vOTU vOTU-006904

vOTU: vOTU-006904

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-006904
Number of genomes	26
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00309 → vGENUS-16607 → vSUBGEN-30102 → vOTU-006904
Host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → Merdicola → Merdicola sp018371855
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0356105
Biosample ID	SAMEA4813817
Genome length (bp)	37,121 bps
CheckV completeness	100.00% (Complete)
CDS count	61
CDS density	93.50%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Bacteroidota	Total connections	25	Host agreement	60
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → TANB77 → CAG-508 → Merdicola → Merdicola sp018371855	Total connections	27	Host agreement	85.19

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0356105_1	phrog_1535	262.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0356105_1	UniRef90_A0A174SV65	452.0	0	Phage-like protein	N/A
eggNOG-mapper	UHGV-0356105_1	33035.JPJF01000093_gene2243	469.0	0	phage tail tape measure protein	N/A
COG	UHGV-0356105_1	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0356105_1	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
UniRef90	UHGV-0356105_2	UniRef90_R7F982	103.0	2.06e-28	Conserved domain protein	N/A
eggNOG-mapper	UHGV-0356105_2	1540257.JQMW01000013_gene732	58.2	0.0000000000498	Mu-like prophage protein Com	N/A
structural_annotation	UHGV-0356105_2	PF10122,COG4416	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_3	phrog_8355	91.2	4.2e-27	N/A	unknown function
UniRef90	UHGV-0356105_3	UniRef90_UPI001D0309B6	99.8	4.34e-25	bacteriophage Gp15 family protein	N/A
eggNOG-mapper	UHGV-0356105_3	86416.Clopa_0585	83.6	1.71e-19	N/A	N/A
Pfam	UHGV-0356105_3	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-0356105_4	phrog_8300	61.2	1.7e-17	N/A	unknown function
eggNOG-mapper	UHGV-0356105_4	394503.Ccel_3037	61.6	0.0000000000545	N/A	N/A
structural_annotation	UHGV-0356105_4	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_5	phrog_820	115.5	2.5e-34	major tail protein	tail
eggNOG-mapper	UHGV-0356105_5	1282664.H354_06691	198.0	0	N/A	N/A
structural_annotation	UHGV-0356105_5	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_6	phrog_2595	68.3	1.1e-19	head-tail connector protein	connector
UniRef90	UHGV-0356105_6	UniRef90_UPI001C8D62C5	75.1	0.00000000000000953	minor capsid protein	N/A
eggNOG-mapper	UHGV-0356105_6	1151292.QEW_2427	73.9	0.00000000000000461	N/A	N/A
Pfam	UHGV-0356105_6	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0356105_6	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_7	phrog_556	40.9	0.000000000033	minor head protein	head and packaging
eggNOG-mapper	UHGV-0356105_7	742740.HMPREF9474_03509	95.1	1.39e-23	N/A	N/A
PHROG	UHGV-0356105_8	phrog_8710	109.6	1.9e-32	N/A	unknown function
eggNOG-mapper	UHGV-0356105_8	1151292.QEW_2430	81.3	1.88e-18	N/A	N/A
structural_annotation	UHGV-0356105_8	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_9	phrog_541	63.2	4.3e-18	head-tail adaptor	connector
eggNOG-mapper	UHGV-0356105_9	552396.HMPREF0863_01637	61.2	0.000000000227	N/A	N/A
PHROG	UHGV-0356105_11	phrog_422	288.3	0	major head protein	head and packaging
UniRef90	UHGV-0356105_11	UniRef90_R7FBE8	622.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0356105_11	663278.Ethha_1589	415.0	0	N/A	N/A
structural_annotation	UHGV-0356105_11	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_13	phrog_29156	88.2	8.1e-26	N/A	unknown function
PHROG	UHGV-0356105_14	phrog_581	171.9	0	minor head protein	head and packaging
UniRef90	UHGV-0356105_14	UniRef90_R5A5Z0	210.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0356105_14	33035.JPJF01000093_gene2255	227.0	0	N/A	N/A
Pfam	UHGV-0356105_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0356105_14	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
