vOTU vOTU-005333

vOTU: vOTU-005333

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005333
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00172 → vGENUS-00704 → vSUBGEN-12230 → vOTU-005333
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1368382
Biosample ID	N/A
Genome length (bp)	44,167 bps
CheckV completeness	100.00% (Complete)
CDS count	72
CDS density	89.65%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	284	Host agreement	99.65
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	2	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1368382_1	phrog_13879	82.9	5.6e-30	N/A	unknown function
eggNOG-mapper	UHGV-1368382_1	411902.CLOBOL_00124	212.0	0	N/A	N/A
PHROG	UHGV-1368382_2	phrog_1194	63.3	3.3e-18	N/A	unknown function
eggNOG-mapper	UHGV-1368382_2	411902.CLOBOL_00125	129.0	5.86e-37	N/A	N/A
structural_annotation	UHGV-1368382_2	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_3	phrog_37543	712.0	0	N/A	unknown function
UniRef90	UHGV-1368382_3	UniRef90_A0A1C6CG40	280.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1368382_3	411459.RUMOBE_01384	226.0	0	phage tail tape measure protein	N/A
COG	UHGV-1368382_3	COG5412	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1368382_3	PF11177,PF09486,TIGR02559,COG3237,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_4	phrog_706	136.5	1.50001e-40	N/A	unknown function
UniRef90	UHGV-1368382_4	UniRef90_A0A1I0K8S4	204.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1368382_4	33035.JPJF01000106_gene3124	180.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1368382_4	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1368382_4	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_5	phrog_11299	98.6	5.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-1368382_5	411459.RUMOBE_01382	100.0	2.7e-25	N/A	N/A
structural_annotation	UHGV-1368382_5	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_6	phrog_3099	103.5	2e-30	N/A	unknown function
eggNOG-mapper	UHGV-1368382_6	476272.RUMHYD_01782	159.0	0	N/A	N/A
PHROG	UHGV-1368382_7	phrog_3266	91.2	8.2e-27	tail completion	connector
eggNOG-mapper	UHGV-1368382_7	476272.RUMHYD_01781	141.0	1.91e-40	N/A	N/A
structural_annotation	UHGV-1368382_7	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_8	phrog_556	71.4	3.7e-21	minor head protein	head and packaging
UniRef90	UHGV-1368382_8	UniRef90_UPI0008B4CFF0	201.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1368382_8	476272.RUMHYD_01780	173.0	0	N/A	N/A
Pfam	UHGV-1368382_8	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1368382_8	PF11114	N/A	N/A	N/A	N/A
COG	UHGV-1368382_9	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
PHROG	UHGV-1368382_10	phrog_3366	91.4	8.8e-27	N/A	unknown function
eggNOG-mapper	UHGV-1368382_10	476272.RUMHYD_01779	154.0	0	N/A	N/A
structural_annotation	UHGV-1368382_10	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_11	phrog_8680	233.8	0	N/A	unknown function
UniRef90	UHGV-1368382_11	UniRef90_UPI001C0F342A	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-1368382_11	411470.RUMGNA_02208	254.0	0	N/A	N/A
Pfam	UHGV-1368382_11	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-1368382_11	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_12	phrog_18218	140.4	4.19969e-42	N/A	unknown function
UniRef90	UHGV-1368382_12	UniRef90_A0A8D9PGR5	152.0	1.4013e-45	Holin	N/A
eggNOG-mapper	UHGV-1368382_12	411902.CLOBOL_03424	79.7	7.2e-18	N/A	N/A
structural_annotation	UHGV-1368382_12	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_13	phrog_419	100.2	2.3e-29	N/A	unknown function
UniRef90	UHGV-1368382_13	UniRef90_A0A4U9RIR3	120.0	1.35e-33	N/A	N/A
eggNOG-mapper	UHGV-1368382_13	476272.RUMHYD_03324	123.0	1.18e-35	N/A	N/A
