vOTU vOTU-005788

vOTU: vOTU-005788

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005788
Number of genomes	8
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vSUBGEN-03066 → vOTU-005788
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1367321
Biosample ID	SAMN06348135
Genome length (bp)	41,055 bps
CheckV completeness	100.00% (Complete)
CDS count	74
CDS density	91.64%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	1078	Host agreement	96.75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	20	Host agreement	70

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1367321_1	K02086	61.6	1.3e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-1367321_1	phrog_186	64.4	2.5e-18	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1367321_1	718252.FP2_01000	92.8	8.85e-21	N/A	N/A
Pfam	UHGV-1367321_1	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1367321_1	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1367321_1	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1367321_2	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_5	phrog_3136	120.3	8.6e-36	N/A	unknown function
UniRef90	UHGV-1367321_5	UniRef90_A0A6N7TMC2	419.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1367321_5	1235792.C808_00630	75.1	0.0000000000000659	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
Pfam	UHGV-1367321_5	PF04266	N/A	N/A	ASCH domain	ASCH
COG	UHGV-1367321_5	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-1367321_5	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-1367321_6	K01160	58.2	2.4e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-1367321_6	phrog_34	60.9	2.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367321_6	UniRef90_A0A6N7TND6	215.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-1367321_6	875454.BAEW01000002_gene491	134.0	3.36e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-1367321_6	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-1367321_6	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-1367321_6	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_8	phrog_36	40.0	0.000000000063	transcriptional regulator	transcription regulation
UniRef90	UHGV-1367321_8	UniRef90_A0A6N7TNN9	70.5	0.00000000000231	N/A	N/A
structural_annotation	UHGV-1367321_8	PF07374	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367321_10	UniRef90_UPI0018CC2891	116.0	1.52e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1367321_10	1235790.C805_00037	110.0	7.68e-29	N/A	N/A
structural_annotation	UHGV-1367321_10	PF04218	N/A	N/A	N/A	N/A
KOfam	UHGV-1367321_11	K06909	142.4	3.99931e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1367321_11	phrog_10250	175.2	0	N/A	unknown function
UniRef90	UHGV-1367321_11	UniRef90_A0A844D8I4	843.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1367321_11	411490.ANACAC_00783	494.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1367321_11	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-1367321_11	PF17289	N/A	N/A	Terminase RNaseH-like domain	Terminase_6C
NCBIFam	UHGV-1367321_11	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1367321_11	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1367321_11	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_12	phrog_64	115.9	1.4e-34	portal protein	head and packaging
UniRef90	UHGV-1367321_12	UniRef90_A0A6N7TNT3	891.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1367321_12	642492.Clole_2764	80.5	0.000000000000229	phage portal protein, SPP1	N/A
Pfam	UHGV-1367321_12	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1367321_12	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_14	phrog_2468	80.0	1.5e-23	head morphogenesis	head and packaging
UniRef90	UHGV-1367321_14	UniRef90_A0A6N7TLR7	621.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1367321_14	1504822.CCNO01000013_gene286	111.0	3.22e-24	cell adhesion	N/A
Pfam	UHGV-1367321_14	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-1367321_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367321_14	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_16	phrog_5	50.3	0.000000000000056	tail completion or Neck1 protein	connector
UniRef90	UHGV-1367321_16	UniRef90_A0A6N7TNP6	280.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1367321_16	929506.CbC4_1219	87.4	6.7e-20	N/A	N/A
