vOTU vOTU-006612

vOTU: vOTU-006612

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-006612
Number of genomes	5
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia
Taxonomy (UHGV)	vFAM-00027 → vSUBFAM-00865 → vGENUS-00812 → vSUBGEN-00621 → vOTU-006612
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis
Host range breadth	Species
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0278096
Biosample ID	SAMN10781839
Genome length (bp)	48,693 bps
CheckV completeness	100.00% (Complete)
CDS count	84
CDS density	92.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter faecis	Total connections	319	Host agreement	96.55
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia	Total connections	3	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0278096_4	UniRef90_A0A1T4M3S7	126.0	9.69e-35	Pyrimidine dimer DNA glycosylase /DNA-(Apurinic or apyrimidinic site) lyase	N/A
eggNOG-mapper	UHGV-0278096_4	1151292.QEW_2203	123.0	4.12e-34	Pyrimidine dimer DNA glycosylase	N/A
Pfam	UHGV-0278096_4	PF03013	N/A	N/A	Pyrimidine dimer DNA glycosylase	Pyr_excise
structural_annotation	UHGV-0278096_4	PF03013,TIGR02328	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_7	K03553	177.9	0	recA; recombination protein RecA	N/A
PHROG	UHGV-0278096_7	phrog_97	178.1	0	UvsX-like recombinase	other
UniRef90	UHGV-0278096_7	UniRef90_A0A843GSV7	407.0	0	RECA_3 domain-containing protein	N/A
eggNOG-mapper	UHGV-0278096_7	1329250.WOSG25_030820	143.0	6.31e-37	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	N/A
Pfam	UHGV-0278096_7	PF00154	N/A	N/A	recA bacterial DNA recombination protein	RecA
COG	UHGV-0278096_7	COG0468	N/A	N/A	RecA/RadA recombinase	N/A
structural_annotation	UHGV-0278096_7	PF00154,MF_00268,TIGR02012,COG0468	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0278096_11	445972.ANACOL_01837	58.5	0.00000000301	N/A	N/A
KOfam	UHGV-0278096_13	K01493	91.7	1.1e-26	comEB; dCMP deaminase [EC:3.5.4.12]	N/A
PHROG	UHGV-0278096_13	phrog_174	120.1	1.1e-35	dCMP deaminase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0278096_13	UniRef90_D3E3M5	212.0	0	CMP/dCMP deaminase	N/A
eggNOG-mapper	UHGV-0278096_13	634498.mru_1286	212.0	0	deaminase	N/A
PADLOC	UHGV-0278096_13	dCTPase	43.1	3.5e-18	N/A	N/A
Pfam	UHGV-0278096_13	PF00383	N/A	N/A	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
COG	UHGV-0278096_13	COG2131	N/A	N/A	Deoxycytidylate deaminase	N/A
structural_annotation	UHGV-0278096_13	PF00383,TIGR02571,COG2131	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_15	phrog_1990	51.8	0.000000000000011	Cas4-domain exonuclease	DNA, RNA and nucleotide metabolism
COG	UHGV-0278096_15	COG1468	N/A	N/A	CRISPR/Cas system-associated exonuclease Cas4, RecB family	N/A
structural_annotation	UHGV-0278096_15	PF01930,MF_03030,TIGR00372,COG5377	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_17	phrog_159	41.0	0.000000000021	RuvC-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0278096_17	PF02075,MF_00034,NF000711,COG0817	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_19	phrog_1909	153.7	1.4013e-45	N/A	unknown function
eggNOG-mapper	UHGV-0278096_19	1340826.S5XYF3_9CAUD	58.5	0.000000372	N/A	N/A
KOfam	UHGV-0278096_20	K09882	60.0	6.3e-20	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0278096_20	phrog_249	85.3	2e-30	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0278096_20	UniRef90_UPI0013FDB9BA	96.3	1.61e-19	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0278096_20	278957.ABEA03000120_gene1205	98.2	1.01e-20	Associated with various cellular activities	N/A
Pfam	UHGV-0278096_20	PF00004	N/A	N/A	ATPase family associated with various cellular activities (AAA)	AAA
COG	UHGV-0278096_20	COG0714	N/A	N/A	MoxR-like ATPase	N/A
PHROG	UHGV-0278096_24	phrog_2002	51.1	0.000000000000012	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