structural_annotation	UHGV-1368382_13	PF14083	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_14	phrog_541	94.5	7.5e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-1368382_14	476272.RUMHYD_01778	117.0	4.02e-31	N/A	N/A
PHROG	UHGV-1368382_15	phrog_544	157.2	0	major head protein	head and packaging
UniRef90	UHGV-1368382_15	UniRef90_A0A395X7A1	594.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1368382_15	1232453.BAIF02000011_gene3359	381.0	0	N/A	N/A
Pfam	UHGV-1368382_15	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-1368382_15	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_16	phrog_194	69.4	6.8e-20	head scaffolding protein	head and packaging
UniRef90	UHGV-1368382_16	UniRef90_UPI001D14C9C8	184.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1368382_16	476272.RUMHYD_01775	181.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1368382_16	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1368382_16	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_18	phrog_28802	234.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1368382_18	476272.RUMHYD_01772	201.0	0	N/A	N/A
PHROG	UHGV-1368382_19	phrog_20016	192.7	0	N/A	unknown function
UniRef90	UHGV-1368382_19	UniRef90_A0A285PT46	156.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1368382_19	397290.C810_05214	176.0	0	N/A	N/A
structural_annotation	UHGV-1368382_19	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_20	phrog_16490	181.1	0	N/A	unknown function
eggNOG-mapper	UHGV-1368382_20	397290.C810_01328	175.0	0	N/A	N/A
PHROG	UHGV-1368382_21	phrog_22984	87.0	4.8e-26	N/A	unknown function
PHROG	UHGV-1368382_22	phrog_21718	133.2	1.3e-39	N/A	unknown function
eggNOG-mapper	UHGV-1368382_22	397290.C810_05210	131.0	1.16e-36	N/A	N/A
PHROG	UHGV-1368382_23	phrog_4105	112.3	1.9e-33	N/A	unknown function
eggNOG-mapper	UHGV-1368382_23	657322.FPR_27220	101.0	2.59e-26	N/A	N/A
PHROG	UHGV-1368382_24	phrog_3754	120.5	9.7e-36	N/A	unknown function
eggNOG-mapper	UHGV-1368382_24	476272.RUMHYD_01764	179.0	0	N/A	N/A
PHROG	UHGV-1368382_25	phrog_581	209.1	0	minor head protein	head and packaging
UniRef90	UHGV-1368382_25	UniRef90_A0A1C6CDG2	454.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1368382_25	33035.JPJF01000106_gene3134	363.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1368382_25	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1368382_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1368382_25	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_27	phrog_14030	157.1	0	N/A	unknown function
UniRef90	UHGV-1368382_27	UniRef90_UPI001F3A7341	276.0	0	SH3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1368382_27	411468.CLOSCI_01513	231.0	0	N/A	N/A
Pfam	UHGV-1368382_27	PF19127	N/A	N/A	Choline-binding repeat	Choline_bind_3
structural_annotation	UHGV-1368382_27	PF19127	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_28	phrog_533	288.3	0	portal protein	head and packaging
UniRef90	UHGV-1368382_28	UniRef90_A0A1C6CDM8	684.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1368382_28	33035.JPJF01000106_gene3135	506.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-1368382_28	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-1368382_29	K06909	425.1	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1368382_29	phrog_3717	167.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-1368382_29	UniRef90_A0A1C6CDG5	840.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1368382_29	33035.JPJF01000106_gene3136	717.0	0	Terminase small subunit	N/A
Pfam	UHGV-1368382_29	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
Pfam	UHGV-1368382_29	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1368382_29	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1368382_29	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1368382_29	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1368382_29	PF04466,PF17288,PF03592,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_30	phrog_33130	92.3	2.4e-27	N/A	unknown function
