728_34	UniRef90_A0A265Q747	77.0	0.0000000000000829	AP2/ERF domain-containing protein	N/A
eggNOG-mapper	UHGV-0179728_34	411467.BACCAP_02633	81.6	1.39e-16	N/A	N/A
KOfam	UHGV-0179728_35	K03465	196.7	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0179728_35	phrog_85	145.1	3.69943e-43	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0179728_35	UniRef90_A0A329UVF4	322.0	0	Thymidylate synthase (FAD)	N/A
eggNOG-mapper	UHGV-0179728_35	1121406.JAEX01000007_gene2474	260.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0179728_35	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0179728_35	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0179728_35	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
structural_annotation	UHGV-0179728_35	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_37	phrog_474	101.2	1.7e-29	phosphofructokinase	other
UniRef90	UHGV-0179728_37	UniRef90_UPI00103054B4	102.0	1.62e-26	N/A	N/A
eggNOG-mapper	UHGV-0179728_37	1095750.HMPREF9970_1026	84.3	4.03e-20	N/A	N/A
Pfam	UHGV-0179728_37	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-0179728_37	PF19905	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_38	phrog_757	49.0	0.000000000000094	DNA methyltransferase	other
UniRef90	UHGV-0179728_38	UniRef90_A0A7J2R6L5	70.5	0.00000000000000529	DNA cytosine methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-0179728_38	748224.HMPREF9436_03069	102.0	2.75e-26	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0179728_38	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
UniRef90	UHGV-0179728_42	UniRef90_A0A8D9PDT5	51.2	0.00000745	Hydrogenase/urease nickel incorporation protein	N/A
UniRef90	UHGV-0179728_45	UniRef90_A0A1Q9JGI6	130.0	2.59e-36	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0179728_45	1118055.CAGU01000028_gene99	100.0	2.88e-25	N/A	N/A
structural_annotation	UHGV-0179728_45	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0179728_47	693746.OBV_25230	83.6	1.25e-18	N/A	N/A
structural_annotation	UHGV-0179728_47	PF06530,TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-0179728_49	K06909	136.3	2.69999e-40	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0179728_49	phrog_979	137.9	6.99949e-42	terminase large subunit	head and packaging
UniRef90	UHGV-0179728_49	UniRef90_R5AXD9	572.0	0	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0179728_49	1410650.JHWL01000003_gene2834	514.0	0	N/A	N/A
Pfam	UHGV-0179728_49	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
COG	UHGV-0179728_49	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0179728_49	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_50	phrog_156	319.7	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0179728_50	1410650.JHWL01000003_gene2833	516.0	0	N/A	N/A
structural_annotation	UHGV-0179728_50	PF16510,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
Pfam	UHGV-0179728_51	PF04327	N/A	N/A	Cysteine protease Prp	Peptidase_Prp
structural_annotation	UHGV-0179728_51	PF04327,NF011122,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_52	phrog_13908	263.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0179728_52	1410650.JHWL01000003_gene2831	181.0	0	N/A	N/A
PHROG	UHGV-0179728_53	phrog_1357	283.9	0	major head protein	head and packaging
UniRef90	UHGV-0179728_53	UniRef90_A0A2V2GQW4	404.0	0	N4-gp56 family major capsid protein	N/A
eggNOG-mapper	UHGV-0179728_53	748224.HMPREF9436_02545	367.0	0	N/A	N/A
Pfam	UHGV-0179728_53	PF13252	N/A	N/A	N/A	DUF4043
NCBIFam	UHGV-0179728_53	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-0179728_53	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0179728_54	phrog_15239	46.7	0.0000000000005	N/A	unknown function
PHROG	UHGV-0179728_55	phrog_12105	65.3	9.6e-19	N/A	unknown function
eggNOG-mapper	UHGV-0179728_57	1384065.JAGS01000001_gene2507	60.5	0.000000554	domain, Protein	N/A
Pfam	UHGV-0179728_57	PF13306	N/A	N/A	BspA type Leucine rich repeat region (6 copies)	LRR_5
NCBIFam	UHGV-0179728_57	TIGR02167.1	N/A	N/A	bacterial surface protein 26-residue repeat	N/A
COG	UHGV-0179728_57	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0179728	Yes	42,328	56	100	1
UHGV-0199008	No	42,328	56	100	1