vOTU vOTU-006927

vOTU: vOTU-006927

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-006927
Number of genomes	3
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00190 → vSUBGEN-43133 → vOTU-006927
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0021800
Biosample ID	SAMEA4766014
Genome length (bp)	40,715 bps
CheckV completeness	100.00% (Complete)
CDS count	71
CDS density	91.31%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	649	Host agreement	97.69
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0021800_1	phrog_4433	162.8	0	N/A	unknown function
eggNOG-mapper	UHGV-0021800_1	439375.Oant_2324	92.4	1.6e-19	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0021800_1	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0021800_1	NF000318	N/A	N/A	N/A	N/A
KOfam	UHGV-0021800_2	K07741	144.6	1.3004e-42	antB; anti-repressor protein	N/A
PHROG	UHGV-0021800_2	phrog_63	115.8	4.2e-34	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0021800_2	UniRef90_A0A6N7TLD1	283.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0021800_2	1230342.CTM_16892	223.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0021800_2	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0021800_2	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0021800_2	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0021800_2	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021800_3	UniRef90_A0A1C7FQD9	82.4	3.15e-19	Transcriptional regulator	N/A
Pfam	UHGV-0021800_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0021800_3	PF13560,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_4	phrog_8	46.2	0.00000000000098	transcriptional regulator	transcription regulation
UniRef90	UHGV-0021800_4	UniRef90_UPI001966F1BB	84.3	1.87e-18	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0021800_4	1226322.HMPREF1545_00148	82.0	1.36e-18	Transcriptional	N/A
Pfam	UHGV-0021800_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021800_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0021800_5	PF09202,MF_01819,NF041230,COG1321	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_8	phrog_888	62.5	8.9e-34	N/A	unknown function
UniRef90	UHGV-0021800_8	UniRef90_A0A6N7TMA2	422.0	0	SHOCT domain-containing protein	N/A
eggNOG-mapper	UHGV-0021800_8	1151292.QEW_1347	81.6	0.00000000000000106	Short C-terminal domain	N/A
Pfam	UHGV-0021800_8	PF14471	N/A	N/A	N/A	DUF4428
Pfam	UHGV-0021800_8	PF09851	N/A	N/A	Short C-terminal domain	SHOCT
structural_annotation	UHGV-0021800_8	PF15947,PF14471	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021800_11	UniRef90_A0A6N7TLT0	206.0	0	Helix-turn-helix domain-containing protein	N/A
Pfam	UHGV-0021800_11	PF13560	N/A	N/A	Helix-turn-helix domain	HTH_31
COG	UHGV-0021800_11	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0021800_11	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0021800_12	K14059	137.2	1.90001e-40	int; integrase	N/A
PHROG	UHGV-0021800_12	phrog_1	163.5	0	integrase	integration and excision
UniRef90	UHGV-0021800_12	UniRef90_A0A6N7TNQ4	714.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0021800_12	411471.SUBVAR_05137	263.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0021800_12	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0021800_12	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0021800_12	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_14	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_15	phrog_20016	205.2	0	N/A	unknown function
UniRef90	UHGV-0021800_15	UniRef90_A0A285PT46	214.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0021800_15	1226322.HMPREF1545_00077	182.0	0	N/A	N/A
structural_annotation	UHGV-0021800_15	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_17	phrog_16490	194.5	0	N/A	unknown function
eggNOG-mapper	UHGV-0021800_17	397290.C810_01328	138.0	4.26e-36	N/A	N/A
PHROG	UHGV-0021800_18	phrog_22984	75.3	6.6e-22	N/A	unknown function
PHROG	UHGV-0021800_19	phrog_21718	86.7	2.8e-25	N/A	unknown function
eggNOG-mapper	UHGV-0021800_19	397290.C810_05210	78.6	3.18e-16	N/A	N/A
PHROG	UHGV-0021800_20	phrog_3754	101.3	8.1e-30	N/A	unknown function
eggNOG-mapper	UHGV-0021800_20	476272.RUMHYD_01764	154.0	0	N/A	N/A
KOfam	UHGV-0021800_22	K23779	57.1	4.1e-16	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0021800_22	phrog_1373	43.9	0.0000000000028	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-0021800_22	944479.JQLX01000018_gene150	53.9	0.00000118	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0021800_22	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0021800_22	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-0021800_22	PF01381,TIGR03070,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_24	phrog_15303	75.3	6.2e-22	N/A	unknown function
KOfam	UHGV-0021800_26	K07273	177.8	0	acm; lysozyme	N/A
