vOTU vOTU-007165

vOTU: vOTU-007165

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-007165
Number of genomes	8
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00229 → vSUBFAM-00674 → vGENUS-02005 → vSUBGEN-38570 → vOTU-007165
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0244472
Biosample ID	SAMN09217419
Genome length (bp)	46,296 bps
CheckV completeness	100.00% (Complete)
CDS count	76
CDS density	86.56%
tRNA count	3
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Gemmiger	Total connections	22	Host agreement	77.27
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0244472_3	PF21662,MF_00683,NF010673	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_6	phrog_1909	106.0	3.2e-31	N/A	unknown function
structural_annotation	UHGV-0244472_6	TIGR01651,COG4547	N/A	N/A	N/A	N/A
KOfam	UHGV-0244472_7	K09882	122.3	4.7e-36	cobS; cobaltochelatase CobS [EC:6.6.1.2]	N/A
PHROG	UHGV-0244472_7	phrog_249	176.3	0	porphyrin biosynthesis	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0244472_7	UniRef90_UPI0006961AD7	272.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0244472_7	402612.FP2177	187.0	0	AAA domain (dynein-related subfamily)	N/A
Pfam	UHGV-0244472_7	PF07728	N/A	N/A	AAA domain (dynein-related subfamily)	AAA_5
COG	UHGV-0244472_7	COG0714	N/A	N/A	MoxR-like ATPase	N/A
structural_annotation	UHGV-0244472_7	PF07728,MF_03121,TIGR02640,COG0714	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_11	phrog_244	72.9	5.4e-21	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244472_11	UniRef90_A0A841R0Q1	102.0	6.32e-26	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0244472_11	1410650.JHWL01000003_gene2849	104.0	2.2e-27	N/A	N/A
KOfam	UHGV-0244472_13	K02314	210.1	0	dnaB; replicative DNA helicase [EC:5.6.2.3]	N/A
PHROG	UHGV-0244472_13	phrog_19	225.0	0	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244472_13	UniRef90_A0A316NVS3	238.0	0	DNA helicase	N/A
eggNOG-mapper	UHGV-0244472_13	1203606.HMPREF1526_01325	149.0	1.79e-37	Participates in initiation and elongation during chromosome replication	N/A
Pfam	UHGV-0244472_13	PF00772	N/A	N/A	DnaB-like helicase N terminal domain	DnaB
Pfam	UHGV-0244472_13	PF03796	N/A	N/A	DnaB-like helicase C terminal domain	DnaB_C
COG	UHGV-0244472_13	COG0305	N/A	N/A	Replicative DNA helicase	N/A
structural_annotation	UHGV-0244472_13	PF03796,PF00772,MF_04155,TIGR00665,COG0305	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_16	phrog_16304	61.7	1.6e-17	N/A	unknown function
eggNOG-mapper	UHGV-0244472_16	768706.Desor_0679	76.3	0.00000000000000949	N/A	N/A
PHROG	UHGV-0244472_17	phrog_28936	157.9	0	N/A	unknown function
eggNOG-mapper	UHGV-0244472_17	573061.Clocel_3563	99.0	6.13e-23	N/A	N/A
structural_annotation	UHGV-0244472_17	PF11645,MF_01490,NF040854	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_18	PF00436,MF_00984,NF005242,COG2965	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_20	phrog_10048	59.7	1e-29	N/A	unknown function
eggNOG-mapper	UHGV-0244472_20	1094508.Tsac_2442	125.0	2e-32	N/A	N/A
structural_annotation	UHGV-0244472_20	PF06420,TIGR00607,COG5055	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_21	phrog_3377	105.0	7.2e-31	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244472_21	UniRef90_A0A855XMH1	82.8	1.92e-17	NUMOD1 domain-containing protein	N/A
eggNOG-mapper	UHGV-0244472_21	742767.HMPREF9456_02044	90.5	6.11e-21	N/A	N/A
PHROG	UHGV-0244472_22	phrog_298	67.6	4.7e-20	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244472_22	UniRef90_UPI001ABE80F6	91.7	1.68e-19	PD-(D/E)XK nuclease family protein	N/A
structural_annotation	UHGV-0244472_22	PF12705,MF_03030,TIGR00372,COG2887	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_24	phrog_9958	119.1	2.7e-35	N/A	unknown function
UniRef90	UHGV-0244472_24	UniRef90_UPI001D08A241	157.0	2.8026e-45	N/A	N/A
eggNOG-mapper	UHGV-0244472_24	1160721.RBI_I01591	130.0	7.74e-36	N/A	N/A