Pfam	UHGV-1367321_16	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-1367321_16	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_18	phrog_478	126.3	1.2e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1367321_18	UniRef90_A0A373Q857	167.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1367321_18	1111121.HMPREF1247_0834	96.3	7.89e-24	N/A	N/A
PHROG	UHGV-1367321_20	phrog_544	139.1	3.09995e-41	major head protein	head and packaging
UniRef90	UHGV-1367321_20	UniRef90_R0BKA1	436.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-1367321_20	476272.RUMHYD_01776	319.0	0	N/A	N/A
structural_annotation	UHGV-1367321_20	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_22	phrog_17977	41.9	0.000000000013	N/A	unknown function
UniRef90	UHGV-1367321_22	UniRef90_A0A844DHJ8	118.0	4.65e-32	Phage head closure protein	N/A
structural_annotation	UHGV-1367321_22	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367321_23	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_24	phrog_885	70.6	1.8e-20	major tail protein	tail
eggNOG-mapper	UHGV-1367321_24	1111121.HMPREF1247_0789	172.0	0	N/A	N/A
structural_annotation	UHGV-1367321_24	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_27	phrog_28775	125.0	5.2e-37	tail length tape measure protein	tail
UniRef90	UHGV-1367321_27	UniRef90_A0A6N7TLD3	1392.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-1367321_27	411470.RUMGNA_02228	128.0	7.57e-28	tape measure	N/A
Pfam	UHGV-1367321_27	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1367321_27	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1367321_27	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1367321_27	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367321_28	UniRef90_A0A417QGC1	118.0	5.75e-29	MtfA protein	N/A
eggNOG-mapper	UHGV-1367321_28	411490.ANACAC_00709	104.0	2.78e-24	phage tail	N/A
COG	UHGV-1367321_28	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1367321_28	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_29	phrog_3558	201.7	0	tail protein	tail
UniRef90	UHGV-1367321_29	UniRef90_UPI0013DF37AE	84.0	0.000000000000181	phage tail protein	N/A
eggNOG-mapper	UHGV-1367321_29	1035184.HMPREF1042_1326	84.0	0.0000000000000351	Prophage endopeptidase tail	N/A
Pfam	UHGV-1367321_29	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-1367321_29	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1367321_29	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_30	phrog_9534	44.8	0.0000000000022	head protein	head and packaging
eggNOG-mapper	UHGV-1367321_30	748224.HMPREF9436_01407	130.0	5.8e-32	COG NOG18825 non supervised orthologous group	N/A
PHROG	UHGV-1367321_32	phrog_1382	49.1	0.000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-1367321_32	411468.CLOSCI_00272	46.2	0.00000341	N/A	N/A
KOfam	UHGV-1367321_33	K07273	175.6	0	acm; lysozyme	N/A
PHROG	UHGV-1367321_33	phrog_291	147.4	9.94922e-44	endolysin	lysis
UniRef90	UHGV-1367321_33	UniRef90_E2ZES5	347.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-1367321_33	748224.HMPREF9436_00154	347.0	0	hydrolase, family 25	N/A
Pfam	UHGV-1367321_33	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1367321_33	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1367321_33	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_35	phrog_15303	115.4	2.6e-34	N/A	unknown function
Pfam	UHGV-1367321_35	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UniRef90	UHGV-1367321_36	UniRef90_UPI0018835F0C	514.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1367321_36	411483.FAEPRAA2165_00757	179.0	0	N/A	N/A
structural_annotation	UHGV-1367321_36	PF10651	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367321_38	PF07870,MF_01506	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_39	phrog_1454	48.4	0.00000000000016	N/A	unknown function
UniRef90	UHGV-1367321_39	UniRef90_A0A0D1WCB4	49.7	0.00000176	Phosphomannomutase	N/A
eggNOG-mapper	UHGV-1367321_39	742740.HMPREF9474_04325	57.4	0.000000000269	N/A	N/A
COG	UHGV-1367321_41	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-1367321_41	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_44	phrog_3754	93.2	2.5e-27	N/A	unknown function
eggNOG-mapper	UHGV-1367321_44	1235790.C805_00054	108.0	6.3e-29	N/A	N/A
PHROG	UHGV-1367321_45	phrog_21718	87.5	1.5e-25	N/A	unknown function
eggNOG-mapper	UHGV-1367321_45	397290.C810_05210	81.3	2.91e-17	N/A	N/A
PHROG	UHGV-1367321_46	phrog_22984	69.3	5.1e-20	N/A	unknown function
PHROG	UHGV-1367321_47	phrog_16490	203.2	0	N/A	unknown function
