vOTU vOTU-006618

vOTU: vOTU-006618

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-006618
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00118 → vSUBFAM-02928 → vGENUS-11134 → vSUBGEN-15476 → vOTU-006618
Host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae
Host range breadth	Species
Lifestyle	lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0032406
Biosample ID	SAMEA4766271
Genome length (bp)	54,158 bps
CheckV completeness	100.00% (Complete)
CDS count	92
CDS density	90.90%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	Total connections	2	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0032406_4	PF05732,MF_01177,TIGR01610,COG0640	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_5	phrog_850	138.3	7.10038e-42	RNA-binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032406_5	UniRef90_A0A6G6XXU4	109.0	1.87e-22	Putative Ro sixty-related protein	N/A
eggNOG-mapper	UHGV-0032406_5	1357423.S5MD58_9CAUD	150.0	1.38e-37	N/A	N/A
Pfam	UHGV-0032406_5	PF11443	N/A	N/A	N/A	DUF2828
structural_annotation	UHGV-0032406_5	PF11443,MF_01340,NF041674,COG1240	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_6	phrog_8684	69.2	3.6e-29	N/A	unknown function
UniRef90	UHGV-0032406_6	UniRef90_A0A6I5GEM3	90.1	2.03e-20	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-0032406_6	40522.A8ASP1_BPA50	80.9	2.02e-17	YopX protein	N/A
Pfam	UHGV-0032406_6	PF09643	N/A	N/A	YopX protein	YopX
NCBIFam	UHGV-0032406_6	TIGR01671.1	N/A	N/A	phage conserved hypothetical protein TIGR01671	N/A
structural_annotation	UHGV-0032406_6	PF09643,TIGR01671	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_14	phrog_38	117.7	9.1e-35	terminase large subunit	head and packaging
UniRef90	UHGV-0032406_14	UniRef90_UPI001C56B93E	62.8	0.00000116	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0032406_14	428127.EUBDOL_01551	157.0	3.33e-40	chromosome segregation	N/A
NCBIFam	UHGV-0032406_14	TIGR01630.1	N/A	N/A	phage terminase large subunit	N/A
COG	UHGV-0032406_14	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032406_14	PF17289,MF_04147,NF033889,COG5410,COG5362	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_16	phrog_64	153.1	1.4013e-45	portal protein	head and packaging
UniRef90	UHGV-0032406_16	UniRef90_A0A7X7EMS9	333.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0032406_16	428127.EUBDOL_01552	194.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0032406_16	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0032406_16	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_18	phrog_909	49.2	0.000000000000098	major head protein	head and packaging
PHROG	UHGV-0032406_19	phrog_29	173.0	0	major head protein	head and packaging
UniRef90	UHGV-0032406_19	UniRef90_UPI0004AE1FFD	179.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0032406_19	1232443.BAIA02000078_gene29	179.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-0032406_19	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-0032406_19	PF03864,MF_04133,NF041162,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032406_22	PF19586,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032406_24	PF06141	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032406_25	1121333.JMLH01000047_gene1013	127.0	3.95e-35	N/A	N/A
structural_annotation	UHGV-0032406_25	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_28	phrog_5493	46.1	0.00000000000017	tail length tape measure protein	tail
structural_annotation	UHGV-0032406_29	PF20458,TIGR02126,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032406_31	PF10651,NF038186	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_32	phrog_17273	44.4	0.00000000000047	N/A	unknown function
Pfam	UHGV-0032406_32	PF03382	N/A	N/A	N/A	DUF285
