vOTU vOTU-005633

vOTU: vOTU-005633

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005633
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-01501 → vGENUS-02061 → vSUBGEN-13546 → vOTU-005633
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp004555405
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0183676
Biosample ID	SAMN09781785
Genome length (bp)	42,754 bps
CheckV completeness	100.00% (Complete)
CDS count	68
CDS density	91.94%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger → Gemmiger sp004555405	Total connections	23	Host agreement	82.61
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0183676_1	phrog_7964	175.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0183676_1	411470.RUMGNA_02189	95.1	2.17e-21	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0183676_1	PF00132	N/A	N/A	Bacterial transferase hexapeptide (six repeats)	Hexapep
Pfam	UHGV-0183676_1	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0183676_1	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0183676_1	MF_01691,TIGR03532,COG2171	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_5	phrog_757	221.9	0	DNA methyltransferase	other
UniRef90	UHGV-0183676_5	UniRef90_A0A3E2U1Y9	222.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0183676_5	1235790.C805_00032	216.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0183676_5	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0183676_5	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_6	phrog_659	201.0	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183676_6	UniRef90_A0A843HUJ5	206.0	0	N/A	N/A
eggNOG-mapper	UHGV-0183676_6	1507.HMPREF0262_00431	199.0	0	N/A	N/A
Pfam	UHGV-0183676_6	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0183676_6	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_7	phrog_1389	67.8	1.3e-19	N/A	unknown function
eggNOG-mapper	UHGV-0183676_7	883156.HMPREF9282_01223	68.2	0.00000000000026	N/A	N/A
structural_annotation	UHGV-0183676_7	PF11056,TIGR04376,COG1842	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_8	phrog_59	125.5	2.5e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183676_8	UniRef90_A0A2A7R177	122.0	1.31e-31	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0183676_8	1423814.HMPREF0549_1779	113.0	2.22e-28	NUMOD4 motif	N/A
PADLOC	UHGV-0183676_8	HEase_00016	97.3	2.8e-28	homing endonuclease	RM
Pfam	UHGV-0183676_8	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0183676_8	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0183676_8	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_9	phrog_7566	96.3	1.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0183676_9	693746.OBV_24070	82.4	6.23e-19	N/A	N/A
KOfam	UHGV-0183676_11	K03111	134.1	1.6e-39	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0183676_11	phrog_44	128.1	6.8e-38	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183676_11	UniRef90_A0A2A7ALU9	145.0	7.13962e-42	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0183676_11	748224.HMPREF9436_00638	141.0	5.32998e-41	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0183676_11	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0183676_11	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0183676_11	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0183676_11	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0183676_11	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_15	phrog_1163	194.5	0	N/A	unknown function
UniRef90	UHGV-0183676_15	UniRef90_UPI000246CFAE	215.0	0	conserved phage C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0183676_15	762051.LKI_09560	202.0	0	DnaD domain protein	N/A
Pfam	UHGV-0183676_15	PF09524	N/A	N/A	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
NCBIFam	UHGV-0183676_15	TIGR02220.1	N/A	N/A	phage conserved hypothetical protein, C-terminal domain	N/A
COG	UHGV-0183676_15	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0183676_15	PF07261,PF09681,TIGR01446,TIGR01714,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0183676_16	K02315	176.8	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0183676_16	phrog_50	158.2	0	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183676_16	UniRef90_A0A3A5TME7	275.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0183676_16	428125.CLOLEP_03477	201.0	0	N/A	N/A
Pfam	UHGV-0183676_16	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-0183676_16	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-0183676_16	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-0183676_16	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0183676_19	K00390	61.5	3e-18	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0183676_19	phrog_424	140.1	1.40004e-41	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0183676_19	UniRef90_A0A7X3MFG0	269.0	0	Phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0183676_19	665956.HMPREF1032_00140	262.0	0	Phosphoadenosine phosphosulfate reductase family	N/A
PADLOC	UHGV-0183676_19	BrxP_00001	40.2	0.0000000000000097	BrxP	BREX
Pfam	UHGV-0183676_19	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0183676_19	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0183676_19	PF01507,MF_00063,NF006327,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_21	phrog_190	115.1	5.2e-34	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0183676_21	UniRef90_UPI00164AE2A5	141.0	3.86997e-41	N/A	N/A
eggNOG-mapper	UHGV-0183676_21	1236514.BAKL01000051_gene3708	107.0	1.75e-28	N/A	N/A
Pfam	UHGV-0183676_21	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-0183676_21	PF06356	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183676_23	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0183676_24	PF02888	N/A	N/A	N/A	N/A
UniRef90	UHGV-0183676_26	UniRef90_Q5YA82	93.6	1.8e-22	28	N/A
structural_annotation	UHGV-0183676_31	PF17917	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_34	phrog_15863	96.5	2.1e-28	N/A	unknown function
UniRef90	UHGV-0183676_34	UniRef90_UPI0018766E78	123.0	1.15e-32	J domain-containing protein	N/A
eggNOG-mapper	UHGV-0183676_34	558152.IQ37_05720	87.4	1.49e-19	Heat shock protein DnaJ domain protein	N/A
COG	UHGV-0183676_34	COG2214	N/A	N/A	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	N/A
KOfam	UHGV-0183676_36	K06909	42.3	0.0000000000081	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0183676_36	phrog_2	68.7	1.2e-19	terminase large subunit	head and packaging
