vOTU vOTU-005883

vOTU: vOTU-005883

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-005883
Number of genomes	7
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium sp018380115
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-02027 → vGENUS-03569 → vSUBGEN-08890 → vOTU-005883
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium sp018380115
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0883735
Biosample ID	N/A
Genome length (bp)	43,545 bps
CheckV completeness	100.00% (Complete)
CDS count	65
CDS density	89.59%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium sp018380115	Total connections	12	Host agreement	75
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Ruthenibacterium → Ruthenibacterium sp018380115	Total connections	7	Host agreement	71.43

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0883735_2	K01160	57.9	2.9e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0883735_2	phrog_34	72.3	7.8e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0883735_2	UniRef90_UPI0006D84EB7	165.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
COG	UHGV-0883735_2	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0883735_2	PF19595,NF007305,COG4570	N/A	N/A	N/A	N/A
KOfam	UHGV-0883735_3	K02314	254.4	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0883735_3	phrog_19	252.3	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0883735_3	UniRef90_A0A0W7TNB4	529.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0883735_3	665956.HMPREF1032_02618	491.0	0	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0883735_3	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0883735_3	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0883735_3	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0883735_3	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_4	phrog_2514	82.5	5.1e-24	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0883735_4	UniRef90_UPI001EE2C20A	103.0	2.7e-24	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0883735_4	665956.HMPREF1032_02617	259.0	0	Phage replisome organizer, N-terminal domain protein	N/A
COG	UHGV-0883735_4	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0883735_4	PF10771,MF_01177,TIGR01714,COG5529	N/A	N/A	N/A	N/A
KOfam	UHGV-0883735_5	K03111	134.9	8.9e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0883735_5	phrog_44	137.8	6.50006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0883735_5	UniRef90_A0A316PHP0	205.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0883735_5	665956.HMPREF1032_00430	192.0	0	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-0883735_5	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0883735_5	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0883735_5	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0883735_5	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0883735_5	PF00436,MF_00984,NF005242,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_6	phrog_7566	88.8	3.6e-26	N/A	unknown function
UniRef90	UHGV-0883735_6	UniRef90_A0A371ATG2	51.6	0.00000348	Phosphoenolpyruvate carboxykinase	N/A
eggNOG-mapper	UHGV-0883735_6	693746.OBV_24070	119.0	3.26e-33	N/A	N/A
PHROG	UHGV-0883735_7	phrog_72	63.4	1.1e-18	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0883735_7	UniRef90_A0A8D9PDS2	117.0	1.87e-30	NinB protein	N/A
eggNOG-mapper	UHGV-0883735_7	445972.ANACOL_01825	135.0	3.32e-38	N/A	N/A
Pfam	UHGV-0883735_7	PF05772	N/A	N/A	NinB protein	NinB
structural_annotation	UHGV-0883735_7	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_8	phrog_659	191.3	0	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0883735_8	UniRef90_UPI0009E55993	281.0	0	N/A	N/A
eggNOG-mapper	UHGV-0883735_8	1507.HMPREF0262_00431	225.0	0	N/A	N/A
Pfam	UHGV-0883735_8	PF06378	N/A	N/A	N/A	DUF1071
structural_annotation	UHGV-0883735_8	PF06378,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_10	phrog_1123	52.9	0.0000000000000055	N/A	unknown function
UniRef90	UHGV-0883735_10	UniRef90_UPI00164CB55F	66.6	0.00000000000201	DNA gyrase	N/A
structural_annotation	UHGV-0883735_10	PF03551,TIGR02719,COG1695	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0883735_14	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_15	phrog_8	51.4	0.000000000000025	transcriptional regulator	transcription regulation
UniRef90	UHGV-0883735_15	UniRef90_A0A328UFC2	91.7	4.48e-23	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-0883735_15	1121344.JHZO01000003_gene989	57.0	0.00000000128	PFAM helix-turn-helix domain protein	N/A
