vOTU vOTU-006172

vOTU: vOTU-006172

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-006172
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp003522105
Taxonomy (UHGV)	vFAM-00005 → vSUBFAM-00160 → vGENUS-02019 → vSUBGEN-13627 → vOTU-006172
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1380046
Biosample ID	SAMEA2042582
Genome length (bp)	43,387 bps
CheckV completeness	100.00% (Complete)
CDS count	64
CDS density	94.54%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4	Total connections	104	Host agreement	85.58
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp003522105	Total connections	4	Host agreement	75

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1380046_1	phrog_16304	65.8	9.1e-19	N/A	unknown function
Pfam	UHGV-1380046_1	PF19808	N/A	N/A	N/A	DUF6291
COG	UHGV-1380046_1	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
KOfam	UHGV-1380046_2	K03111	123.3	3.2e-36	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1380046_2	phrog_44	118.8	5e-35	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380046_2	UniRef90_R5SNS5	144.0	1.12006e-41	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1380046_2	693746.OBV_12860	141.0	3.26993e-41	Single-strand binding protein family	N/A
Pfam	UHGV-1380046_2	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1380046_2	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1380046_2	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1380046_2	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1380046_2	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
KOfam	UHGV-1380046_3	K07455	165.8	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1380046_3	phrog_148	172.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380046_3	UniRef90_UPI0018C50A8E	324.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1380046_3	1196028.ALEF01000043_gene487	218.0	0	RecT family	N/A
Pfam	UHGV-1380046_3	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1380046_3	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1380046_3	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1380046_3	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_4	phrog_434	283.3	0	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380046_4	UniRef90_U2SK35	424.0	0	YqaJ viral recombinase family protein	N/A
eggNOG-mapper	UHGV-1380046_4	1226322.HMPREF1545_00014	424.0	0	YqaJ viral recombinase family	N/A
Pfam	UHGV-1380046_4	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
NCBIFam	UHGV-1380046_4	TIGR03033.1	N/A	N/A	putative phage-type endonuclease	N/A
COG	UHGV-1380046_4	COG5377	N/A	N/A	Phage-related protein, predicted endonuclease	N/A
structural_annotation	UHGV-1380046_4	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_6	phrog_22529	97.5	7.8e-29	N/A	unknown function
UniRef90	UHGV-1380046_6	UniRef90_A0A352RPR8	143.0	2.08e-40	3D domain-containing protein	N/A
eggNOG-mapper	UHGV-1380046_6	1304866.K413DRAFT_1950	109.0	4.84e-27	3D domain protein	N/A
Pfam	UHGV-1380046_6	PF06725	N/A	N/A	3D domain	3D
COG	UHGV-1380046_6	COG3584	N/A	N/A	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	N/A
structural_annotation	UHGV-1380046_6	PF06725,MF_02071,NF040670,COG3584	N/A	N/A	N/A	N/A
KOfam	UHGV-1380046_7	K00571	109.5	4.1e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-1380046_7	phrog_67	96.6	1.2e-28	DNA methyltransferase	other
UniRef90	UHGV-1380046_7	UniRef90_A0A1C6E5W1	437.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-1380046_7	35241.Q9XJE8_BPTU2	365.0	0	helicase activity	N/A
PADLOC	UHGV-1380046_7	MTase_II_00157	92.2	7.5e-27	Type II methyltransferase	RM
Pfam	UHGV-1380046_7	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
structural_annotation	UHGV-1380046_7	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1380046_9	PF11112,COG3311	N/A	N/A	N/A	N/A
UniRef90	UHGV-1380046_11	UniRef90_A0A413FWV9	52.8	0.000000322	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1380046_11	411459.RUMOBE_01022	55.1	0.00000000665	sequence-specific DNA binding	N/A
Pfam	UHGV-1380046_11	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1380046_11	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1380046_11	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1380046_12	UniRef90_UPI000C7BE75B	72.0	0.0000000000000686	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-1380046_12	742738.HMPREF9460_02485	60.8	0.000000000249	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1380046_12	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-1380046_12	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1380046_13	PF13601,MF_01819,TIGR02337,COG3432	N/A	N/A	N/A	N/A
UniRef90	UHGV-1380046_17	UniRef90_R5HRH2	52.0	0.00000835	DNA-binding helix-turn-helix protein	N/A
eggNOG-mapper	UHGV-1380046_17	537007.BLAHAN_06565	48.9	0.00000767	sequence-specific DNA binding	N/A
