vOTU vOTU-006504

vOTU: vOTU-006504

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-006504
Number of genomes	5
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-02433 → vSUBGEN-14105 → vOTU-006504
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0178808
Biosample ID	N/A
Genome length (bp)	43,645 bps
CheckV completeness	100.00% (Complete)
CDS count	75
CDS density	89.54%
tRNA count	2
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	538	Host agreement	98.51
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0178808_3	phrog_15303	122.2	2.1e-36	N/A	unknown function
KOfam	UHGV-0178808_5	K07273	178.8	0	acm; lysozyme	N/A
PHROG	UHGV-0178808_5	phrog_291	134.6	8.3e-40	endolysin	lysis
UniRef90	UHGV-0178808_5	UniRef90_A0A564U0D3	368.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0178808_5	718252.FP2_04890	235.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0178808_5	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0178808_5	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0178808_5	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_6	phrog_1382	47.5	0.00000000000012	N/A	unknown function
eggNOG-mapper	UHGV-0178808_8	748224.HMPREF9436_01407	186.0	0	COG NOG18825 non supervised orthologous group	N/A
UniRef90	UHGV-0178808_9	UniRef90_A0A412ZBV2	75.1	0.000000000000304	MtfA protein	N/A
eggNOG-mapper	UHGV-0178808_9	1120933.ATUY01000004_gene1010	69.7	0.00000000000599	N/A	N/A
structural_annotation	UHGV-0178808_9	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_12	phrog_3558	269.4	0	tail protein	tail
UniRef90	UHGV-0178808_12	UniRef90_UPI001C01D15B	850.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0178808_12	411465.PEPMIC_00746	127.0	4.69e-28	Prophage endopeptidase tail	N/A
Pfam	UHGV-0178808_12	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0178808_12	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0178808_12	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0178808_12	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_13	phrog_9959	96.7	1.5e-28	tail length tape measure protein	tail
UniRef90	UHGV-0178808_13	UniRef90_A0A844DDD5	561.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0178808_13	663278.Ethha_0487	160.0	5.3e-37	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0178808_13	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0178808_13	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0178808_13	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0178808_13	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_15	phrog_885	63.7	2.4e-18	major tail protein	tail
eggNOG-mapper	UHGV-0178808_15	1111121.HMPREF1247_0789	152.0	2.8026e-44	N/A	N/A
structural_annotation	UHGV-0178808_15	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_16	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_17	phrog_17977	42.1	0.000000000013	N/A	unknown function
UniRef90	UHGV-0178808_17	UniRef90_A0A844DHJ8	119.0	2.31e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0178808_17	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_19	phrog_247	208.1	0	major head protein	head and packaging
UniRef90	UHGV-0178808_19	UniRef90_UPI001BA5448B	237.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0178808_19	33035.JPJF01000106_gene3132	362.0	0	N/A	N/A
Pfam	UHGV-0178808_19	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0178808_19	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_20	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_21	phrog_478	125.6	2.3e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-0178808_21	UniRef90_A0A373Q857	164.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0178808_21	1111121.HMPREF1247_0834	95.5	1.58e-23	N/A	N/A
PHROG	UHGV-0178808_22	phrog_5	48.4	0.00000000000025	tail completion or Neck1 protein	connector
UniRef90	UHGV-0178808_22	UniRef90_A0A6N7TNP6	297.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0178808_22	1123309.AQYB01000018_gene814	90.1	4.48e-21	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0178808_22	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0178808_22	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_24	phrog_8680	203.1	0	N/A	unknown function
UniRef90	UHGV-0178808_24	UniRef90_A0A844D688	455.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178808_24	1423790.BN53_04265	182.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0178808_24	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0178808_24	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0178808_24	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_25	phrog_2468	80.4	1.6e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0178808_25	UniRef90_A0A6N7TLR7	614.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0178808_25	1504822.CCNO01000013_gene286	110.0	1.44e-23	cell adhesion	N/A
Pfam	UHGV-0178808_25	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0178808_25	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_25	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_26	phrog_64	122.8	1.3e-36	portal protein	head and packaging
UniRef90	UHGV-0178808_26	UniRef90_A0A6N7TNT3	882.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0178808_26	642492.Clole_2764	81.6	0.0000000000000973	phage portal protein, SPP1	N/A
Pfam	UHGV-0178808_26	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0178808_26	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0178808_27	K06909	142.6	3.69943e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0178808_27	phrog_10250	175.8	0	N/A	unknown function
UniRef90	UHGV-0178808_27	UniRef90_A0A844D8I4	845.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0178808_27	411490.ANACAC_00783	496.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0178808_27	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0178808_27	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0178808_27	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0178808_27	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0178808_27	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178808_28	UniRef90_UPI0018CC2891	116.0	2.01e-30	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178808_28	1235790.C805_00037	116.0	5.5e-31	N/A	N/A