PHROG	UHGV-0032406_34	phrog_21765	52.4	0.0000000000000047	N/A	unknown function
UniRef90	UHGV-0032406_35	UniRef90_A0A3E2B3T2	77.0	0.00000000000000124	N/A	N/A
Pfam	UHGV-0032406_40	PF04647	N/A	N/A	Accessory gene regulator B	AgrB
PHROG	UHGV-0032406_42	phrog_21718	40.9	0.000000000029	N/A	unknown function
PHROG	UHGV-0032406_45	phrog_16490	101.3	3.4e-31	N/A	unknown function
eggNOG-mapper	UHGV-0032406_45	476272.RUMHYD_01770	69.3	0.000000000023	N/A	N/A
UniRef90	UHGV-0032406_46	UniRef90_A0A345BNU6	159.0	0	Spore surface glycoprotein	N/A
structural_annotation	UHGV-0032406_46	PF18573,NF033147	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032406_47	445972.ANACOL_01884	55.5	0.000000133	N/A	N/A
PHROG	UHGV-0032406_48	phrog_3754	41.6	0.0000000000053	N/A	unknown function
PHROG	UHGV-0032406_55	phrog_155	44.1	0.0000000000036	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032406_55	UniRef90_UPI0008FA9D83	85.5	3.19e-17	ERF family protein	N/A
eggNOG-mapper	UHGV-0032406_55	1415775.U729_2586	77.4	0.0000000000000075	ERF superfamily	N/A
Pfam	UHGV-0032406_55	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-0032406_55	PF04404,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_56	phrog_374	214.9	0	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032406_56	UniRef90_A0A3Q9RLP4	184.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	N/A
eggNOG-mapper	UHGV-0032406_56	673376.F2VHW3_9CAUD	200.0	0	sequence-specific DNA binding transcription factor activity	N/A
structural_annotation	UHGV-0032406_56	PF17375	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_57	phrog_434	61.0	2e-17	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032406_57	UniRef90_B0PAM4	139.0	2.89e-38	YqaJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0032406_57	1462526.BN990_01808	57.4	0.000000134	N/A	N/A
Pfam	UHGV-0032406_57	PF09588	N/A	N/A	YqaJ-like viral recombinase domain	YqaJ
structural_annotation	UHGV-0032406_57	PF09588,MF_03030,TIGR03033,COG5377	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0032406_60	PF11506,MF_00984,NF006039,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_61	phrog_59	113.1	1.4e-33	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032406_61	UniRef90_UPI001EFA3BC2	156.0	2.8026e-45	NUMOD4 motif-containing HNH endonuclease	N/A
eggNOG-mapper	UHGV-0032406_61	525378.HMPREF0793_1842	145.0	1.34006e-41	HNH endonuclease	N/A
PADLOC	UHGV-0032406_61	HEase_00016	53.5	0.0000000000000019	homing endonuclease	RM
Pfam	UHGV-0032406_61	PF07463	N/A	N/A	NUMOD4 motif	NUMOD4
Pfam	UHGV-0032406_61	PF13392	N/A	N/A	HNH endonuclease	HNH_3
structural_annotation	UHGV-0032406_61	PF13392,PF20987	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_62	phrog_19106	130.4	1.3e-38	N/A	unknown function
UniRef90	UHGV-0032406_62	UniRef90_K1SYJ2	109.0	1.2e-26	GIY-YIG domain-containing protein	N/A
eggNOG-mapper	UHGV-0032406_62	658655.HMPREF0988_00875	114.0	2.77e-29	N/A	N/A
Pfam	UHGV-0032406_62	PF01541	N/A	N/A	GIY-YIG catalytic domain	GIY-YIG
structural_annotation	UHGV-0032406_62	TIGR01453	N/A	N/A	N/A	N/A
KOfam	UHGV-0032406_63	K00571	170.7	0	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0032406_63	phrog_67	173.6	0	DNA methyltransferase	other
UniRef90	UHGV-0032406_63	UniRef90_A0A1G5EUM7	351.0	0	Methyltransferase	N/A
eggNOG-mapper	UHGV-0032406_63	1121097.JCM15093_1746	308.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0032406_63	MTase_II_00037	154.8	0	Type II methyltransferase	RM
Pfam	UHGV-0032406_63	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0032406_63	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0032406_63	PF01555,MF_01872,NF008572,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0032406_66	phrog_5968	101.0	1.2e-29	replisome organizer	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0032406_66	718252.FP2_01000	157.0	1.17008e-42	N/A	N/A