PHROG	UHGV-0356105_15	phrog_581	49.0	0.000000000000094	minor head protein	head and packaging
UniRef90	UHGV-0356105_15	UniRef90_R7F8T2	227.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0356105_15	1294142.CINTURNW_1025	78.6	0.00000000000000198	N/A	N/A
COG	UHGV-0356105_15	COG5529	N/A	N/A	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	N/A
PHROG	UHGV-0356105_16	phrog_533	232.2	0	portal protein	head and packaging
UniRef90	UHGV-0356105_16	UniRef90_R7FBF4	978.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0356105_16	1294142.CINTURNW_1024	457.0	0	N/A	N/A
structural_annotation	UHGV-0356105_16	PF05133,MF_04120,TIGR01542,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_17	phrog_872	107.7	1.1e-31	N/A	unknown function
UniRef90	UHGV-0356105_17	UniRef90_A0A417PRP3	143.0	3.53996e-41	N/A	N/A
eggNOG-mapper	UHGV-0356105_17	1235800.C819_00487	135.0	8.24e-40	N/A	N/A
Pfam	UHGV-0356105_17	PF11195	N/A	N/A	N/A	DUF2829
dbAPIS	UHGV-0356105_17	APIS029	N/A	N/A	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	N/A
structural_annotation	UHGV-0356105_17	PF11195	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_18	phrog_2	71.4	1.9e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0356105_18	UniRef90_R7F708	937.0	0	Phage terminase large subunit PBSX family	N/A
eggNOG-mapper	UHGV-0356105_18	1282664.H354_06621	516.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0356105_18	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0356105_18	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_19	phrog_2538	93.0	2.6e-27	terminase small subunit	head and packaging
UniRef90	UHGV-0356105_19	UniRef90_R7F877	234.0	0	HTH_Tnp_1_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-0356105_19	279808.SH2359	63.5	0.000000000033	N/A	N/A
Pfam	UHGV-0356105_19	PF13022	N/A	N/A	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
PHROG	UHGV-0356105_21	phrog_36	48.2	0.00000000000023	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0356105_21	PF07374,NF008895	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_22	phrog_1238	54.9	0.0000000000000013	phosphoheptose isomerase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0356105_22	UniRef90_A0A7Z0EIA5	84.0	2.78e-18	Rhodanese-related sulfurtransferase	N/A
eggNOG-mapper	UHGV-0356105_22	1120936.KB907208_gene1181	87.8	1.37e-20	N/A	N/A
structural_annotation	UHGV-0356105_22	TIGR01689	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_27	phrog_374	42.1	0.000000000017	HNH endonuclease	DNA, RNA and nucleotide metabolism
COG	UHGV-0356105_27	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
eggNOG-mapper	UHGV-0356105_28	397290.C810_01505	106.0	6.26e-29	N/A	N/A
PHROG	UHGV-0356105_31	phrog_757	72.5	4.6e-21	DNA methyltransferase	other
eggNOG-mapper	UHGV-0356105_31	658655.HMPREF0988_00884	266.0	0	N/A	N/A
AcrCatalog	UHGV-0356105_31	cluster_47493	189.0	0	NA	N/A
structural_annotation	UHGV-0356105_31	PF00145,MF_00341,COG0270	N/A	N/A	N/A	N/A
KOfam	UHGV-0356105_35	K18959	204.7	0	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	N/A
PHROG	UHGV-0356105_35	phrog_16	200.6	0	DNA helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356105_35	UniRef90_R7FBH8	461.0	0	Helicase C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0356105_35	1449050.JNLE01000003_gene3908	367.0	0	Type III restriction protein res subunit	N/A
PADLOC	UHGV-0356105_35	mREase_IV_00004	51.8	0.0000000000000056	Type IV methyl-directed restriction enzyme	RM
Pfam	UHGV-0356105_35	PF04851	N/A	N/A	Type III restriction enzyme, res subunit	ResIII
Pfam	UHGV-0356105_35	PF00271	N/A	N/A	Helicase conserved C-terminal domain	Helicase_C
COG	UHGV-0356105_35	COG1061	N/A	N/A	Superfamily II DNA or RNA helicase	N/A
