vOTU vOTU-006769

vOTU: vOTU-006769

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-006769
Number of genomes	2
Taxonomy (ICTV)	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola plebeius_A
Taxonomy (UHGV)	vFAM-00010 → vSUBFAM-00004 → vGENUS-00006 → vSUBGEN-38731 → vOTU-006769
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Blautia_A
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0116092
Biosample ID	SAMEA4431931
Genome length (bp)	44,138 bps
CheckV completeness	100.00% (Complete)
CDS count	69
CDS density	91.21%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Blautia_A	Total connections	1138	Host agreement	87.08
PHIST-predicted host lineage	Bacteria → Bacteroidota → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola plebeius_A	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0116092_1	K07474	83.5	5.3e-24	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0116092_1	phrog_51	87.0	1.6e-25	terminase small subunit	head and packaging
UniRef90	UHGV-0116092_1	UniRef90_A0A173R907	84.0	4.95e-18	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0116092_1	33035.JPJF01000106_gene3136	110.0	2.25e-26	Terminase small subunit	N/A
Pfam	UHGV-0116092_1	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0116092_1	COG1783	N/A	N/A	Phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0116092_2	411459.RUMOBE_01385	52.4	0.000000182	N/A	N/A
AcrCatalog	UHGV-0116092_2	cluster_11670	39.7	0.000000543	NA	N/A
PHROG	UHGV-0116092_4	phrog_10678	44.7	0.0000000000028	N/A	unknown function
eggNOG-mapper	UHGV-0116092_6	476272.RUMHYD_03348	60.8	0.000000000822	N/A	N/A
structural_annotation	UHGV-0116092_9	PF06107,COG4481	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_10	phrog_20593	49.5	0.000000000000029	N/A	unknown function
structural_annotation	UHGV-0116092_10	PF07870,TIGR02501	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0116092_11	cluster_11670	44.3	0.0000000111	NA	N/A
UniRef90	UHGV-0116092_14	UniRef90_A0A6L6XDH6	110.0	8.39e-29	N/A	N/A
structural_annotation	UHGV-0116092_16	NF041070	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_17	phrog_17690	131.1	3.8e-39	N/A	unknown function
eggNOG-mapper	UHGV-0116092_17	476272.RUMHYD_03925	168.0	0	N/A	N/A
KOfam	UHGV-0116092_19	K15255	248.0	0	PIF1; ATP-dependent DNA helicase PIF1 [EC:5.6.2.3]	N/A
PHROG	UHGV-0116092_19	phrog_325	260.8	0	Dda-like helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116092_19	UniRef90_A0A2V2D011	868.0	0	AAA domain-containing protein	N/A
eggNOG-mapper	UHGV-0116092_19	1504823.CCMM01000005_gene215	267.0	0	Caulimovirus viroplasmin	N/A
PADLOC	UHGV-0116092_19	cluster10	54.8	1.5e-18	RecD_0_IVD	CRISPR-CAS
Pfam	UHGV-0116092_19	PF05970	N/A	N/A	PIF1-like helicase	PIF1
COG	UHGV-0116092_19	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
PHROG	UHGV-0116092_20	phrog_8841	491.9	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116092_20	UniRef90_A0A3A6GQS5	1275.0	0	N/A	N/A
eggNOG-mapper	UHGV-0116092_20	411460.RUMTOR_02070	531.0	0	N/A	N/A
Pfam	UHGV-0116092_20	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0116092_20	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0116092_20	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116092_20	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0116092_21	K02316	78.1	1.3e-22	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0116092_21	phrog_11992	133.0	2.4e-39	N/A	unknown function
UniRef90	UHGV-0116092_21	UniRef90_A0A3A6GSV7	312.0	0	DNA primase	N/A
eggNOG-mapper	UHGV-0116092_21	411460.RUMTOR_02069	127.0	5.22e-35	CHC2 zinc finger	N/A
PADLOC	UHGV-0116092_21	drt-UG29	47.6	0.00000000000015	DRT	DRT
Pfam	UHGV-0116092_21	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0116092_21	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0116092_21	PF01807,PF00401	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_22	phrog_3490	157.4	0	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116092_22	UniRef90_R9KEE1	261.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0116092_22	1256908.HMPREF0373_00660	266.0	0	N/A	N/A
Pfam	UHGV-0116092_22	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-0116092_22	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_23	phrog_18107	253.6	0	N/A	unknown function
eggNOG-mapper	UHGV-0116092_23	1256908.HMPREF0373_00659	233.0	0	N/A	N/A
structural_annotation	UHGV-0116092_23	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_24	phrog_2872	165.0	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0116092_24	UniRef90_UPI0015715A02	264.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0116092_24	1256908.HMPREF0373_00658	233.0	0	AAA domain	N/A
structural_annotation	UHGV-0116092_24	TIGR01618	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116092_25	UniRef90_R6RDX0	79.0	5.26e-18	Arginyl-tRNA synthetase	N/A