Pfam	UHGV-0032406_66	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
COG	UHGV-0032406_66	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
KOfam	UHGV-0032406_67	K02315	147.2	1.30321e-43	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-0032406_67	phrog_50	145.3	3.89561e-43	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032406_67	UniRef90_F7V9D6	129.0	2.31e-32	Putative DnaC	N/A
eggNOG-mapper	UHGV-0032406_67	1399942.U3PBJ1_9CAUD	125.0	1.57e-31	IstB-like ATP binding protein	N/A
Pfam	UHGV-0032406_67	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
structural_annotation	UHGV-0032406_67	PF01695,MF_01919,NF005992,COG1484	N/A	N/A	N/A	N/A
KOfam	UHGV-0032406_69	K00558	108.0	4.2e-38	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-0032406_69	phrog_116	109.6	2.66247e-44	DNA methyltransferase	other
UniRef90	UHGV-0032406_69	UniRef90_A0A7X9EDR0	395.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-0032406_69	97139.C824_04749	210.0	0	PFAM C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-0032406_69	MTase_II_00174	109.2	2.1e-37	Type II methyltransferase	RM
Pfam	UHGV-0032406_69	PF14528	N/A	N/A	LAGLIDADG-like domain	LAGLIDADG_3
Pfam	UHGV-0032406_69	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-0032406_69	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-0032406_69	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0032406_71	K14060	118.8	5.6e-35	pinR; putative DNA-invertase from lambdoid prophage Rac	N/A
PHROG	UHGV-0032406_71	phrog_125	117.7	1e-34	DNA invertase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0032406_71	UniRef90_A0A381IYP1	75.5	0.000000000000199	Resolvase	N/A
eggNOG-mapper	UHGV-0032406_71	1499502.EV12_0469	68.9	0.0000000000183	Alternative locus ID	N/A
Pfam	UHGV-0032406_71	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0032406_71	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
COG	UHGV-0032406_71	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0032406_71	PF00239,PF02796,NF009949,COG1961	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0032406_72	1163671.JAGI01000002_gene1275	55.5	0.0000000154	N/A	N/A
PHROG	UHGV-0032406_73	phrog_3136	98.7	2e-29	N/A	unknown function
structural_annotation	UHGV-0032406_73	PF08819,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0032406_87	K22299	44.0	0.000000000004	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0032406_87	phrog_2104	43.3	0.0000000000062	N/A	unknown function
UniRef90	UHGV-0032406_87	UniRef90_F9DNN7	54.3	0.0000000303	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0032406_87	1027292.HMPREF9372_0417	54.3	0.00000000508	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0032406_87	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0032406_87	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
KOfam	UHGV-0032406_88	K03466	169.4	0	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	N/A
PHROG	UHGV-0032406_88	phrog_1358	172.6	0	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0032406_88	UniRef90_A0A1Q6UDE4	137.0	1.21e-32	FtsK domain-containing protein	N/A
eggNOG-mapper	UHGV-0032406_88	717231.Flexsi_2302	129.0	1.1e-29	Ftsk_gamma	N/A
PADLOC	UHGV-0032406_88	SspH_00004	98.1	8.5e-29	SspH	SSP
Pfam	UHGV-0032406_88	PF01580	N/A	N/A	FtsK/SpoIIIE family	FtsK_SpoIIIE
COG	UHGV-0032406_88	COG1674	N/A	N/A	DNA segregation ATPase FtsK/SpoIIIE or related protein	N/A
eggNOG-mapper	UHGV-0032406_92	592031.GCWU000322_00057	70.1	0.0000000000117	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0032406	Yes	54,158	34	100	1
UHGV-0025896	No	54,158	34	100	1