vOTU vOTU-005380

vOTU: vOTU-005380

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005380
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00062 → vSUBFAM-00170 → vGENUS-00088 → vSUBGEN-39581 → vOTU-005380
Host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0181046
Biosample ID	N/A
Genome length (bp)	44,008 bps
CheckV completeness	100.00% (Complete)
CDS count	69
CDS density	87.60%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella	Total connections	292	Host agreement	98.29
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → Erysipelotrichales → Erysipelotrichaceae → Holdemanella → Holdemanella porci	Total connections	58	Host agreement	77.59

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0181046_2	phrog_24451	89.8	2.3e-26	N/A	unknown function
eggNOG-mapper	UHGV-0181046_2	908340.HMPREF9406_2565	87.4	7.97e-21	N/A	N/A
UniRef90	UHGV-0181046_7	UniRef90_A0A8F0WFQ8	70.1	0.0000000000748	Outer capsid protein/viral fiber	N/A
eggNOG-mapper	UHGV-0181046_7	476272.RUMHYD_01770	112.0	3.53e-28	N/A	N/A
PHROG	UHGV-0181046_8	phrog_20016	68.4	7.7e-20	N/A	unknown function
UniRef90	UHGV-0181046_8	UniRef90_A0A395WF88	268.0	0	BclA_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0181046_8	1226322.HMPREF1545_00077	59.7	0.00000000227	N/A	N/A
Pfam	UHGV-0181046_8	PF18573	N/A	N/A	BclA C-terminal domain	BclA_C
structural_annotation	UHGV-0181046_8	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_10	phrog_443	52.6	0.000000000000013	holin	lysis
UniRef90	UHGV-0181046_10	UniRef90_A0A2U2ELA1	77.8	1.92e-17	Membrane protein	N/A
eggNOG-mapper	UHGV-0181046_10	476272.RUMHYD_01759	84.7	7.99e-21	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0181046_10	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0181046_10	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0181046_12	K01447	60.7	2.9e-17	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0181046_12	phrog_7698	155.2	0	endolysin	lysis
UniRef90	UHGV-0181046_12	UniRef90_UPI001D0AA402	549.0	0	N-acetylmuramoyl-L-alanine amidase	N/A
eggNOG-mapper	UHGV-0181046_12	1125712.HMPREF1316_2631	145.0	2.41e-40	N-Acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0181046_12	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
COG	UHGV-0181046_12	COG3023	N/A	N/A	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	N/A
structural_annotation	UHGV-0181046_12	COG5632	N/A	N/A	N/A	N/A
KOfam	UHGV-0181046_13	K14059	198.5	0	int; integrase	N/A
PHROG	UHGV-0181046_13	phrog_1	177.6	0	integrase	integration and excision
UniRef90	UHGV-0181046_13	UniRef90_A0A395WBW7	740.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0181046_13	1235796.C815_00955	300.0	0	DNA integration	N/A
Pfam	UHGV-0181046_13	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0181046_13	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0181046_13	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_15	phrog_3996	112.2	2.7e-33	membrane protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0181046_15	UniRef90_A0A413UEK4	263.0	0	N/A	N/A
eggNOG-mapper	UHGV-0181046_15	936573.HMPREF1147_0268	84.0	1.14e-18	N/A	N/A
Pfam	UHGV-0181046_15	PF10097	N/A	N/A	N/A	DUF2335
COG	UHGV-0181046_15	COG5346	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181046_15	PF10097,COG5346	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_16	phrog_4980	119.0	1.9e-35	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0181046_16	UniRef90_UPI001E5F056E	94.4	4.3e-18	Ltp family lipoprotein	N/A
eggNOG-mapper	UHGV-0181046_16	658086.HMPREF0994_06731	81.3	0.0000000000000174	Host cell surface-exposed lipoprotein	N/A
Pfam	UHGV-0181046_16	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-0181046_16	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-0181046_16	PF18933,PF02631,MF_02248,MF_01114,NF008627,NF001062,COG5435,COG2137	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_17	UniRef90_A0A4R1RC20	114.0	1.26e-28	Putative heavy-metal-binding protein	N/A
eggNOG-mapper	UHGV-0181046_17	517418.Ctha_1419	112.0	1.62e-26	Putative heavy-metal-binding	N/A
Pfam	UHGV-0181046_17	PF01906	N/A	N/A	Putative heavy-metal-binding	YbjQ_1
COG	UHGV-0181046_17	COG0393	N/A	N/A	N/A	N/A
KOfam	UHGV-0181046_18	K18830	60.2	3.1e-17	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0181046_18	phrog_8	45.7	0.00000000000079	transcriptional regulator	transcription regulation
UniRef90	UHGV-0181046_18	UniRef90_A0A395WA05	257.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0181046_18	999413.HMPREF1094_02045	96.7	6.31e-24	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0181046_18	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0181046_18	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0181046_18	PF01381,MF_00535,NF007257,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_20	UniRef90_UPI000E4DF961	79.7	1.24e-18	ribbon-helix-helix domain-containing protein	N/A
Pfam	UHGV-0181046_20	PF01402	N/A	N/A	Ribbon-helix-helix protein, copG family	RHH_1