Pfam	UHGV-0883735_15	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0883735_15	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0883735_15	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0883735_16	K22300	47.0	0.00000000000054	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0883735_16	phrog_8	73.8	3.2e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0883735_16	UniRef90_UPI001F157AA4	119.0	1.69e-32	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0883735_16	580331.Thit_1413	78.6	4.17e-17	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0883735_16	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0883735_16	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0883735_16	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_17	phrog_20886	40.7	0.000000000027	N/A	unknown function
UniRef90	UHGV-0883735_17	UniRef90_A0A357WUS8	79.0	1.26e-17	Peptidase_M78 domain-containing protein	N/A
structural_annotation	UHGV-0883735_17	PF06114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0883735_18	1487921.DP68_06980	55.5	0.00000141	N/A	N/A
KOfam	UHGV-0883735_19	K02238	237.3	0	comEC; competence protein ComEC	N/A
PHROG	UHGV-0883735_19	phrog_14556	309.8	0	N/A	unknown function
UniRef90	UHGV-0883735_19	UniRef90_UPI000A5D3AF4	543.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-0883735_19	1378168.N510_02494	283.0	0	Competence protein ComEC	N/A
Pfam	UHGV-0883735_19	PF00753	N/A	N/A	Metallo-beta-lactamase superfamily	Lactamase_B
COG	UHGV-0883735_19	COG2333	N/A	N/A	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	N/A
UniRef90	UHGV-0883735_20	UniRef90_A0A3A9F9H2	67.0	0.00000000000284	S24 family peptidase	N/A
eggNOG-mapper	UHGV-0883735_20	1231377.C426_0586	60.8	0.00000000247	Peptidase S24-like	N/A
Pfam	UHGV-0883735_20	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0883735_20	COG2932	N/A	N/A	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	N/A
KOfam	UHGV-0883735_21	K14059	94.5	1.6e-27	int; integrase	N/A
PHROG	UHGV-0883735_21	phrog_1	102.9	3.8e-30	integrase	integration and excision
UniRef90	UHGV-0883735_21	UniRef90_UPI0011AF8E34	263.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0883735_21	445972.ANACOL_01797	203.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0883735_21	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0883735_21	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0883735_21	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_22	phrog_28802	57.4	1e-16	N/A	unknown function
eggNOG-mapper	UHGV-0883735_22	476272.RUMHYD_01772	50.8	0.00000715	N/A	N/A
PHROG	UHGV-0883735_23	phrog_20016	228.0	0	N/A	unknown function
UniRef90	UHGV-0883735_23	UniRef90_A0A285PT46	185.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0883735_23	1226322.HMPREF1545_00077	240.0	0	N/A	N/A
structural_annotation	UHGV-0883735_23	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_24	phrog_16490	277.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0883735_24	1226322.HMPREF1545_00076	228.0	0	N/A	N/A
PHROG	UHGV-0883735_25	phrog_22984	108.2	3.6e-32	N/A	unknown function
PHROG	UHGV-0883735_26	phrog_21718	71.7	1.2e-20	N/A	unknown function
eggNOG-mapper	UHGV-0883735_26	476272.RUMHYD_01768	49.7	0.00000329	N/A	N/A
PHROG	UHGV-0883735_27	phrog_3754	106.6	1.9e-31	N/A	unknown function
eggNOG-mapper	UHGV-0883735_27	476272.RUMHYD_01764	172.0	0	N/A	N/A
Pfam	UHGV-0883735_28	PF00196	N/A	N/A	Bacterial regulatory proteins, luxR family	GerE
structural_annotation	UHGV-0883735_28	PF04545,MF_00245,NF001067,COG2771	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0883735_30	871968.DESME_08840	332.0	0	N/A	N/A
UniRef90	UHGV-0883735_33	UniRef90_UPI000BE456A5	77.0	1.53e-16	GNAT family acetyltransferase	N/A
eggNOG-mapper	UHGV-0883735_33	1163671.JAGI01000002_gene2691	80.9	7.77e-19	N/A	N/A
PHROG	UHGV-0883735_34	phrog_881	83.2	1.7e-24	holin	lysis
UniRef90	UHGV-0883735_34	UniRef90_UPI001D0692FC	89.4	5.33e-22	phage holin	N/A
eggNOG-mapper	UHGV-0883735_34	742740.HMPREF9474_02251	85.9	1.94e-21	Putative phage holin Dp-1	N/A
Pfam	UHGV-0883735_34	PF16938	N/A	N/A	Putative phage holin Dp-1	Phage_holin_Dp1
structural_annotation	UHGV-0883735_34	PF16938	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0883735_35	33035.JPJF01000090_gene94	77.8	2.49e-17	N/A	N/A
KOfam	UHGV-0883735_36	K21472	67.8	1.7e-19	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-0883735_36	phrog_3578	41.3	0.0000000000021	metallo-endopeptidase	other
UniRef90	UHGV-0883735_36	UniRef90_G9RT42	269.0	0	Peptidase_M23 domain-containing protein	N/A