UniRef90	UHGV-1368382_30	UniRef90_A0A3B9CD52	79.0	1.79e-17	S1-like domain-containing protein	N/A
structural_annotation	UHGV-1368382_30	PF10922,MF_00839	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_32	phrog_9298	340.2	0	radical SAM domain protein	other
UniRef90	UHGV-1368382_32	UniRef90_A0A6L6XJP0	550.0	0	Radical SAM protein	N/A
eggNOG-mapper	UHGV-1368382_32	1235793.C809_02647	434.0	0	N/A	N/A
COG	UHGV-1368382_32	COG1032	N/A	N/A	Radical SAM superfamily enzyme YgiQ, UPF0313 family	N/A
structural_annotation	UHGV-1368382_32	MF_01864,NF010916,COG2516	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_35	phrog_419	50.2	0.000000000000054	N/A	unknown function
UniRef90	UHGV-1368382_35	UniRef90_A0A0V8CZM6	85.5	3.14e-20	Phage-associated protein	N/A
eggNOG-mapper	UHGV-1368382_35	476272.RUMHYD_03324	90.9	4e-23	N/A	N/A
PHROG	UHGV-1368382_36	phrog_13621	64.1	2.1e-18	N/A	unknown function
UniRef90	UHGV-1368382_36	UniRef90_A0A3D5LBK9	94.7	3.58e-24	DNA methyltransferase (Fragment)	N/A
eggNOG-mapper	UHGV-1368382_36	1235800.C819_02255	102.0	1.48e-24	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-1368382_36	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
AcrCatalog	UHGV-1368382_37	cluster_11670	50.4	0.000000000057	NA	N/A
PHROG	UHGV-1368382_39	phrog_774	65.5	9e-19	N/A	unknown function
eggNOG-mapper	UHGV-1368382_39	397290.C810_05225	125.0	4.48e-35	N/A	N/A
PHROG	UHGV-1368382_40	phrog_4572	97.9	6.2e-29	N/A	unknown function
eggNOG-mapper	UHGV-1368382_40	411902.CLOBOL_05688	111.0	4.88e-30	N/A	N/A
structural_annotation	UHGV-1368382_42	PF18350,MF_00754,NF003018	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_43	phrog_15768	90.6	7.4e-34	N/A	unknown function
UniRef90	UHGV-1368382_43	UniRef90_R6RVQ1	188.0	0	Chromosome segregation ATPases	N/A
eggNOG-mapper	UHGV-1368382_43	1095750.HMPREF9970_1674	69.7	0.000000000022	N/A	N/A
Pfam	UHGV-1368382_43	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-1368382_43	PF19808	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_44	phrog_244	69.7	5.6e-20	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1368382_44	742740.HMPREF9474_03491	181.0	0	N/A	N/A
structural_annotation	UHGV-1368382_44	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_45	phrog_2113	58.1	1.2e-16	N/A	unknown function
eggNOG-mapper	UHGV-1368382_45	1160721.RBI_II00485	53.5	0.000000121	N/A	N/A
structural_annotation	UHGV-1368382_45	PF21715,TIGR04176,COG1654	N/A	N/A	N/A	N/A
KOfam	UHGV-1368382_46	K06915	42.9	5.2e-26	herA; DNA double-strand break repair helicase HerA and related ATPase	N/A
PHROG	UHGV-1368382_46	phrog_7035	303.6	0	N/A	unknown function
UniRef90	UHGV-1368382_46	UniRef90_A0A3R6JG85	943.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1368382_46	411459.RUMOBE_01032	669.0	0	N/A	N/A
PADLOC	UHGV-1368382_46	HerA_00002	164.2	0	NA	GAO_19 \| GAO_20
Pfam	UHGV-1368382_46	PF01935	N/A	N/A	Helicase HerA, central domain	DUF87
COG	UHGV-1368382_46	COG0433	N/A	N/A	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	N/A
structural_annotation	UHGV-1368382_46	PF12846,PF09378,MF_01347,NF040937,COG0433	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_47	phrog_1227	216.2	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1368382_47	UniRef90_A0A3R6LVN7	469.0	0	N/A	N/A
eggNOG-mapper	UHGV-1368382_47	411461.DORFOR_00019	365.0	0	N/A	N/A
Pfam	UHGV-1368382_47	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1368382_47	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1368382_47	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_48	phrog_3657	357.2	0	N/A	unknown function
