vOTU vOTU-005554

vOTU: vOTU-005554

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005554
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00605 → vGENUS-00605 → vSUBGEN-01909 → vOTU-005554
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1375760
Biosample ID	SAMEA2338745
Genome length (bp)	42,782 bps
CheckV completeness	100.00% (Complete)
CDS count	65
CDS density	92.98%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Anaerotignaceae → Metalachnospira → Metalachnospira sp900553995	Total connections	5	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1375760_2	phrog_10714	43.6	0.0000000000015	N/A	unknown function
PHROG	UHGV-1375760_4	phrog_21026	51.1	0.000000000000024	N/A	unknown function
PHROG	UHGV-1375760_5	phrog_6721	235.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1375760_5	411473.RUMCAL_00916	215.0	0	N/A	N/A
structural_annotation	UHGV-1375760_5	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_6	phrog_2245	65.9	7e-19	nucleoside triphosphate pyrophosphohydrolase	other
eggNOG-mapper	UHGV-1375760_6	658655.HMPREF0988_00885	53.1	0.0000000882	N/A	N/A
PHROG	UHGV-1375760_7	phrog_474	100.5	2.7e-29	phosphofructokinase	other
UniRef90	UHGV-1375760_7	UniRef90_A0A2V2EHL9	106.0	4.94e-28	N/A	N/A
eggNOG-mapper	UHGV-1375760_7	1203606.HMPREF1526_00237	90.1	3.46e-22	N/A	N/A
Pfam	UHGV-1375760_7	PF19905	N/A	N/A	N/A	DUF6378
structural_annotation	UHGV-1375760_7	PF19905	N/A	N/A	N/A	N/A
UniRef90	UHGV-1375760_8	UniRef90_K1SN71	48.1	0.00000783	HTH_30 domain-containing protein	N/A
COG	UHGV-1375760_8	COG3835	N/A	N/A	Sugar diacid utilization regulator CdaR	N/A
structural_annotation	UHGV-1375760_8	PF13556,TIGR00637,COG2771	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_9	phrog_36	60.8	2.9e-17	transcriptional regulator	transcription regulation
Pfam	UHGV-1375760_9	PF04545	N/A	N/A	Sigma-70, region 4	Sigma70_r4
COG	UHGV-1375760_9	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-1375760_9	PF07374,MF_00674,NF008895,COG1342	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375760_11	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_12	phrog_15863	169.9	0	N/A	unknown function
UniRef90	UHGV-1375760_12	UniRef90_A0A417HVZ9	160.0	0	J domain-containing protein	N/A
eggNOG-mapper	UHGV-1375760_12	693746.OBV_01780	154.0	1.4013e-45	DnaJ molecular chaperone homology domain	N/A
COG	UHGV-1375760_12	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
structural_annotation	UHGV-1375760_15	PF03869,NF010256	N/A	N/A	N/A	N/A
KOfam	UHGV-1375760_16	K07474	97.2	3.4e-28	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1375760_16	phrog_51	106.0	3.6e-31	terminase small subunit	head and packaging
UniRef90	UHGV-1375760_16	UniRef90_UPI00045EAA25	104.0	2.71e-25	terminase small subunit	N/A
eggNOG-mapper	UHGV-1375760_16	1298920.KI911353_gene4857	104.0	5.47e-26	Terminase small subunit	N/A
Pfam	UHGV-1375760_16	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1375760_16	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1375760_16	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1375760_17	K21523	54.1	7e-28	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-1375760_17	phrog_2	94.9	1.1e-27	terminase large subunit	head and packaging
UniRef90	UHGV-1375760_17	UniRef90_R5AHR8	602.0	0	Putative terminase large subunit	N/A
eggNOG-mapper	UHGV-1375760_17	693746.OBV_23980	511.0	0	phage Terminase large subunit	N/A
COG	UHGV-1375760_17	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-1375760_17	PF03237,PF17289,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_18	phrog_156	242.2	0	portal protein	head and packaging
eggNOG-mapper	UHGV-1375760_18	693746.OBV_23930	493.0	0	N/A	N/A
structural_annotation	UHGV-1375760_18	PF16510,MF_04120,TIGR01542,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_20	phrog_35275	42.0	0.0000000000046	N/A	unknown function
eggNOG-mapper	UHGV-1375760_20	1226322.HMPREF1545_03846	58.5	0.000000659	N/A	N/A
PHROG	UHGV-1375760_21	phrog_24113	54.2	0.0000000000000019	N/A	unknown function
structural_annotation	UHGV-1375760_21	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_22	phrog_371	136.4	1.50001e-40	major head protein	head and packaging