structural_annotation	UHGV-0244472_24	PF19789	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_25	NF007260	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0244472_31	583355.Caka_1855	49.7	0.00000242	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	N/A
COG	UHGV-0244472_31	COG1327	N/A	N/A	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	N/A
structural_annotation	UHGV-0244472_31	PF04606,NF007241	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_32	PF00210,MF_01441,NF011597,COG1528	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_33	PF18573,NF033147	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_34	PF04545,MF_00245,NF001074,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_38	phrog_1129	41.7	0.000000000017	holin	lysis
UniRef90	UHGV-0244472_38	UniRef90_A0A1M5CY75	57.0	0.00000000837	Phage holin family Hol44, holin superfamily V	N/A
eggNOG-mapper	UHGV-0244472_38	742740.HMPREF9474_03522	54.7	0.0000000113	N/A	N/A
structural_annotation	UHGV-0244472_38	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_40	phrog_32509	40.8	0.000000000031	N/A	unknown function
UniRef90	UHGV-0244472_40	UniRef90_UPI0018835F0C	215.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0244472_40	476272.RUMHYD_00002	103.0	2.46e-20	N/A	N/A
structural_annotation	UHGV-0244472_40	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0244472_41	K21472	60.9	2.6e-17	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	N/A
PHROG	UHGV-0244472_41	phrog_7767	46.8	0.00000000000028	metallo-endopeptidase	other
UniRef90	UHGV-0244472_41	UniRef90_A0A2V2FTH8	285.0	0	Peptidase M23	N/A
eggNOG-mapper	UHGV-0244472_41	665956.HMPREF1032_02928	244.0	0	N/A	N/A
Pfam	UHGV-0244472_41	PF01551	N/A	N/A	Peptidase family M23	Peptidase_M23
structural_annotation	UHGV-0244472_41	PF01551,NF040883	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_47	phrog_18190	118.9	1.9e-35	N/A	unknown function
UniRef90	UHGV-0244472_47	UniRef90_R5ILV2	83.2	0.000000000000628	Peptidase S74 domain-containing protein	N/A
eggNOG-mapper	UHGV-0244472_47	411471.SUBVAR_06932	287.0	0	N/A	N/A
structural_annotation	UHGV-0244472_47	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_48	phrog_1194	41.5	0.000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0244472_48	411471.SUBVAR_06933	78.6	5.72e-17	N/A	N/A
structural_annotation	UHGV-0244472_48	PF20458,TIGR02126,COG4718	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_49	phrog_1535	74.3	7.4e-36	tail length tape measure protein	tail
eggNOG-mapper	UHGV-0244472_49	397288.C806_01518	110.0	7.25e-22	Phage-related minor tail protein	N/A
COG	UHGV-0244472_49	COG5283	N/A	N/A	Phage-related tail protein	N/A
UniRef90	UHGV-0244472_51	UniRef90_UPI001D0975F6	78.6	1.55e-16	N/A	N/A
PHROG	UHGV-0244472_52	phrog_158	65.6	9.7e-19	major tail protein	tail
UniRef90	UHGV-0244472_52	UniRef90_D7GNW1	94.0	7.07e-22	Phage tail protein	N/A
eggNOG-mapper	UHGV-0244472_52	1158607.UAU_01767	60.1	0.00000000194	Phage tail tube protein, TTP	N/A
structural_annotation	UHGV-0244472_52	PF16463,TIGR02241,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_53	PF06141,TIGR02367,COG3167	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_55	PF07405,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_56	phrog_132	50.3	0.000000000000035	head-tail adaptor	connector
UniRef90	UHGV-0244472_56	UniRef90_R6N215	92.8	2.71e-22	Phage QLRG family putative DNA packaging	N/A
eggNOG-mapper	UHGV-0244472_56	673832.D2IYW8_9CAUD	54.3	0.0000000861	Phage gp6-like head-tail connector protein	N/A
Pfam	UHGV-0244472_56	PF05135	N/A	N/A	Phage gp6-like head-tail connector protein	Phage_connect_1
NCBIFam	UHGV-0244472_56	TIGR01560.2	N/A	N/A	head-tail connector protein	N/A
structural_annotation	UHGV-0244472_56	TIGR01560	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_57	phrog_247	235.0	0	major head protein	head and packaging
UniRef90	UHGV-0244472_57	UniRef90_UPI001BA5448B	221.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0244472_57	33035.JPJF01000106_gene3132	278.0	0	N/A	N/A
Pfam	UHGV-0244472_57	PF20036	N/A	N/A	Major capsid protein 13-like	Gp13-like