structural_annotation	UHGV-0356105_35	PF04851,PF16203,MF_01489,TIGR00603,COG1061	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0356105_36	1449050.JNLE01000003_gene3909	68.2	0.00000000000103	Recombination protein U	N/A
Pfam	UHGV-0356105_36	PF01870	N/A	N/A	Archaeal holliday junction resolvase (hjc)	Hjc
structural_annotation	UHGV-0356105_36	PF03838,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_39	phrog_8841	478.7	0	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356105_39	UniRef90_UPI0006936C9D	430.0	0	N/A	N/A
eggNOG-mapper	UHGV-0356105_39	903814.ELI_3221	354.0	0	N/A	N/A
Pfam	UHGV-0356105_39	PF06048	N/A	N/A	N/A	DUF927
Pfam	UHGV-0356105_39	PF18662	N/A	N/A	Cch helix turn helix domain	HTH_56
COG	UHGV-0356105_39	COG5519	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356105_39	PF06048,PF18662,MF_00016,NF011296,COG5519	N/A	N/A	N/A	N/A
KOfam	UHGV-0356105_40	K02316	81.6	1.1e-23	dnaG; DNA primase [EC:2.7.7.101]	N/A
PHROG	UHGV-0356105_40	phrog_11992	89.2	2e-26	N/A	unknown function
UniRef90	UHGV-0356105_40	UniRef90_R7F6U7	363.0	0	DNA primase (Bacterial type)	N/A
eggNOG-mapper	UHGV-0356105_40	1123009.AUID01000001_gene1033	82.8	5.42e-16	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	N/A
PADLOC	UHGV-0356105_40	drt-cluster192	71.2	2.7e-20	DRT	DRT
Pfam	UHGV-0356105_40	PF01807	N/A	N/A	CHC2 zinc finger	zf-CHC2
COG	UHGV-0356105_40	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0356105_40	PF01807	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_41	phrog_18107	115.5	4.7e-34	N/A	unknown function
UniRef90	UHGV-0356105_41	UniRef90_R7F806	394.0	0	PF05037 family protein	N/A
eggNOG-mapper	UHGV-0356105_41	1232453.BAIF02000010_gene3338	104.0	2.91e-25	N/A	N/A
Pfam	UHGV-0356105_41	PF05037	N/A	N/A	N/A	DUF669
structural_annotation	UHGV-0356105_41	PF05037	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_43	phrog_2872	241.2	0	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356105_43	UniRef90_A0A0M2NNJ8	260.0	0	N/A	N/A
eggNOG-mapper	UHGV-0356105_43	1449050.JNLE01000005_gene3946	254.0	0	AAA domain	N/A
Pfam	UHGV-0356105_43	PF13479	N/A	N/A	AAA domain	AAA_24
structural_annotation	UHGV-0356105_43	PF13479,MF_00350,TIGR01618,COG0468	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_44	phrog_253	118.1	7.1e-35	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0356105_44	UniRef90_UPI001ADD97E1	146.0	4.45052e-42	siphovirus Gp157 family protein	N/A
eggNOG-mapper	UHGV-0356105_44	397290.C810_05162	115.0	9.86e-31	Siphovirus Gp157	N/A
Pfam	UHGV-0356105_44	PF05565	N/A	N/A	Siphovirus Gp157	Sipho_Gp157
UniRef90	UHGV-0356105_46	UniRef90_R7F8M8	172.0	0	LysM domain-containing protein	N/A
eggNOG-mapper	UHGV-0356105_46	720554.Clocl_1747	53.1	0.0000000604	Lysin motif	N/A
Pfam	UHGV-0356105_46	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0356105_46	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0356105_46	PF01476,MF_02014,NF010723,COG1388	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356105_47	PF21531,NF033787	N/A	N/A	N/A	N/A
UniRef90	UHGV-0356105_48	UniRef90_A0A127EGR4	83.6	1.26e-19	N/A	N/A
eggNOG-mapper	UHGV-0356105_48	1215915.BN193_09250	63.5	0.00000000000206	N/A	N/A
Pfam	UHGV-0356105_48	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-0356105_48	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-0356105_48	PF05339,MF_00535,NF002773,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-0356105_49	K01356	133.3	3.2e-39	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-0356105_49	phrog_4	127.9	9.7e-38	transcriptional repressor	transcription regulation
UniRef90	UHGV-0356105_49	UniRef90_R7F6V6	431.0	0	LexA repressor	N/A
eggNOG-mapper	UHGV-0356105_49	562981.HMPREF0428_01863	150.0	1.19951e-42	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0356105_49	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-0356105_49	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