Pfam	UHGV-1380046_17	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1380046_17	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1380046_17	PF01381,MF_02017,TIGR03070,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1380046_18	K14059	165.4	0	int; integrase	N/A
PHROG	UHGV-1380046_18	phrog_1	167.3	0	integrase	integration and excision
UniRef90	UHGV-1380046_18	UniRef90_A0A1C5W824	534.0	0	Integrase	N/A
eggNOG-mapper	UHGV-1380046_18	693746.OBV_41260	298.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1380046_18	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1380046_18	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-1380046_18	PF00589,MF_01807,TIGR02224,COG4973	N/A	N/A	N/A	N/A
UniRef90	UHGV-1380046_19	UniRef90_A0A843GWV6	106.0	6.23e-28	Rubrerythrin domain-containing protein	N/A
structural_annotation	UHGV-1380046_20	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_21	phrog_16490	50.6	0.000000000000038	N/A	unknown function
eggNOG-mapper	UHGV-1380046_21	397290.C810_05212	65.1	0.000000000614	N/A	N/A
PHROG	UHGV-1380046_22	phrog_22984	44.0	0.0000000000039	N/A	unknown function
KOfam	UHGV-1380046_24	K17733	92.5	4.4e-27	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-1380046_24	phrog_6523	68.0	1.6e-19	endolysin	lysis
UniRef90	UHGV-1380046_24	UniRef90_R5RXG6	217.0	0	Serine-type D-Ala-D-Ala carboxypeptidase	N/A
eggNOG-mapper	UHGV-1380046_24	1519439.JPJG01000023_gene536	204.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
Pfam	UHGV-1380046_24	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
COG	UHGV-1380046_24	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-1380046_24	PF02557,MF_01924,NF000380,COG1876	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_25	phrog_13256	62.4	4.6e-18	N/A	unknown function
eggNOG-mapper	UHGV-1380046_25	1226322.HMPREF1545_00166	72.0	0.00000000000000111	N/A	N/A
eggNOG-mapper	UHGV-1380046_27	1519439.JPJG01000023_gene533	74.3	7.23e-16	N/A	N/A
eggNOG-mapper	UHGV-1380046_28	1519439.JPJG01000060_gene1905	540.0	0	N/A	N/A
Pfam	UHGV-1380046_28	PF18838	N/A	N/A	Large polyvalent protein associated domain 23	LPD23
UniRef90	UHGV-1380046_29	UniRef90_A0A396K636	73.6	0.000000000154	N/A	N/A
eggNOG-mapper	UHGV-1380046_29	1226322.HMPREF1545_00786	112.0	2e-24	N/A	N/A
PHROG	UHGV-1380046_30	phrog_511	186.2	0	internal virion protein	head and packaging
UniRef90	UHGV-1380046_30	UniRef90_A0A8D9UH72	248.0	0	Stabilization protein (Fragment)	N/A
eggNOG-mapper	UHGV-1380046_30	1226322.HMPREF1545_00785	432.0	0	N/A	N/A
structural_annotation	UHGV-1380046_30	PF11134,TIGR03300,NF038126,COG1520	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_32	phrog_7121	69.8	2.5e-20	tail fiber protein	tail
UniRef90	UHGV-1380046_32	UniRef90_UPI001955FC35	118.0	4.06e-25	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1380046_32	1226322.HMPREF1545_00783	84.3	0.00000000000000892	Chaperone of endosialidase	N/A
Pfam	UHGV-1380046_32	PF13884	N/A	N/A	Chaperone of endosialidase	Peptidase_S74
structural_annotation	UHGV-1380046_32	PF07902,NF041249	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_33	phrog_12105	55.7	9.9e-16	N/A	unknown function
PHROG	UHGV-1380046_34	phrog_27545	153.5	0	N/A	unknown function
UniRef90	UHGV-1380046_34	UniRef90_A0A2V2GQB6	170.0	0	Chitin-binding type-3 domain-containing protein	N/A
eggNOG-mapper	UHGV-1380046_34	1519439.JPJG01000060_gene1895	305.0	0	N/A	N/A
Pfam	UHGV-1380046_34	PF02839	N/A	N/A	Carbohydrate-binding module family 5/12	CBM_5_12
structural_annotation	UHGV-1380046_34	PF16170	N/A	N/A	N/A	N/A
KOfam	UHGV-1380046_36	K16628	161.1	0	COL7A; collagen type VII alpha	N/A
PHROG	UHGV-1380046_36	phrog_819	131.1	0	tail protein	tail
UniRef90	UHGV-1380046_36	UniRef90_UPI00068BE71D	347.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-1380046_36	1519439.JPJG01000060_gene1892	347.0	0	Collagen triple helix repeat (20 copies)	N/A
Pfam	UHGV-1380046_36	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
COG	UHGV-1380046_36	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
structural_annotation	UHGV-1380046_36	PF10651,NF033814	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_37	phrog_15239	78.5	5.8e-23	N/A	unknown function
eggNOG-mapper	UHGV-1380046_37	1449126.JQKL01000003_gene1694	51.2	0.000000881	N/A	N/A
PHROG	UHGV-1380046_38	phrog_1357	255.9	0	major head protein	head and packaging
UniRef90	UHGV-1380046_38	UniRef90_A0A8D9UH64	500.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-1380046_38	1449126.JQKL01000003_gene1695	444.0	0	N/A	N/A
NCBIFam	UHGV-1380046_38	TIGR04387.1	N/A	N/A	N4-gp56 family major capsid protein	N/A
structural_annotation	UHGV-1380046_38	PF13252,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_39	phrog_13908	263.8	0	N/A	unknown function