UniRef90	UHGV-0183676_36	UniRef90_UPI001F401ABC	487.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0183676_36	316274.Haur_0564	92.8	2.67e-17	N/A	N/A
COG	UHGV-0183676_36	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0183676_36	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_38	phrog_156	181.9	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0183676_38	693746.OBV_23930	336.0	0	N/A	N/A
structural_annotation	UHGV-0183676_38	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_40	phrog_35275	79.5	3.5e-23	N/A	unknown function
eggNOG-mapper	UHGV-0183676_40	1226322.HMPREF1545_03846	72.4	0.0000000000115	N/A	N/A
PHROG	UHGV-0183676_41	phrog_371	44.5	0.0000000000018	major head protein	head and packaging
UniRef90	UHGV-0183676_41	UniRef90_UPI00164C0E21	109.0	8.53e-24	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0183676_41	1226322.HMPREF1545_03848	122.0	2.87e-29	N/A	N/A
structural_annotation	UHGV-0183676_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183676_43	693746.OBV_23880	66.6	0.0000000000921	N/A	N/A
structural_annotation	UHGV-0183676_43	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_44	phrog_3287	91.0	5.5e-27	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0183676_44	665956.HMPREF1032_03917	587.0	0	N/A	N/A
structural_annotation	UHGV-0183676_44	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183676_45	665956.HMPREF1032_03918	58.2	0.000000227	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
KOfam	UHGV-0183676_48	K07273	213.1	0	acm; lysozyme	N/A
PHROG	UHGV-0183676_48	phrog_291	172.2	0	endolysin	lysis
UniRef90	UHGV-0183676_48	UniRef90_A0A4R1QM33	250.0	0	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-0183676_48	537013.CLOSTMETH_01756	238.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0183676_48	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0183676_48	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0183676_48	PF01183,MF_02227,NF002576,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_49	phrog_937	51.7	0.000000000000015	hemolysin	other
eggNOG-mapper	UHGV-0183676_49	1297617.JPJD01000099_gene2176	53.1	0.0000000723	N/A	N/A
PHROG	UHGV-0183676_50	phrog_1129	79.6	2.3e-23	holin	lysis
UniRef90	UHGV-0183676_50	UniRef90_A0A1G9U2I2	95.1	1.56e-23	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-0183676_50	537013.CLOSTMETH_03774	84.7	3.13e-20	N/A	N/A
Pfam	UHGV-0183676_50	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0183676_50	PF16079	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183676_52	693746.OBV_01590	148.0	1.96e-32	N/A	N/A
structural_annotation	UHGV-0183676_53	PF07638,MF_00674,TIGR02954,COG1846	N/A	N/A	N/A	N/A
KOfam	UHGV-0183676_56	K07741	203.0	0	antB; anti-repressor protein	N/A
PHROG	UHGV-0183676_56	phrog_63	172.5	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0183676_56	UniRef90_UPI001D09C776	314.0	0	phage antirepressor KilAC domain-containing protein	N/A
eggNOG-mapper	UHGV-0183676_56	386415.NT01CX_2199	293.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0183676_56	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0183676_56	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0183676_56	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0183676_56	PF03374,PF08346,TIGR02681,COG3645,COG3561	N/A	N/A	N/A	N/A
KOfam	UHGV-0183676_60	K14059	173.8	0	int; integrase	N/A
PHROG	UHGV-0183676_60	phrog_1	172.1	0	integrase	integration and excision
UniRef90	UHGV-0183676_60	UniRef90_A0A367GI93	194.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-0183676_60	1519439.JPJG01000011_gene49	114.0	1.16e-25	Phage integrase family	N/A
Pfam	UHGV-0183676_60	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0183676_60	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0183676_60	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0183676_60	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
KOfam	UHGV-0183676_61	K15773	44.0	0.0000000000043	hipB; HTH-type transcriptional regulator / antitoxin HipB	N/A
Pfam	UHGV-0183676_61	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183676_61	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183676_61	PF13560,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0183676_63	1410653.JHVC01000032_gene1036	63.2	0.00000000544	domain protein	N/A
COG	UHGV-0183676_63	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
Pfam	UHGV-0183676_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183676_64	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0183676_64	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_65	phrog_8	47.9	0.00000000000032	transcriptional regulator	transcription regulation
UniRef90	UHGV-0183676_65	UniRef90_UPI001C009F10	102.0	4.08e-27	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0183676_65	642492.Clole_1825	60.8	0.0000000000608	sequence-specific DNA binding	N/A
Pfam	UHGV-0183676_65	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0183676_65	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0183676_65	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0183676_67	K07741	135.7	7.80001e-40	antB; anti-repressor protein	N/A
PHROG	UHGV-0183676_67	phrog_130	262.8	0	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0183676_67	UniRef90_A0A252F729	337.0	0	Bro-N domain-containing protein	N/A
eggNOG-mapper	UHGV-0183676_67	1122146.AUHP01000010_gene1023	302.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0183676_67	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0183676_67	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0183676_67	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0183676_67	PF03374,PF02498,TIGR02681,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0183676_68	phrog_5070	169.4	0	N/A	unknown function
eggNOG-mapper	UHGV-0183676_68	1094556.MCY_01121	84.7	3.11e-18	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	N/A
Pfam	UHGV-0183676_68	PF18836	N/A	N/A	YdcK Beta solenoid repeat	B_solenoid_ydck
COG	UHGV-0183676_68	COG1044	N/A	N/A	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	N/A
structural_annotation	UHGV-0183676_68	NF040481	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0183676	Yes	42,754	49	100	1
UHGV-0209180	No	42,304	49	100	1
UHGV-0172033	No	41,674	49	97	1