structural_annotation	UHGV-0278096_24	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0278096_25	PF21138,NF009630,COG2375	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_29	K03469	125.5	6.4e-37	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0278096_29	phrog_531	145.0	3.60134e-43	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0278096_29	UniRef90_D0RRL2	108.0	1.32e-27	Ribonuclease H	N/A
eggNOG-mapper	UHGV-0278096_29	684719.HIMB114_00001120	108.0	2.22e-28	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	N/A
Pfam	UHGV-0278096_29	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0278096_29	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0278096_29	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0278096_30	PF14084	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_37	phrog_30343	188.6	0	N/A	unknown function
UniRef90	UHGV-0278096_37	UniRef90_A0A7X5CEC9	102.0	1.77e-24	N-acetyltransferase	N/A
eggNOG-mapper	UHGV-0278096_37	397291.C804_00939	187.0	0	N/A	N/A
structural_annotation	UHGV-0278096_37	PF11039,MF_02210,TIGR03585,COG1670	N/A	N/A	N/A	N/A
UniRef90	UHGV-0278096_40	UniRef90_A0A6H1MM30	66.6	0.0000000000177	DNA packaging protein	N/A
structural_annotation	UHGV-0278096_40	PF16677	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_41	K06909	286.9	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0278096_41	phrog_2	114.5	1.5e-33	terminase large subunit	head and packaging
UniRef90	UHGV-0278096_41	UniRef90_A0A349YI29	462.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0278096_41	1443122.Z958_p0035	443.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0278096_41	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0278096_41	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0278096_41	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0278096_41	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0278096_41	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_43	phrog_443	58.0	2.7e-16	holin	lysis
UniRef90	UHGV-0278096_43	UniRef90_UPI000CF1F0AD	93.6	1.47e-23	holin	N/A
eggNOG-mapper	UHGV-0278096_43	626523.GCWU000342_01012	82.0	1.41e-19	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0278096_43	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0278096_43	PF16945	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_44	K17733	160.8	0	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	N/A
PHROG	UHGV-0278096_44	phrog_2649	153.6	1.4013e-45	endolysin	lysis
UniRef90	UHGV-0278096_44	UniRef90_UPI0018972856	240.0	0	M15 family metallopeptidase	N/A
eggNOG-mapper	UHGV-0278096_44	397290.C810_03258	203.0	0	D-alanyl-D-alanine carboxypeptidase	N/A
AcrCatalog	UHGV-0278096_44	cluster_9940	55.5	0.0000000000194	NA	N/A
Pfam	UHGV-0278096_44	PF13539	N/A	N/A	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
Pfam	UHGV-0278096_44	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0278096_44	COG1876	N/A	N/A	LD-carboxypeptidase LdcB, LAS superfamily	N/A
structural_annotation	UHGV-0278096_44	PF02557,PF18342,MF_01924,NF007557,COG4991,COG2173	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_45	phrog_64	127.0	1.2e-37	portal protein	head and packaging
UniRef90	UHGV-0278096_45	UniRef90_A0A843GSM3	434.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0278096_45	59241.E7DNA2_BPDP1	97.4	1.6e-18	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0278096_45	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0278096_45	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_46	phrog_1657	178.4	0	head morphogenesis	head and packaging
UniRef90	UHGV-0278096_46	UniRef90_A0A1R5GR66	184.0	0	ADPrib_exo_Tox domain-containing protein	N/A
eggNOG-mapper	UHGV-0278096_46	1582149.A0A0A8WEF5_9CAUD	184.0	0	Phage Mu protein F like protein	N/A