eggNOG-mapper	UHGV-1380046_39	1410650.JHWL01000003_gene2831	100.0	3.06e-21	N/A	N/A
structural_annotation	UHGV-1380046_40	NF011128,COG2868	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_41	phrog_156	319.6	0	portal protein	head and packaging
UniRef90	UHGV-1380046_41	UniRef90_A0A8D9UH10	689.0	0	Portal protein	N/A
eggNOG-mapper	UHGV-1380046_41	748224.HMPREF9436_01396	489.0	0	N/A	N/A
structural_annotation	UHGV-1380046_41	PF16510,MF_04120,TIGR01538,COG4383	N/A	N/A	N/A	N/A
KOfam	UHGV-1380046_42	K06909	104.2	1.5e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1380046_42	phrog_979	175.1	0	terminase large subunit	head and packaging
UniRef90	UHGV-1380046_42	UniRef90_A0A1Y4WJ48	721.0	0	Terminase-like family protein	N/A
eggNOG-mapper	UHGV-1380046_42	718252.FP2_29190	584.0	0	Terminase-like family	N/A
Pfam	UHGV-1380046_42	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1380046_42	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1380046_42	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_43	phrog_606	83.1	3.2e-24	terminase small subunit	head and packaging
UniRef90	UHGV-1380046_43	UniRef90_UPI00195648BB	170.0	0	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-1380046_43	397290.C810_05185	150.0	2.66247e-44	DNA-packaging protein gp3	N/A
Pfam	UHGV-1380046_43	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
structural_annotation	UHGV-1380046_43	PF16677	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1380046_46	445972.ANACOL_00168	47.0	0.00000502	N/A	N/A
UniRef90	UHGV-1380046_49	UniRef90_A0A8D9PDK2	64.7	0.000000000015	Zinc-ribbon containing domain	N/A
PHROG	UHGV-1380046_50	phrog_59	141.4	3.30006e-42	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380046_50	UniRef90_A0A0E3GMP6	110.0	5.26e-28	HNH homing endonuclease	N/A
eggNOG-mapper	UHGV-1380046_50	1610832.A0A0E3GMP6_9CAUD	110.0	8.82e-29	HNH endonuclease	N/A
PADLOC	UHGV-1380046_50	HEase_00016	95.4	1e-27	homing endonuclease	RM
Pfam	UHGV-1380046_50	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-1380046_50	PF13392	N/A	N/A	HNH endonuclease	HNH_3
PHROG	UHGV-1380046_51	phrog_599	51.7	0.000000000000019	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1380046_51	UniRef90_A0A3R6D179	104.0	2.4e-27	Restriction alleviation protein, Lar family	N/A
Pfam	UHGV-1380046_51	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-1380046_51	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-1380046_51	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-1380046_51	TIGR03655	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_52	phrog_38832	79.5	4.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-1380046_52	665956.HMPREF1032_00143	95.9	9.01e-23	N/A	N/A
PHROG	UHGV-1380046_54	phrog_27610	45.9	0.00000000000069	N/A	unknown function
PHROG	UHGV-1380046_55	phrog_757	227.3	0	DNA methyltransferase	other
UniRef90	UHGV-1380046_55	UniRef90_UPI0006A41431	254.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-1380046_55	1235790.C805_00032	261.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-1380046_55	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1380046_55	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
Pfam	UHGV-1380046_56	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-1380046_56	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
Pfam	UHGV-1380046_57	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-1380046_57	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1380046_57	PF01381,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_59	phrog_190	118.7	4.4e-35	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380046_59	UniRef90_A0A8D9PDD6	135.0	4.65e-38	Endonuclease	N/A
eggNOG-mapper	UHGV-1380046_59	1226322.HMPREF1545_00295	128.0	1.38e-35	N/A	N/A
Pfam	UHGV-1380046_59	PF06356	N/A	N/A	N/A	DUF1064
structural_annotation	UHGV-1380046_59	PF06356	N/A	N/A	N/A	N/A
KOfam	UHGV-1380046_62	K02315	176.2	0	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1380046_62	phrog_50	152.6	2.8026e-45	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1380046_62	UniRef90_UPI00137A9A0F	287.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-1380046_62	203119.Cthe_2467	257.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1380046_62	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
NCBIFam	UHGV-1380046_62	NF005992.0	N/A	N/A	hypothetical protein	N/A
COG	UHGV-1380046_62	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1380046_62	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1380046_63	phrog_9474	50.8	0.000000000000033	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1380046_63	1265490.JHVY01000003_gene3091	59.3	0.000000000696	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1380046	Yes	43,387	57	100	1
UHGV-0044047	No	43,381	57	100	1
UHGV-0045322	No	43,499	57	100	1
UHGV-1414866	No	43,499	57	100	1