structural_annotation	UHGV-0244472_57	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_59	phrog_64	189.1	0	portal protein	head and packaging
UniRef90	UHGV-0244472_59	UniRef90_UPI001D06C00B	374.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0244472_59	1121866.AUGK01000003_gene1429	328.0	0	Phage portal protein, SPP1 Gp6-like	N/A
Pfam	UHGV-0244472_59	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0244472_59	PF05133,MF_04120,TIGR01538,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_61	phrog_38	176.2	0	terminase large subunit	head and packaging
UniRef90	UHGV-0244472_61	UniRef90_UPI00164E3A67	413.0	0	phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0244472_61	1121866.AUGK01000003_gene1428	283.0	0	chromosome segregation	N/A
COG	UHGV-0244472_61	COG5410	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_61	PF17289,PF02562,MF_04147,NF033889,COG5362,COG5410	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_62	phrog_4707	86.8	9.7e-26	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0244472_62	742741.HMPREF9475_03963	115.0	2.84e-27	N/A	N/A
Pfam	UHGV-0244472_62	PF13730	N/A	N/A	Helix-turn-helix domain	HTH_36
COG	UHGV-0244472_62	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-0244472_62	PF01978,TIGR04176,COG3355	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0244472_63	PF19607	N/A	N/A	N/A	N/A
KOfam	UHGV-0244472_67	K01520	136.8	1.8e-40	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	N/A
PHROG	UHGV-0244472_67	phrog_135	127.2	8.9e-38	dUTPase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244472_67	UniRef90_A0A6A2VG41	169.0	0	Deoxyuridine 5'-triphosphate nucleotidohydrolase	N/A
eggNOG-mapper	UHGV-0244472_67	1282887.AUJG01000016_gene1113	148.0	7.69313e-43	N/A	N/A
Pfam	UHGV-0244472_67	PF00692	N/A	N/A	dUTPase	dUTPase
NCBIFam	UHGV-0244472_67	TIGR00576.1	N/A	N/A	dUTP diphosphatase	N/A
COG	UHGV-0244472_67	COG0756	N/A	N/A	dUTP pyrophosphatase (dUTPase)	N/A
structural_annotation	UHGV-0244472_67	PF00692,MF_00116,TIGR00576,COG0756	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_69	phrog_236	66.5	7e-19	nucleotide kinase	other
UniRef90	UHGV-0244472_69	UniRef90_A0A7X2P7B7	64.7	0.0000000000309	N/A	N/A
eggNOG-mapper	UHGV-0244472_69	753084.F4YCQ0_9CAUD	65.1	0.0000000000474	N/A	N/A
Pfam	UHGV-0244472_69	PF11753	N/A	N/A	N/A	DUF3310
PHROG	UHGV-0244472_70	phrog_3377	120.4	1.2e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244472_70	UniRef90_A0A0R1VMU2	122.0	7.91e-32	Pathogenesis-related transcriptional factor and ERF protein	N/A
eggNOG-mapper	UHGV-0244472_70	1434319.W5RV26_9CAUD	117.0	2.73e-29	N/A	N/A
KOfam	UHGV-0244472_71	K03465	181.9	0	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	N/A
PHROG	UHGV-0244472_71	phrog_85	127.4	5.4e-38	thymidylate synthase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0244472_71	UniRef90_A0A2A7ALC5	232.0	0	Flavin-dependent thymidylate synthase	N/A
eggNOG-mapper	UHGV-0244472_71	657322.FPR_23400	217.0	0	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	N/A
Pfam	UHGV-0244472_71	PF02511	N/A	N/A	Thymidylate synthase complementing protein	Thy1
NCBIFam	UHGV-0244472_71	TIGR02170.1	N/A	N/A	FAD-dependent thymidylate synthase	N/A
COG	UHGV-0244472_71	COG1351	N/A	N/A	Thymidylate synthase ThyX, FAD-dependent family	N/A
HAMAP	UHGV-0244472_71	MF_01408	N/A	N/A	Flavin-dependent thymidylate synthase [thyX]	N/A
structural_annotation	UHGV-0244472_71	PF02511,MF_01408,TIGR02170,COG1351	N/A	N/A	N/A	N/A
PHROG	UHGV-0244472_75	phrog_419	85.6	8.7e-27	N/A	unknown function
UniRef90	UHGV-0244472_75	UniRef90_UPI001CBFD05B	107.0	1.23e-29	PGDYG domain-containing protein	N/A
eggNOG-mapper	UHGV-0244472_75	203119.Cthe_2457	106.0	1.01e-29	N/A	N/A
structural_annotation	UHGV-0244472_75	PF14083	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0244472	Yes	46,296	46	100	1
UHGV-1375941	No	46,296	46	100	1
UHGV-0121508	No	46,774	46	100	1
UHGV-1492910	No	46,774	46	100	1
UHGV-0225039	No	16,051	45	34	1
UHGV-1643624	No	14,507	46	31	1
UHGV-1622565	No	11,530	45	25	1
UHGV-1659830	No	10,135	45	22	1