structural_annotation	UHGV-0181046_20	PF01402,NF041793,COG4710	N/A	N/A	N/A	N/A
KOfam	UHGV-0181046_24	K04763	133.8	1.9e-39	xerD; integrase/recombinase XerD	N/A
PHROG	UHGV-0181046_24	phrog_1	115.6	5.5e-34	integrase	integration and excision
UniRef90	UHGV-0181046_24	UniRef90_A0A395W9T7	580.0	0	Site-specific integrase	N/A
eggNOG-mapper	UHGV-0181046_24	908340.HMPREF9406_2589	226.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0181046_24	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0181046_24	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0181046_24	PF00589,PF13495,MF_02055,NF040815,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_26	phrog_428	140.6	1.29998e-41	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181046_26	UniRef90_A0A395WBX6	408.0	0	Phg_2220_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0181046_26	279808.SH2379	149.0	2.95996e-41	Conserved phage C-terminus (Phg_2220_C)	N/A
Pfam	UHGV-0181046_26	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0181046_26	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0181046_26	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0181046_26	PF09524,PF08679,MF_01909,TIGR02220,NF040939,COG1675	N/A	N/A	N/A	N/A
KOfam	UHGV-0181046_27	K02315	120.9	1.4e-35	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0181046_27	phrog_50	108.4	7.6e-32	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181046_27	UniRef90_A0A395WER8	532.0	0	Bac_DnaA domain-containing protein	N/A
eggNOG-mapper	UHGV-0181046_27	1232446.BAIE02000011_gene1611	133.0	6.28e-35	N/A	N/A
Pfam	UHGV-0181046_27	PF00308	N/A	N/A	Bacterial dnaA protein	Bac_DnaA
COG	UHGV-0181046_27	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0181046_27	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_28	UniRef90_R6T064	80.1	0.00000000000000557	NUMOD4 domain-containing protein	N/A
structural_annotation	UHGV-0181046_28	PF13392,PF07453	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181046_34	PF17399	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_35	UniRef90_A0A395WBY6	124.0	1.55e-33	N/A	N/A
structural_annotation	UHGV-0181046_38	PF11061	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_41	UniRef90_A0A413UEX6	288.0	0	N/A	N/A
Pfam	UHGV-0181046_41	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0181046_41	PF07374,NF008895	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181046_43	PF10879	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_44	phrog_2316	40.8	0.000000000038	N/A	unknown function
UniRef90	UHGV-0181046_44	UniRef90_A0A3E4YBW5	124.0	2.99e-35	N/A	N/A
eggNOG-mapper	UHGV-0181046_44	1280676.AUJO01000024_gene3262	65.5	0.00000000000106	N/A	N/A
structural_annotation	UHGV-0181046_44	PF16475,MF_00436,NF033216	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_45	UniRef90_A0A374RI78	925.0	0	Tnp_DDE_dom domain-containing protein	N/A
eggNOG-mapper	UHGV-0181046_45	1235802.C823_05780	316.0	0	Transposase	N/A
Pfam	UHGV-0181046_45	PF05598	N/A	N/A	N/A	DUF772
Pfam	UHGV-0181046_45	PF13751	N/A	N/A	Transposase DDE domain	DDE_Tnp_1_6
COG	UHGV-0181046_45	COG3039	N/A	N/A	Transposase and inactivated derivatives, IS5 family	N/A
structural_annotation	UHGV-0181046_45	PF13701,NF033551,COG5421	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_49	phrog_119	58.0	1.6e-16	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0181046_49	UniRef90_A0A395WA48	263.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0181046_49	1211814.CAPG01000074_gene3460	65.9	0.00000000000269	HNH endonuclease	N/A
Pfam	UHGV-0181046_49	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0181046_49	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0181046_50	phrog_361	74.5	1.2e-21	terminase small subunit	head and packaging
UniRef90	UHGV-0181046_50	UniRef90_A0A1C6H6I9	80.1	6.43e-17	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0181046_50	1329516.JPST01000017_gene431	50.1	0.00000474	Phage terminase, small subunit	N/A
Pfam	UHGV-0181046_50	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0181046_50	COG3747	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0181046_50	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_51	phrog_9	308.6	0	terminase large subunit	head and packaging
UniRef90	UHGV-0181046_51	UniRef90_A0A395WD03	1122.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0181046_51	742740.HMPREF9474_04307	547.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0181046_51	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0181046_51	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0181046_51	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0181046_51	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_52	phrog_12	106.3	2.3e-31	portal protein	head and packaging
UniRef90	UHGV-0181046_52	UniRef90_A0A395W9X2	824.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0181046_52	1203606.HMPREF1526_01337	293.0	0	Portal protein	N/A