structural_annotation	UHGV-0278096_46	PF04233,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_50	phrog_1315	40.6	0.000000000039	N/A	unknown function
PHROG	UHGV-0278096_51	phrog_2303	68.5	1e-19	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-0278096_51	1121871.AUAT01000035_gene1288	57.8	0.00000023	N/A	N/A
PHROG	UHGV-0278096_52	phrog_909	71.9	8e-21	major head protein	head and packaging
eggNOG-mapper	UHGV-0278096_52	1158612.I580_01911	72.0	0.000000000000022	N/A	N/A
structural_annotation	UHGV-0278096_52	PF02924	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_53	phrog_29	244.7	0	major head protein	head and packaging
UniRef90	UHGV-0278096_53	UniRef90_A0A843GQH0	446.0	0	Major capsid protein	N/A
eggNOG-mapper	UHGV-0278096_53	1158612.I580_01912	312.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0278096_53	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0278096_53	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0278096_54	PF07498	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_55	phrog_4020	52.4	0.0000000000000087	N/A	unknown function
structural_annotation	UHGV-0278096_56	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0278096_57	580331.Thit_1383	84.7	1.12e-19	N/A	N/A
structural_annotation	UHGV-0278096_57	PF04883,TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_58	phrog_7585	63.5	4.2e-18	N/A	unknown function
eggNOG-mapper	UHGV-0278096_58	748727.CLJU_c31260	68.9	0.000000000000358	N/A	N/A
structural_annotation	UHGV-0278096_58	PF05657,NF040576,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_59	phrog_6686	103.1	1.5e-30	tail tube protein	tail
UniRef90	UHGV-0278096_59	UniRef90_A0A1C6KI12	152.0	2.59941e-42	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0278096_59	871584.D9ZNE2_9CAUD	77.0	0.00000000000000908	N/A	N/A
structural_annotation	UHGV-0278096_59	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_60	phrog_6280	127.7	5.5e-38	N/A	unknown function
UniRef90	UHGV-0278096_60	UniRef90_A0A8J6PH67	112.0	5.77e-29	Esterase	N/A
eggNOG-mapper	UHGV-0278096_60	445335.CBN_3078	109.0	1.04e-28	N/A	N/A
PHROG	UHGV-0278096_61	phrog_6541	62.9	2.8e-18	N/A	unknown function
eggNOG-mapper	UHGV-0278096_61	1196322.A370_04057	50.4	0.000000255	N/A	N/A
PHROG	UHGV-0278096_62	phrog_1533	504.9	0	tail length tape measure protein	tail
UniRef90	UHGV-0278096_62	UniRef90_UPI0009BD946D	253.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0278096_62	1321782.HMPREF1986_01369	387.0	0	Phage tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0278096_62	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0278096_62	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0278096_62	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0278096_62	PF10145,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_63	phrog_36410	70.2	1.9e-20	N/A	unknown function
UniRef90	UHGV-0278096_63	UniRef90_A0A7X9C3E1	206.0	0	Phage tail family protein	N/A
eggNOG-mapper	UHGV-0278096_63	431943.CKL_4056	106.0	4.1e-24	Phage tail protein	N/A
Pfam	UHGV-0278096_63	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
COG	UHGV-0278096_63	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0278096_63	PF20753,PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_64	phrog_538	221.9	0	minor tail protein	tail
UniRef90	UHGV-0278096_64	UniRef90_UPI000666E2A6	182.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0278096_64	768704.Desmer_4453	160.0	8.67404e-43	Siphovirus ReqiPepy6 Gp37-like protein	N/A
Pfam	UHGV-0278096_64	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0278096_64	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0278096_65	phrog_1220	267.4	0	head protein	head and packaging
UniRef90	UHGV-0278096_65	UniRef90_E2ELJ8	174.0	0	Truncated putative phage structural protein	N/A