structural_annotation	UHGV-0116092_26	NF001645	N/A	N/A	N/A	N/A
AcrCatalog	UHGV-0116092_30	cluster_17974	61.2	3.73e-16	NA	N/A
PHROG	UHGV-0116092_31	phrog_6058	53.3	0.000000000000002	N/A	unknown function
UniRef90	UHGV-0116092_31	UniRef90_A0A2V1JQ38	68.2	0.000000000000692	Glycogen synthase	N/A
eggNOG-mapper	UHGV-0116092_31	742733.HMPREF9469_05094	73.2	0.00000000000000125	N/A	N/A
PHROG	UHGV-0116092_32	phrog_463	202.1	0	anti-repressor	transcription regulation
UniRef90	UHGV-0116092_32	UniRef90_A0A3A6GZT3	362.0	0	Phage repressor protein	N/A
eggNOG-mapper	UHGV-0116092_32	411490.ANACAC_00813	206.0	0	BRO family, N-terminal domain	N/A
Pfam	UHGV-0116092_32	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
Pfam	UHGV-0116092_32	PF10552	N/A	N/A	ORF6C domain	ORF6C
COG	UHGV-0116092_32	COG3617	N/A	N/A	Prophage antirepressor	N/A
structural_annotation	UHGV-0116092_32	PF10552,PF02498,TIGR02681,COG3617	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116092_33	PF13601,TIGR04176	N/A	N/A	N/A	N/A
KOfam	UHGV-0116092_37	K18830	43.4	0.000000000004	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0116092_37	phrog_4	42.5	0.000000000014	transcriptional repressor	transcription regulation
UniRef90	UHGV-0116092_37	UniRef90_A0A2V2D6D5	166.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0116092_37	1235790.C805_00012	103.0	6.11e-27	Helix-turn-helix domain	N/A
Pfam	UHGV-0116092_37	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0116092_37	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0116092_37	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0116092_38	UniRef90_A0A3A6GQZ1	174.0	0	Zinc ribbon domain-containing protein	N/A
COG	UHGV-0116092_38	COG2314	N/A	N/A	N/A	N/A
KOfam	UHGV-0116092_39	K14059	100.0	3.8e-29	int; integrase	N/A
PHROG	UHGV-0116092_39	phrog_1	125.4	5.9e-37	integrase	integration and excision
UniRef90	UHGV-0116092_39	UniRef90_A0A6L8SXX0	736.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0116092_39	1235792.C808_05256	356.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0116092_39	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0116092_39	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0116092_39	PF00589,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_40	phrog_9589	70.4	2.6e-20	endolysin	lysis
UniRef90	UHGV-0116092_40	UniRef90_A0A6N9LGV5	473.0	0	CHAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0116092_40	1123075.AUDP01000020_gene1533	328.0	0	pathogenesis	N/A
Pfam	UHGV-0116092_40	PF05257	N/A	N/A	CHAP domain	CHAP
COG	UHGV-0116092_40	COG3942	N/A	N/A	Surface antigen	N/A
structural_annotation	UHGV-0116092_40	PF08230,PF19087	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116092_41	NF040910	N/A	N/A	N/A	N/A
KOfam	UHGV-0116092_43	K19721	117.7	3.5e-35	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	N/A
PHROG	UHGV-0116092_43	phrog_819	134.8	9.20653e-43	tail protein	tail
UniRef90	UHGV-0116092_43	UniRef90_A0A416SLH3	1129.0	0	Collagen-like protein	N/A
eggNOG-mapper	UHGV-0116092_43	1519439.JPJG01000060_gene1894	117.0	1.28e-26	N/A	N/A
Pfam	UHGV-0116092_43	PF01391	N/A	N/A	Collagen triple helix repeat (20 copies)	Collagen
Pfam	UHGV-0116092_43	PF19789	N/A	N/A	N/A	DUF6273
COG	UHGV-0116092_43	COG3827	N/A	N/A	Cell pole-organizing protein PopZ	N/A
structural_annotation	UHGV-0116092_43	PF19789,PF16323,COG2033	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_44	phrog_18444	77.6	1e-22	N/A	unknown function
PHROG	UHGV-0116092_45	phrog_6616	537.2	0	tail protein	tail
UniRef90	UHGV-0116092_45	UniRef90_UPI001D07A50C	558.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0116092_45	33035.JPJF01000043_gene1002	226.0	0	N/A	N/A
structural_annotation	UHGV-0116092_45	PF05113,PF18432,NF033848,NF011735,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_46	phrog_1194	85.1	6.1e-25	N/A	unknown function
structural_annotation	UHGV-0116092_46	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_47	phrog_1535	485.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0116092_47	UniRef90_A0A173R880	858.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0116092_47	476272.RUMHYD_01785	873.0	0	phage tail tape measure protein	N/A
COG	UHGV-0116092_47	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116092_47	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_48	phrog_706	139.3	2.50006e-41	N/A	unknown function
UniRef90	UHGV-0116092_48	UniRef90_A0A173TZF2	209.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0116092_48	411459.RUMOBE_01383	343.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0116092_48	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0116092_48	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_49	phrog_11299	67.1	3e-19	N/A	unknown function
structural_annotation	UHGV-0116092_49	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_50	phrog_3099	131.2	6.5e-39	N/A	unknown function