eggNOG-mapper	UHGV-1367321_47	397290.C810_01328	131.0	1.86e-33	N/A	N/A
PHROG	UHGV-1367321_48	phrog_20016	193.4	0	N/A	unknown function
UniRef90	UHGV-1367321_48	UniRef90_A0A285PT46	206.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-1367321_48	1226322.HMPREF1545_00077	176.0	0	N/A	N/A
structural_annotation	UHGV-1367321_48	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367321_49	PF12510	N/A	N/A	N/A	N/A
KOfam	UHGV-1367321_51	K14059	141.1	1.29998e-41	int; integrase	N/A
PHROG	UHGV-1367321_51	phrog_1	164.4	0	integrase	integration and excision
UniRef90	UHGV-1367321_51	UniRef90_A0A6N7TNQ4	744.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1367321_51	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1367321_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1367321_51	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1367321_51	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367321_52	UniRef90_A0A6N7TLT0	322.0	0	Helix-turn-helix domain-containing protein	N/A
PHROG	UHGV-1367321_55	phrog_888	67.8	1.1e-35	N/A	unknown function
UniRef90	UHGV-1367321_55	UniRef90_A0A6N7TMA2	456.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-1367321_55	999411.HMPREF1092_03312	80.1	0.0000000000000034	Short C-terminal domain	N/A
Pfam	UHGV-1367321_55	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-1367321_55	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-1367321_55	PF15947,PF14471	N/A	N/A	N/A	N/A
KOfam	UHGV-1367321_58	K22300	47.9	0.00000000000027	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1367321_58	phrog_2967	45.3	0.0000000000011	transcriptional regulator	transcription regulation
UniRef90	UHGV-1367321_58	UniRef90_A0A844DFR0	180.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1367321_58	748224.HMPREF9436_01444	144.0	8.11352e-43	N/A	N/A
Pfam	UHGV-1367321_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1367321_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1367321_58	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367321_60	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_61	phrog_32852	41.0	0.000000000025	N/A	unknown function
KOfam	UHGV-1367321_64	K07741	142.1	7.40026e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-1367321_64	phrog_63	120.1	2.1e-35	anti-repressor Ant	transcription regulation
UniRef90	UHGV-1367321_64	UniRef90_A0A6N7TLD1	279.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-1367321_64	641112.ACOK01000119_gene1439	247.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-1367321_64	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-1367321_64	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-1367321_64	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-1367321_64	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367321_68	PF10743,NF033787	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1367321_69	PF12270,NF040944	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_71	phrog_674	147.3	9.94922e-44	N/A	unknown function
UniRef90	UHGV-1367321_71	UniRef90_A0A3A6E846	481.0	0	N/A	N/A
eggNOG-mapper	UHGV-1367321_71	556268.OFAG_00840	87.0	5.43e-17	N/A	N/A
Pfam	UHGV-1367321_71	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1367321_71	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_72	phrog_2760	183.5	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1367321_72	UniRef90_A0A3A6EAW6	526.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-1367321_72	1235794.C811_01355	151.0	2.42999e-41	RecT family	N/A
Pfam	UHGV-1367321_72	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1367321_72	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-1367321_72	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1367321_72	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
UniRef90	UHGV-1367321_73	UniRef90_UPI001CBB85F6	112.0	4.74e-28	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1367321_73	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1367321_74	phrog_16304	41.5	0.000000000021	N/A	unknown function
eggNOG-mapper	UHGV-1367321_74	748224.HMPREF9436_03357	65.9	0.0000000000284	N/A	N/A
Pfam	UHGV-1367321_74	PF19808	N/A	N/A	N/A	DUF6291

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1367321	Yes	41,055	55	100	1
UHGV-0142500	No	40,896	55	100	1
UHGV-1369299	No	40,896	55	100	1
UHGV-0107548	No	41,872	55	99	1
UHGV-0173162	No	31,509	55	74	1
UHGV-1698149	No	19,071	56	45	1
UHGV-1597480	No	18,027	56	43	1
UHGV-1774564	No	15,731	55	37	1