COG	UHGV-0356105_49	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-0356105_49	PF00717,PF01381,MF_00015,TIGR00498,COG1974	N/A	N/A	N/A	N/A
Pfam	UHGV-0356105_50	PF14018	N/A	N/A	N/A	DUF4234
COG	UHGV-0356105_50	COG3793	N/A	N/A	Tellurite resistance protein TerB	N/A
KOfam	UHGV-0356105_51	K14059	175.9	0	int; integrase	N/A
PHROG	UHGV-0356105_51	phrog_1	151.4	8.40779e-45	integrase	integration and excision
UniRef90	UHGV-0356105_51	UniRef90_R7F8N3	815.0	0	Integrase	N/A
eggNOG-mapper	UHGV-0356105_51	935948.KE386495_gene1213	256.0	0	Phage integrase family	N/A
Pfam	UHGV-0356105_51	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0356105_51	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0356105_51	PF00589,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_52	phrog_18955	45.5	0.00000000000048	N/A	unknown function
UniRef90	UHGV-0356105_52	UniRef90_R7F968	931.0	0	Peptidoglycan-binding domain 1 protein	N/A
eggNOG-mapper	UHGV-0356105_52	1121422.AUMW01000009_gene3264	108.0	3.37e-24	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-0356105_52	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
Pfam	UHGV-0356105_52	PF08239	N/A	N/A	Bacterial SH3 domain	SH3_3
COG	UHGV-0356105_52	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-0356105_52	PF03412,PF08239,PF18341,NF040678,NF033920,COG4991,COG4990	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_54	phrog_24267	93.3	3.4e-27	N/A	unknown function
UniRef90	UHGV-0356105_54	UniRef90_R5LPM8	85.5	1.46e-18	Putative truncated prophage LambdaSa1 minor structural protein	N/A
eggNOG-mapper	UHGV-0356105_54	553973.CLOHYLEM_06931	117.0	4.18e-30	tail collar domain protein	N/A
COG	UHGV-0356105_54	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-0356105_54	COG4675	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0356105_55	PF00386,NF033147	N/A	N/A	N/A	N/A
UniRef90	UHGV-0356105_58	UniRef90_R7F6Y9	260.0	0	Phage tail fiber repeat-containing protein	N/A
COG	UHGV-0356105_58	COG0419	N/A	N/A	DNA repair exonuclease SbcCD ATPase subunit	N/A
PHROG	UHGV-0356105_59	phrog_6616	159.8	0	tail protein	tail
UniRef90	UHGV-0356105_59	UniRef90_R7F857	1390.0	0	Phage minor structural protein	N/A
eggNOG-mapper	UHGV-0356105_59	33035.JPJF01000043_gene1002	114.0	2.21e-23	N/A	N/A
PHROG	UHGV-0356105_60	phrog_1194	118.5	3.3e-35	N/A	unknown function
UniRef90	UHGV-0356105_60	UniRef90_R7F8R7	244.0	0	Putative phage protein	N/A
eggNOG-mapper	UHGV-0356105_60	1414720.CBYM010000002_gene561	115.0	5.95e-32	N/A	N/A
Pfam	UHGV-0356105_60	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-0356105_60	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-0356105_61	phrog_58	152.3	2.8026e-45	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0356105_61	33035.JPJF01000093_gene2243	148.0	2.54e-35	phage tail tape measure protein	N/A
Pfam	UHGV-0356105_61	PF05017	N/A	N/A	TMP repeat	TMP
COG	UHGV-0356105_61	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0356105	Yes	37,121	27	100	1
UHGV-1374033	No	34,503	27	100	1
UHGV-0088602	No	42,153	27	100	1
UHGV-2133438	No	42,153	27	100	1
UHGV-0863516	No	37,178	27	100	1
UHGV-0141589	No	34,380	27	100	1
UHGV-0100529	No	35,061	27	94	1
UHGV-1523533	No	34,407	27	93	1
UHGV-1540811	No	34,265	27	92	1
UHGV-0053436	No	34,119	27	92	1
UHGV-1526673	No	30,190	27	81	1
UHGV-1523929	No	28,324	28	76	1
UHGV-1542091	No	25,980	28	70	1
UHGV-2175536	No	25,747	28	69	1
UHGV-1539488	No	24,541	28	66	1
UHGV-1543536	No	24,226	28	65	1
UHGV-1435162	No	19,881	28	54	1
UHGV-1396668	No	19,255	28	52	1
UHGV-1434798	No	18,718	28	50	1
UHGV-1903355	No	16,524	26	45	1
UHGV-1821302	No	15,534	28	42	1
UHGV-1692205	No	14,553	29	39	1
UHGV-1731432	No	13,420	29	36	1
UHGV-1800230	No	12,955	28	35	1
UHGV-1834570	No	12,916	29	35	1
UHGV-0061866	No	11,635	29	32	1