eggNOG-mapper	UHGV-0116092_50	411902.CLOBOL_00129	170.0	0	N/A	N/A
structural_annotation	UHGV-0116092_50	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_51	phrog_3266	89.3	3.4e-26	tail completion	connector
eggNOG-mapper	UHGV-0116092_51	476272.RUMHYD_01781	155.0	0	N/A	N/A
structural_annotation	UHGV-0116092_51	PF12691	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_52	phrog_556	55.5	4.3e-16	minor head protein	head and packaging
UniRef90	UHGV-0116092_52	UniRef90_UPI000E4989EB	325.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0116092_52	476272.RUMHYD_01780	157.0	0	N/A	N/A
Pfam	UHGV-0116092_52	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0116092_52	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_53	phrog_3366	94.8	8.7e-28	N/A	unknown function
eggNOG-mapper	UHGV-0116092_53	476272.RUMHYD_01779	155.0	0	N/A	N/A
structural_annotation	UHGV-0116092_53	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_54	phrog_1129	76.0	3.4e-22	holin	lysis
UniRef90	UHGV-0116092_54	UniRef90_A0A395X7B2	174.0	0	Enolase	N/A
eggNOG-mapper	UHGV-0116092_54	411461.DORFOR_00721	113.0	1.02e-31	N/A	N/A
Pfam	UHGV-0116092_54	PF16079	N/A	N/A	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
structural_annotation	UHGV-0116092_54	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_56	phrog_541	95.8	2.6e-28	head-tail adaptor	connector
eggNOG-mapper	UHGV-0116092_56	476272.RUMHYD_01778	112.0	1.77e-29	N/A	N/A
PHROG	UHGV-0116092_57	phrog_544	165.1	0	major head protein	head and packaging
UniRef90	UHGV-0116092_57	UniRef90_A0A395X7A1	719.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0116092_57	1232453.BAIF02000011_gene3359	392.0	0	N/A	N/A
Pfam	UHGV-0116092_57	PF18316	N/A	N/A	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
structural_annotation	UHGV-0116092_57	PF03864,PF18316,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_58	phrog_194	64.3	2.4e-18	head scaffolding protein	head and packaging
UniRef90	UHGV-0116092_58	UniRef90_UPI001D14C9C8	192.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0116092_58	476272.RUMHYD_01775	195.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-0116092_58	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
PHROG	UHGV-0116092_59	phrog_28802	226.1	0	N/A	unknown function
eggNOG-mapper	UHGV-0116092_59	476272.RUMHYD_01772	197.0	0	N/A	N/A
PHROG	UHGV-0116092_60	phrog_20016	206.5	0	N/A	unknown function
UniRef90	UHGV-0116092_60	UniRef90_A0A285PT46	168.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0116092_60	397290.C810_05214	187.0	0	N/A	N/A
structural_annotation	UHGV-0116092_60	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_61	phrog_16490	183.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0116092_61	397290.C810_01328	170.0	0	N/A	N/A
PHROG	UHGV-0116092_62	phrog_22984	94.8	5.2e-28	N/A	unknown function
PHROG	UHGV-0116092_63	phrog_21718	131.8	3.2e-39	N/A	unknown function
eggNOG-mapper	UHGV-0116092_63	397290.C810_05210	130.0	3.42e-36	N/A	N/A
UniRef90	UHGV-0116092_64	UniRef90_A0A395X7A4	179.0	0	CTP synthase	N/A
eggNOG-mapper	UHGV-0116092_64	476272.RUMHYD_01766	121.0	1.52e-34	N/A	N/A
PHROG	UHGV-0116092_65	phrog_3754	113.9	1.1e-33	N/A	unknown function
eggNOG-mapper	UHGV-0116092_65	476272.RUMHYD_01764	183.0	0	N/A	N/A
PHROG	UHGV-0116092_66	phrog_581	272.7	0	minor head protein	head and packaging
UniRef90	UHGV-0116092_66	UniRef90_A0A395X791	765.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0116092_66	33035.JPJF01000106_gene3134	427.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0116092_66	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0116092_66	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0116092_66	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0116092_67	phrog_533	270.1	0	portal protein	head and packaging
UniRef90	UHGV-0116092_67	UniRef90_A0A1C6CDM8	669.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0116092_67	33035.JPJF01000106_gene3135	519.0	0	phage minor capsid protein	N/A
structural_annotation	UHGV-0116092_67	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0116092_68	411473.RUMCAL_02525	142.0	7.86128e-43	N/A	N/A
KOfam	UHGV-0116092_69	K06909	414.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0116092_69	phrog_3717	160.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-0116092_69	UniRef90_A0A412EKJ9	769.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0116092_69	33035.JPJF01000106_gene3136	568.0	0	Terminase small subunit	N/A
Pfam	UHGV-0116092_69	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0116092_69	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0116092_69	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0116092_69	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0116092_69	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0116092	Yes	44,138	41	100	1
UHGV-1382274	No	44,138	41	100	1