UniRef90	UHGV-1375760_22	UniRef90_UPI001C11985C	492.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-1375760_22	1226322.HMPREF1545_03848	284.0	0	N/A	N/A
Pfam	UHGV-1375760_22	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-1375760_22	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_23	phrog_13046	52.9	0.0000000000000047	N/A	unknown function
eggNOG-mapper	UHGV-1375760_23	693746.OBV_23880	126.0	1.92e-33	N/A	N/A
structural_annotation	UHGV-1375760_23	PF20387	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375760_24	665956.HMPREF1032_03917	514.0	0	N/A	N/A
structural_annotation	UHGV-1375760_24	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_25	phrog_32680	40.5	8.9e-23	tail fiber protein	tail
eggNOG-mapper	UHGV-1375760_28	537013.CLOSTMETH_03776	84.3	0.0000000000000149	N/A	N/A
eggNOG-mapper	UHGV-1375760_29	476272.RUMHYD_00002	96.3	1.2e-19	N/A	N/A
PHROG	UHGV-1375760_30	phrog_1863	75.3	4.2e-22	N/A	unknown function
eggNOG-mapper	UHGV-1375760_30	748224.HMPREF9436_00408	108.0	2.63e-30	N/A	N/A
PHROG	UHGV-1375760_31	phrog_1129	66.9	2.2e-19	holin	lysis
UniRef90	UHGV-1375760_31	UniRef90_UPI001C1096AE	142.0	2.10055e-42	phage holin family protein	N/A
eggNOG-mapper	UHGV-1375760_31	702450.CUW_0551	106.0	5.01e-29	Phage holin family Hol44, in holin superfamily V	N/A
Pfam	UHGV-1375760_31	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-1375760_31	PF06946	N/A	N/A	N/A	N/A
KOfam	UHGV-1375760_32	K17733	114.7	8.2e-34	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1375760_32	phrog_6523	130.8	1.2e-38	endolysin	lysis
UniRef90	UHGV-1375760_32	UniRef90_F2JNY6	168.0	0	Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin	N/A
eggNOG-mapper	UHGV-1375760_32	642492.Clole_1880	168.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1375760_32	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-1375760_32	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1375760_32	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1375760_33	PF09486,NF038305	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_34	phrog_22978	120.8	4.9e-36	N/A	unknown function
eggNOG-mapper	UHGV-1375760_34	693746.OBV_23800	123.0	6.83e-25	N/A	N/A
Pfam	UHGV-1375760_35	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
structural_annotation	UHGV-1375760_35	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375760_38	445972.ANACOL_01884	55.8	0.0000000256	N/A	N/A
KOfam	UHGV-1375760_39	K14059	157.4	0	int; integrase	N/A
PHROG	UHGV-1375760_39	phrog_1	168.3	0	integrase	integration and excision
UniRef90	UHGV-1375760_39	UniRef90_UPI001C109D33	464.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-1375760_39	1462527.CCDM010000010_gene473	303.0	0	Phage integrase family	N/A
Pfam	UHGV-1375760_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1375760_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1375760_39	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-1375760_42	K18830	72.5	8e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-1375760_42	phrog_8	56.4	1.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-1375760_42	UniRef90_UPI00156FD326	150.0	1.82169e-44	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1375760_42	445972.ANACOL_03315	124.0	6.44e-35	N/A	N/A
Pfam	UHGV-1375760_42	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1375760_42	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1375760_42	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1375760_47	411461.DORFOR_00023	60.1	0.0000000000261	N/A	N/A
structural_annotation	UHGV-1375760_48	PF12728,TIGR01764,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_49	phrog_757	176.8	0	DNA methyltransferase	other
UniRef90	UHGV-1375760_49	UniRef90_A0A417JTT5	251.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1375760_49	1095750.HMPREF9970_0173	244.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1375760_49	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1375760_49	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-1375760_50	K00390	97.6	6.4e-29	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-1375760_50	phrog_424	120.6	8e-36	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1375760_50	UniRef90_A0A6N7SPL1	362.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-1375760_50	1232452.BAIB02000007_gene1640	338.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-1375760_50	BrxP_00001	82.0	1.3e-24	BrxP	BREX