eggNOG-mapper	UHGV-0278096_65	588581.Cpap_1262	179.0	0	COG NOG18825 non supervised orthologous group	N/A
eggNOG-mapper	UHGV-0278096_67	1232452.BAIB02000007_gene1607	69.3	0.000000000000281	N/A	N/A
structural_annotation	UHGV-0278096_75	PF07498,PF09465,MF_00749,NF037951,COG1862	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_77	K02316	122.8	2.8e-36	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0278096_77	phrog_47	134.3	1.2e-39	DNA primase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0278096_77	UniRef90_A0A843GN62	362.0	0	Toprim domain-containing protein	N/A
eggNOG-mapper	UHGV-0278096_77	1121947.AUHK01000013_gene615	90.5	3.64e-17	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0278096_77	drt-UG29	42.4	8.7e-24	DRT	DRT
Pfam	UHGV-0278096_77	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
Pfam	UHGV-0278096_77	PF13155	N/A	N/A	Toprim-like	Toprim_2
COG	UHGV-0278096_77	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0278096_77	PF01807,PF13155,MF_00974,TIGR01391,COG0358	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0278096_78	PF08804	N/A	N/A	N/A	N/A
UniRef90	UHGV-0278096_79	UniRef90_A0A7X8WD06	72.8	0.0000000000000425	N/A	N/A
Pfam	UHGV-0278096_79	PF08761	N/A	N/A	dUTPase	dUTPase_2
structural_annotation	UHGV-0278096_79	PF12643,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_80	K22226	107.6	1.4e-31	ahbC; Fe-coproporphyrin III synthase	N/A
UniRef90	UHGV-0278096_80	UniRef90_A0A7C4ZU75	108.0	8.84e-24	Radical SAM protein	N/A
eggNOG-mapper	UHGV-0278096_80	403833.Pmob_1565	72.0	0.0000000000188	radical SAM domain protein	N/A
PADLOC	UHGV-0278096_80	pVip-near-kinase	50.0	0.000000000000043	Viperins associated with kinases	Viperin
Pfam	UHGV-0278096_80	PF04055	N/A	N/A	Radical SAM superfamily	Radical_SAM
Pfam	UHGV-0278096_80	PF13186	N/A	N/A	Iron-sulfur cluster-binding domain	SPASM
COG	UHGV-0278096_80	COG0535	N/A	N/A	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	N/A
PHROG	UHGV-0278096_81	phrog_761	41.2	0.0000000000055	thymidylate kinase	other
structural_annotation	UHGV-0278096_81	PF01591,MF_00165,NF005250,COG0125	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_83	K00560	125.6	4.2e-37	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	N/A
PHROG	UHGV-0278096_83	phrog_5131	157.5	0	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0278096_83	UniRef90_A0A4Y5FGW2	185.0	0	Thymidylate synthase	N/A
eggNOG-mapper	UHGV-0278096_83	1084719.G3MA60_9CAUD	142.0	8.91e-38	Thymidylate synthase	N/A
Pfam	UHGV-0278096_83	PF00303	N/A	N/A	Thymidylate synthase	Thymidylat_synt
structural_annotation	UHGV-0278096_83	PF00303,MF_01686,NF002497,COG0207	N/A	N/A	N/A	N/A
KOfam	UHGV-0278096_84	K02337	691.1	0	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	N/A
PHROG	UHGV-0278096_84	phrog_405	643.9	0	DNA polymerase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0278096_84	UniRef90_A0A843GPT9	1155.0	0	DNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-0278096_84	224324.aq_1008	412.0	0	TIGRFAM DNA polymerase III, alpha subunit	N/A
Pfam	UHGV-0278096_84	PF02811	N/A	N/A	PHP domain	PHP
Pfam	UHGV-0278096_84	PF07733	N/A	N/A	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
Pfam	UHGV-0278096_84	PF17657	N/A	N/A	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
Pfam	UHGV-0278096_84	PF14579	N/A	N/A	Helix-hairpin-helix motif	HHH_6
NCBIFam	UHGV-0278096_84	TIGR00594.1	N/A	N/A	DNA polymerase III subunit alpha	N/A
COG	UHGV-0278096_84	COG0587	N/A	N/A	DNA polymerase III, alpha subunit	N/A
structural_annotation	UHGV-0278096_84	PF07733,PF02811,PF17657,PF14579,MF_01902,TIGR00594,COG0587	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0278096	Yes	48,693	33	100	1
UHGV-0137756	No	48,717	33	100	1
UHGV-0392383	No	48,717	33	100	1
UHGV-1372827	No	48,717	33	100	1
UHGV-1978668	No	48,792	33	98	1