PHROG	UHGV-0021800_26	phrog_291	134.3	9.3e-40	endolysin	lysis
UniRef90	UHGV-0021800_26	UniRef90_A0A564U0D3	397.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-0021800_26	718252.FP2_04890	230.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0021800_26	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0021800_26	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0021800_26	PF01183,NF007404,COG3757	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021800_27	UniRef90_UPI001D07AB37	79.3	1.7e-18	XkdX family protein	N/A
eggNOG-mapper	UHGV-0021800_27	718252.FP2_16990	78.2	8.16e-19	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-0021800_27	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
structural_annotation	UHGV-0021800_27	PF09693	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_29	phrog_10993	209.4	0	Hoc-like head decoration	head and packaging
UniRef90	UHGV-0021800_29	UniRef90_A0A350TI55	338.0	0	N/A	N/A
eggNOG-mapper	UHGV-0021800_29	718252.FP2_16970	318.0	0	N/A	N/A
Pfam	UHGV-0021800_29	PF19789	N/A	N/A	N/A	DUF6273
structural_annotation	UHGV-0021800_29	PF19789,PF18911	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021800_31	1235792.C808_00094	86.3	2.92e-18	phage tail	N/A
COG	UHGV-0021800_31	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0021800_31	PF05709,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_32	phrog_3558	275.4	0	tail protein	tail
UniRef90	UHGV-0021800_32	UniRef90_UPI001C01D15B	682.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0021800_32	1120933.ATUY01000002_gene164	156.0	9.66e-38	Prophage endopeptidase tail	N/A
Pfam	UHGV-0021800_32	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0021800_32	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0021800_32	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0021800_32	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_33	phrog_28775	118.9	3.6e-35	tail length tape measure protein	tail
UniRef90	UHGV-0021800_33	UniRef90_A0A844DDD5	643.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0021800_33	1492737.FEM08_12070	140.0	6.78e-32	tape measure	N/A
Pfam	UHGV-0021800_33	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0021800_33	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0021800_33	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0021800_33	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_36	phrog_885	59.2	4.6e-17	major tail protein	tail
eggNOG-mapper	UHGV-0021800_36	1111121.HMPREF1247_0789	99.0	3.41e-23	N/A	N/A
structural_annotation	UHGV-0021800_36	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_37	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_38	phrog_17977	43.5	0.0000000000043	N/A	unknown function
UniRef90	UHGV-0021800_38	UniRef90_A0A844DHJ8	128.0	7.41e-36	Phage head closure protein	N/A
structural_annotation	UHGV-0021800_38	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_40	phrog_544	155.2	0	major head protein	head and packaging
UniRef90	UHGV-0021800_40	UniRef90_R0BKA1	456.0	0	S-l_SbsC_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0021800_40	476272.RUMHYD_01776	338.0	0	N/A	N/A
structural_annotation	UHGV-0021800_40	PF03864,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_41	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_43	phrog_5	43.1	0.000000000008	tail completion or Neck1 protein	connector
UniRef90	UHGV-0021800_43	UniRef90_A0A6N7TNP6	275.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0021800_43	268407.PWYN_03010	68.9	0.000000000000827	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0021800_43	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0021800_43	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_45	phrog_8680	202.8	0	N/A	unknown function
UniRef90	UHGV-0021800_45	UniRef90_A0A844D688	437.0	0	N/A	N/A
eggNOG-mapper	UHGV-0021800_45	1423790.BN53_04265	174.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
Pfam	UHGV-0021800_45	PF14386	N/A	N/A	N/A	DUF4417
COG	UHGV-0021800_45	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0021800_45	PF14386	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_48	phrog_2468	82.9	2.2e-24	head morphogenesis	head and packaging
UniRef90	UHGV-0021800_48	UniRef90_A0A6N7TLR7	603.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0021800_48	1504822.CCNO01000013_gene286	109.0	2.17e-23	cell adhesion	N/A
Pfam	UHGV-0021800_48	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0021800_48	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_48	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_50	phrog_64	123.7	5.2e-37	portal protein	head and packaging