structural_annotation	UHGV-0178808_28	PF04218	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_29	phrog_36	42.2	0.000000000015	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0178808_29	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0178808_31	K01160	58.2	2.8e-16	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0178808_31	phrog_34	59.3	9.5e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178808_31	UniRef90_A0A6N7TND6	216.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0178808_31	875454.BAEW01000002_gene491	133.0	9.61e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0178808_31	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0178808_31	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0178808_31	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_32	phrog_3136	114.1	6.2e-34	N/A	unknown function
UniRef90	UHGV-0178808_32	UniRef90_A0A6N7TMC2	178.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0178808_32	1235793.C809_02645	54.7	0.00000233	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0178808_32	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0178808_32	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_38	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_39	phrog_15768	126.1	3.3e-37	N/A	unknown function
UniRef90	UHGV-0178808_39	UniRef90_A0A844D5V0	208.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0178808_39	748224.HMPREF9436_03357	140.0	3.58e-38	N/A	N/A
Pfam	UHGV-0178808_39	PF19808	N/A	N/A	N/A	DUF6291
structural_annotation	UHGV-0178808_39	PF19808	N/A	N/A	N/A	N/A
KOfam	UHGV-0178808_40	K03111	40.3	0.000000000069	ssb; single-strand DNA-binding protein	N/A
UniRef90	UHGV-0178808_40	UniRef90_UPI001CBB85F6	99.4	5.73e-23	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0178808_40	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_41	phrog_2760	182.1	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0178808_41	UniRef90_A0A3A6EAW6	486.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0178808_41	469378.Ccur_02960	151.0	5.13996e-42	RecT family	N/A
Pfam	UHGV-0178808_41	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0178808_41	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0178808_41	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0178808_41	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_42	phrog_674	150.9	8.40779e-45	N/A	unknown function
UniRef90	UHGV-0178808_42	UniRef90_A0A3A6E846	476.0	0	N/A	N/A
eggNOG-mapper	UHGV-0178808_42	556268.OFAG_00840	89.0	1.09e-17	N/A	N/A
Pfam	UHGV-0178808_42	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0178808_42	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_43	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_45	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_46	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_47	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_49	phrog_4433	168.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0178808_49	394503.Ccel_3068	89.0	2.11e-18	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0178808_49	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0178808_49	NF007410	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_50	phrog_15946	76.3	2.1e-23	N/A	unknown function
eggNOG-mapper	UHGV-0178808_50	1041147.AUFB01000014_gene330	54.3	0.00000107	N/A	N/A
PHROG	UHGV-0178808_51	phrog_4652	92.7	7.6e-28	N/A	unknown function
eggNOG-mapper	UHGV-0178808_51	397290.C810_01459	159.0	0	N/A	N/A
structural_annotation	UHGV-0178808_51	TIGR02582,COG1604	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178808_57	UniRef90_A0A1C7FQD9	74.3	4.97e-16	Transcriptional regulator	N/A
structural_annotation	UHGV-0178808_57	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_58	phrog_8	43.6	0.0000000000066	transcriptional regulator	transcription regulation
UniRef90	UHGV-0178808_58	UniRef90_UPI001CBE4822	96.3	1.22e-23	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178808_58	1226322.HMPREF1545_00148	79.7	7.96e-18	Transcriptional	N/A
Pfam	UHGV-0178808_58	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178808_58	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178808_58	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178808_61	UniRef90_A0A1W2B3I7	96.7	7.45e-21	Ig-like domain (Group 2)	N/A
eggNOG-mapper	UHGV-0178808_61	321955.AAGP01000017_gene2211	55.8	0.000000308	N/A	N/A
structural_annotation	UHGV-0178808_61	PF16900,NF040991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0178808_64	UniRef90_A0A6N7TLT0	335.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0178808_64	266265.Bxe_A3948	51.6	0.00000183	Helix-turn-helix domain	N/A
Pfam	UHGV-0178808_64	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0178808_64	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0178808_64	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0178808_65	K14059	141.7	9.10003e-42	int; integrase	N/A
PHROG	UHGV-0178808_65	phrog_1	165.7	0	integrase	integration and excision
UniRef90	UHGV-0178808_65	UniRef90_A0A6N7TNQ4	731.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0178808_65	411471.SUBVAR_05137	258.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0178808_65	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0178808_65	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0178808_65	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0178808_67	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_68	phrog_20016	206.6	0	N/A	unknown function
UniRef90	UHGV-0178808_68	UniRef90_A0A285PT46	222.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0178808_68	1226322.HMPREF1545_00077	187.0	0	N/A	N/A
structural_annotation	UHGV-0178808_68	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0178808_69	phrog_16490	195.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0178808_69	397290.C810_01328	126.0	1.48e-31	N/A	N/A
PHROG	UHGV-0178808_70	phrog_22984	70.3	2.7e-20	N/A	unknown function
PHROG	UHGV-0178808_71	phrog_21718	87.8	1.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-0178808_71	397290.C810_05210	79.7	1.14e-16	N/A	N/A
PHROG	UHGV-0178808_72	phrog_3754	96.1	3.3e-28	N/A	unknown function
eggNOG-mapper	UHGV-0178808_72	1235790.C805_00054	111.0	4.56e-30	N/A	N/A
UniRef90	UHGV-0178808_75	UniRef90_A0A1Q9JGI6	116.0	1.01e-30	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0178808_75	1118055.CAGU01000028_gene99	110.0	3.31e-29	N/A	N/A
structural_annotation	UHGV-0178808_75	PF03869,NF041793,COG4691	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0178808	Yes	43,645	55	100	1
UHGV-0192797	No	43,456	55	100	1
UHGV-0171982	No	31,537	55	75	1
UHGV-0174357	No	11,972	52	28	1
UHGV-0171988	No	11,334	53	27	1