Pfam	UHGV-1375760_50	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-1375760_50	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-1375760_50	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_56	phrog_11717	167.5	0	N/A	unknown function
eggNOG-mapper	UHGV-1375760_56	508419.F8J181_9CAUD	184.0	0	N/A	N/A
structural_annotation	UHGV-1375760_56	PF06420,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_57	phrog_72	67.9	1.5e-19	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375760_57	UniRef90_UPI000C7BF263	127.0	8.88e-34	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1375760_57	445972.ANACOL_01825	114.0	1.2e-29	N/A	N/A
structural_annotation	UHGV-1375760_57	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_58	phrog_7566	88.4	4.8e-26	N/A	unknown function
eggNOG-mapper	UHGV-1375760_58	1443125.Z962_p0035	57.8	0.00000000257	endonuclease activity	N/A
COG	UHGV-1375760_58	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1375760_59	K01160	59.1	1.3e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1375760_59	phrog_140	133.2	1.4e-39	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375760_59	UniRef90_A0A136WJ13	157.0	0	Endodeoxyribonuclease RusA	N/A
eggNOG-mapper	UHGV-1375760_59	1095750.HMPREF9970_1673	113.0	2.91e-30	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1375760_59	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1375760_59	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1375760_59	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_60	phrog_16304	56.9	4.6e-16	N/A	unknown function
UniRef90	UHGV-1375760_60	UniRef90_UPI00191FEC8B	66.6	0.000000000000738	N/A	N/A
eggNOG-mapper	UHGV-1375760_60	33035.JPJF01000071_gene4467	56.6	0.0000000136	N/A	N/A
Pfam	UHGV-1375760_60	PF19808	N/A	N/A	N/A	DUF6291
PHROG	UHGV-1375760_61	phrog_10469	111.4	6.9e-33	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375760_61	UniRef90_A0A350TWM2	152.0	2.40995e-41	N/A	N/A
eggNOG-mapper	UHGV-1375760_61	97138.C820_00775	139.0	9.99e-37	DnaD domain protein	N/A
Pfam	UHGV-1375760_61	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1375760_61	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-1375760_62	phrog_9804	166.0	0	N/A	unknown function
UniRef90	UHGV-1375760_62	UniRef90_R6M669	155.0	7.00649e-45	Inhibitor_G39P domain-containing protein	N/A
eggNOG-mapper	UHGV-1375760_62	903814.ELI_3550	147.0	2.78018e-42	Loader and inhibitor of phage G40P	N/A
AcrCatalog	UHGV-1375760_62	cluster_137185	35.8	0.000103	NA	N/A
Pfam	UHGV-1375760_62	PF11417	N/A	N/A	Loader and inhibitor of phage G40P	Inhibitor_G39P
structural_annotation	UHGV-1375760_62	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-1375760_63	K03111	139.2	4.49999e-41	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1375760_63	phrog_44	133.5	1.5e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1375760_63	UniRef90_A0A2V2C1N3	215.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1375760_63	97138.C820_02339	180.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1375760_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1375760_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1375760_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1375760_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1375760_63	PF00436,MF_00984,NF005580,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1375760_65	phrog_14105	64.9	1e-18	N/A	unknown function
eggNOG-mapper	UHGV-1375760_65	573061.Clocel_3578	56.2	0.00000166	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-1375760_65	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1375760	Yes	42,782	39	100	1
UHGV-0053626	No	42,566	39	100	1
UHGV-1359079	No	42,566	39	100	1
UHGV-1496607	No	42,632	39	100	1
UHGV-1446879	No	24,539	40	58	1