UniRef90	UHGV-0021800_50	UniRef90_A0A6N7TNT3	501.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0021800_50	1423754.BALY01000011_gene289	77.4	0.00000000000231	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0021800_50	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0021800_50	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0021800_51	K06909	334.7	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0021800_51	phrog_3717	128.9	2.8e-38	terminase large subunit	head and packaging
UniRef90	UHGV-0021800_51	UniRef90_A0A1Y4ES07	495.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0021800_51	665956.HMPREF1032_02957	461.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0021800_51	PF16677	N/A	N/A	DNA-packaging protein gp3	GP3_package
Pfam	UHGV-0021800_51	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-0021800_51	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0021800_51	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0021800_51	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0021800_51	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_52	phrog_36	52.3	0.0000000000000093	transcriptional regulator	transcription regulation
structural_annotation	UHGV-0021800_52	PF07374,MF_00245,TIGR01636,COG2739	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_54	PF14354	N/A	N/A	N/A	N/A
KOfam	UHGV-0021800_55	K01160	60.0	6.6e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0021800_55	phrog_34	64.0	2.8e-18	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021800_55	UniRef90_A0A6N7TND6	217.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0021800_55	875454.BAEW01000002_gene491	134.0	5.15e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0021800_55	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0021800_55	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0021800_55	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_56	phrog_3136	116.5	9.9e-35	N/A	unknown function
UniRef90	UHGV-0021800_56	UniRef90_A0A6N7TMC2	161.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0021800_56	1235793.C809_02645	53.9	0.00000481	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0021800_56	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0021800_56	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_57	phrog_757	172.9	0	DNA methyltransferase	other
UniRef90	UHGV-0021800_57	UniRef90_UPI001C00B13F	439.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0021800_57	748224.HMPREF9436_03069	324.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
COG	UHGV-0021800_57	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-0021800_57	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_60	PF01775,MF_00273,NF001981,COG2157	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_61	PF11417	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_62	phrog_5968	114.5	7.7e-34	replisome organizer	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021800_62	UniRef90_UPI001C02E649	200.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0021800_62	718252.FP2_01000	199.0	0	N/A	N/A
Pfam	UHGV-0021800_62	PF09681	N/A	N/A	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
COG	UHGV-0021800_62	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0021800_62	PF09681,TIGR01714,TIGR01446,COG3935	N/A	N/A	N/A	N/A
KOfam	UHGV-0021800_63	K03111	136.9	2.1e-40	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0021800_63	phrog_44	139.6	1.70006e-41	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021800_63	UniRef90_D4K451	258.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0021800_63	718252.FP2_06770	258.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0021800_63	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0021800_63	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0021800_63	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0021800_63	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0021800_63	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_64	phrog_7838	117.4	9.4e-35	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021800_64	UniRef90_A0A8D9UGW3	170.0	0	DNA repair protein RAD52-like protein	N/A
eggNOG-mapper	UHGV-0021800_64	742767.HMPREF9456_02052	140.0	5.27e-39	N/A	N/A
structural_annotation	UHGV-0021800_64	PF04098,TIGR00607,COG4380	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_66	PF06718	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_68	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021800_70	PF10743,NF033787	N/A	N/A	N/A	N/A
PHROG	UHGV-0021800_71	phrog_27197	81.1	4.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0021800_71	394503.Ccel_3068	58.2	0.00000000618	regulation of DNA-templated transcription, elongation	N/A
COG	UHGV-0021800_71	COG5164	N/A	N/A	Transcription elongation factor SPT5	N/A
structural_annotation	UHGV-0021800_71	NF007410	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0021800	Yes	40,715	56	100	1
UHGV-0016524	No	40,715	56	100	1
UHGV-0030252	No	40,545	56	100	1