eggNOG-mapper	UHGV-0883735_36	665956.HMPREF1032_02708	269.0	0	N/A	N/A
Pfam	UHGV-0883735_36	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-0883735_36	PF21086,MF_01450,NF010999,COG3830	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0883735_38	665956.HMPREF1032_03918	81.6	0.000000000000016	prophage protein Bartonella henselae str. Houston-1 gi 49237922 emb CAF27125.1	N/A
PHROG	UHGV-0883735_39	phrog_3287	152.3	2.8026e-45	virion structural protein	head and packaging
eggNOG-mapper	UHGV-0883735_39	665956.HMPREF1032_03917	736.0	0	N/A	N/A
structural_annotation	UHGV-0883735_39	PF11134,MF_01282,TIGR03300,COG5276	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_40	phrog_13046	51.7	0.0000000000000081	N/A	unknown function
eggNOG-mapper	UHGV-0883735_40	1232449.BAHV02000016_gene1817	112.0	2.92e-28	N/A	N/A
structural_annotation	UHGV-0883735_40	PF20387	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_41	phrog_371	135.4	3.09999e-40	major head protein	head and packaging
UniRef90	UHGV-0883735_41	UniRef90_UPI001F183EB8	508.0	0	Mu-like prophage major head subunit gpT family protein	N/A
eggNOG-mapper	UHGV-0883735_41	1226322.HMPREF1545_03848	282.0	0	N/A	N/A
Pfam	UHGV-0883735_41	PF10124	N/A	N/A	Mu-like prophage major head subunit gpT	Mu-like_gpT
structural_annotation	UHGV-0883735_41	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_42	phrog_24113	58.6	8.4e-17	N/A	unknown function
eggNOG-mapper	UHGV-0883735_42	1226322.HMPREF1545_03847	54.3	0.00000018	N/A	N/A
structural_annotation	UHGV-0883735_42	PF11133,COG5471	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_43	phrog_35275	78.9	6e-23	N/A	unknown function
eggNOG-mapper	UHGV-0883735_43	1226322.HMPREF1545_03846	71.6	0.0000000000184	N/A	N/A
PHROG	UHGV-0883735_46	phrog_156	214.1	0	portal protein	head and packaging
eggNOG-mapper	UHGV-0883735_46	693746.OBV_23930	450.0	0	N/A	N/A
structural_annotation	UHGV-0883735_46	PF12236,MF_04120,TIGR01538,COG5518	N/A	N/A	N/A	N/A
KOfam	UHGV-0883735_47	K21523	43.9	0.0000000000012	gp17; terminase, large subunit [EC:3.1.-.-]	N/A
PHROG	UHGV-0883735_47	phrog_2	101.6	1.2e-29	terminase large subunit	head and packaging
UniRef90	UHGV-0883735_47	UniRef90_UPI001F401ABC	688.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0883735_47	316274.Haur_1384	152.0	1.97e-37	N/A	N/A
Pfam	UHGV-0883735_47	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0883735_47	COG4373	N/A	N/A	Mu-like prophage FluMu protein gp28	N/A
structural_annotation	UHGV-0883735_47	PF03354,PF17289,MF_04146,TIGR01547,COG4373	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_49	phrog_2412	62.9	3.4e-18	N/A	unknown function
eggNOG-mapper	UHGV-0883735_49	1203554.HMPREF1476_00247	50.1	0.00000823	N/A	N/A
PHROG	UHGV-0883735_53	phrog_25027	58.4	3e-17	N/A	unknown function
UniRef90	UHGV-0883735_53	UniRef90_A0A1Y3RPR4	144.0	4.93958e-42	ArdcN domain-containing protein	N/A
eggNOG-mapper	UHGV-0883735_53	1399942.U3PBI8_9CAUD	68.6	0.00000000000036	N/A	N/A
structural_annotation	UHGV-0883735_53	PF08401	N/A	N/A	N/A	N/A
PHROG	UHGV-0883735_54	phrog_19458	321.6	0	primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0883735_54	UniRef90_A0A7X5DCK0	227.0	0	LPD15 domain-containing protein	N/A
eggNOG-mapper	UHGV-0883735_54	657322.FPR_26770	369.0	0	N/A	N/A
COG	UHGV-0883735_54	COG4227	N/A	N/A	Antirestriction protein ArdC	N/A
eggNOG-mapper	UHGV-0883735_56	742740.HMPREF9474_00056	117.0	1.29e-30	N/A	N/A
Pfam	UHGV-0883735_56	PF18912	N/A	N/A	Double zinc ribbon domain	DZR_2
structural_annotation	UHGV-0883735_56	COG4068	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0883735_57	PF04545	N/A	N/A	N/A	N/A
UniRef90	UHGV-0883735_58	UniRef90_A0A1C5WAG7	119.0	5.04e-34	Restriction alleviation protein, Lar family	N/A
PHROG	UHGV-0883735_59	phrog_2245	96.1	3.3e-28	nucleoside triphosphate pyrophosphohydrolase	other
UniRef90	UHGV-0883735_59	UniRef90_A0A4U9RLZ8	77.0	1.37e-16	N/A	N/A
eggNOG-mapper	UHGV-0883735_59	428125.CLOLEP_01814	106.0	2.29e-28	COG NOG14118 non supervised orthologous group	N/A
structural_annotation	UHGV-0883735_59	PF12643,MF_01020,TIGR03188	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0883735_61	411462.DORLON_00765	74.7	0.000000000000131	N/A	N/A
UniRef90	UHGV-0883735_64	UniRef90_UPI001C3A10B1	65.9	0.000000000024	Zinc ribbon domain-containing protein	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0883735	Yes	43,545	51	100	1
UHGV-0192379	No	43,545	51	100	1
UHGV-1970298	No	37,571	52	87	1
UHGV-0138932	No	28,051	52	65	1
UHGV-0797537	No	23,991	52	55	1
UHGV-0845563	No	12,967	49	30	1
UHGV-0139919	No	10,065	50	23	1