Pfam	UHGV-0181046_52	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0181046_52	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0181046_52	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0181046_53	K06904	88.2	1.1e-25	N/A	N/A
PHROG	UHGV-0181046_53	phrog_80	117.5	1.8e-34	head maturation protease	head and packaging
UniRef90	UHGV-0181046_53	UniRef90_A0A413UET6	352.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0181046_53	411470.RUMGNA_02064	174.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0181046_53	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0181046_53	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0181046_53	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0181046_53	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_54	phrog_10	79.4	5.2e-23	major head protein	head and packaging
UniRef90	UHGV-0181046_54	UniRef90_A0A395WF70	799.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0181046_54	1536774.H70357_10630	166.0	4.76441e-44	Phage capsid family	N/A
Pfam	UHGV-0181046_54	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0181046_54	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0181046_54	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0181046_54	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_55	phrog_5223	51.9	0.00000000000001	neck protein	connector
UniRef90	UHGV-0181046_55	UniRef90_A0A374RXD1	83.2	7.66e-19	DNA-packaging protein	N/A
structural_annotation	UHGV-0181046_55	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_56	phrog_1951	71.8	6.5e-21	head-tail adaptor	connector
UniRef90	UHGV-0181046_56	UniRef90_A0A395WC07	224.0	0	Head-tail adaptor protein	N/A
eggNOG-mapper	UHGV-0181046_56	1243664.CAVL020000054_gene3020	60.1	0.000000000276	head-tail adaptor	N/A
NCBIFam	UHGV-0181046_56	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0181046_56	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0181046_56	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_57	UniRef90_C3DN78	52.0	0.00000291	Prophage pi2 protein 38	N/A
structural_annotation	UHGV-0181046_57	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0181046_58	UniRef90_A0A374RUJ8	139.0	1.17e-39	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0181046_58	86416.Clopa_0344	57.4	0.0000000126	N/A	N/A
structural_annotation	UHGV-0181046_58	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_59	phrog_88	139.5	1.79997e-41	major tail protein	tail
UniRef90	UHGV-0181046_59	UniRef90_A0A395WA58	323.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-0181046_59	1111134.HMPREF1253_0377	140.0	2.3e-39	Phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0181046_59	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0181046_59	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181046_60	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0181046_62	K20282	71.1	2.3e-21	GCC2; GRIP and coiled-coil domain-containing protein 2	N/A
PHROG	UHGV-0181046_62	phrog_13339	344.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0181046_62	UniRef90_A0A395WD11	970.0	0	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0181046_62	1117379.BABA_17397	245.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0181046_62	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0181046_62	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0181046_62	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0181046_62	PF10145,TIGR01760,TIGR02971,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_63	phrog_33	49.6	0.000000000000091	distal tail protein Dit	tail
UniRef90	UHGV-0181046_63	UniRef90_A0A1C6JHE5	62.4	0.0000000561	Phage-related protein	N/A
Pfam	UHGV-0181046_63	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
NCBIFam	UHGV-0181046_63	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-0181046_63	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0181046_63	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0181046_64	phrog_1067	47.5	8.4e-24	minor head protein	head and packaging
eggNOG-mapper	UHGV-0181046_64	1232446.BAIE02000002_gene836	60.5	0.000000982	Phage minor structural protein	N/A
Pfam	UHGV-0181046_64	PF14200	N/A	N/A	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
NCBIFam	UHGV-0181046_64	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0181046_64	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0181046_64	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181046_65	537007.BLAHAN_05252	55.8	0.00000116	N/A	N/A
structural_annotation	UHGV-0181046_65	PF10651,COG5513	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181046_66	PF05895,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0181046_67	PF16407,TIGR02657,COG3794	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0181046_68	1232452.BAIB02000007_gene1610	68.6	0.000000000175	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0181046	Yes	44,008	33	100	1
UHGV-0192474	No	43,959	33	100	1
UHGV-1667744	No	14,129	34	31	1
UHGV-1660960	No	14,052	34	31	1
UHGV-1709405	No	13,096	35	29	1
UHGV-1752238	No	10,881	35	24	1