UniRef90	UHGV-1368382_48	UniRef90_UPI001DC4E782	343.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1368382_48	411461.DORFOR_00020	369.0	0	N/A	N/A
eggNOG-mapper	UHGV-1368382_49	1304866.K413DRAFT_3014	46.6	0.00000242	N/A	N/A
PHROG	UHGV-1368382_58	phrog_3240	95.0	5.9e-28	N/A	unknown function
eggNOG-mapper	UHGV-1368382_58	1158607.UAU_01711	101.0	2.21e-27	N/A	N/A
PHROG	UHGV-1368382_59	phrog_8	54.4	0.000000000000003	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368382_59	UniRef90_A0A5M9HYA8	98.6	6.99e-26	Helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1368382_59	1304866.K413DRAFT_3003	75.1	1.61e-16	addiction module antidote protein HigA	N/A
Pfam	UHGV-1368382_59	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1368382_59	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1368382_59	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-1368382_60	K22300	48.8	0.00000000000015	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1368382_60	phrog_8	63.2	5.4e-18	transcriptional regulator	transcription regulation
UniRef90	UHGV-1368382_60	UniRef90_A0A0E2HFR2	137.0	2.45e-39	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1368382_60	411460.RUMTOR_02056	118.0	1.84e-32	Bacteriophage CI repressor helix-turn-helix domain	N/A
Pfam	UHGV-1368382_60	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1368382_60	COG3093	N/A	N/A	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	N/A
structural_annotation	UHGV-1368382_60	PF12844,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_61	phrog_87	64.3	1.4e-18	metallo-protease	other
UniRef90	UHGV-1368382_61	UniRef90_A0A173TZ87	138.0	2.2e-39	Metallopeptidase immA	N/A
eggNOG-mapper	UHGV-1368382_61	476272.RUMHYD_01733	112.0	1.02e-29	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1368382_61	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1368382_61	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1368382_61	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1368382_62	phrog_6148	53.3	0.0000000000000023	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1368382_62	UniRef90_UPI0013F64234	117.0	3.87e-29	N/A	N/A
eggNOG-mapper	UHGV-1368382_62	1449050.JNLE01000005_gene4075	64.7	0.0000000000785	N/A	N/A
structural_annotation	UHGV-1368382_62	PF12978,PF20794,MF_00925,NF008423,COG4687,COG2913	N/A	N/A	N/A	N/A
KOfam	UHGV-1368382_65	K14059	152.7	4.2039e-45	int; integrase	N/A
PHROG	UHGV-1368382_65	phrog_1	153.1	2.8026e-45	integrase	integration and excision
UniRef90	UHGV-1368382_65	UniRef90_A0A396QHT0	431.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-1368382_65	1304866.K413DRAFT_1180	386.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1368382_65	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1368382_65	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1368382_65	PF00589,PF12167,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368382_68	1298920.KI911353_gene541	70.1	0.0000000000238	ATPase involved in DNA repair	N/A
COG	UHGV-1368382_68	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
structural_annotation	UHGV-1368382_68	PF03425,NF033675	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1368382_69	1298920.KI911353_gene541	72.0	0.000000000000133	ATPase involved in DNA repair	N/A
COG	UHGV-1368382_69	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
eggNOG-mapper	UHGV-1368382_70	411902.CLOBOL_00122	142.0	2.04996e-41	N/A	N/A
PHROG	UHGV-1368382_71	phrog_18725	62.8	6.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-1368382_71	411902.CLOBOL_00123	122.0	9.72e-34	N/A	N/A
PHROG	UHGV-1368382_72	phrog_32744	132.4	3.1e-39	N/A	unknown function
eggNOG-mapper	UHGV-1368382_72	411902.CLOBOL_00124	239.0	0	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1368382	Yes	44,167	45	100	1
UHGV-0209408	No	44,167	45	100	1