vOTU vOTU-007389

vOTU: vOTU-007389

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-007389
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 → vSUBFAM-00013 → vGENUS-00034 → vSUBGEN-28862 → vOTU-007389
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0223785
Biosample ID	N/A
Genome length (bp)	43,065 bps
CheckV completeness	100.00% (Complete)
CDS count	73
CDS density	89.84%
tRNA count	4
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → Faecalibacterium	Total connections	832	Host agreement	97.24
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 100)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
structural_annotation	UHGV-0223785_2	PF12510	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_3	phrog_20016	197.4	0	N/A	unknown function
UniRef90	UHGV-0223785_3	UniRef90_A0A285PT46	209.0	0	Tumour necrosis factor-like domain	N/A
eggNOG-mapper	UHGV-0223785_3	1226322.HMPREF1545_00077	181.0	0	N/A	N/A
structural_annotation	UHGV-0223785_3	PF18573,NF033147	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_4	phrog_16490	147.6	6.44597e-44	N/A	unknown function
eggNOG-mapper	UHGV-0223785_4	1408437.JNJN01000043_gene803	143.0	4.27e-39	N/A	N/A
PHROG	UHGV-0223785_5	phrog_22984	77.1	1.2e-22	N/A	unknown function
PHROG	UHGV-0223785_6	phrog_21718	120.5	1.1e-35	N/A	unknown function
eggNOG-mapper	UHGV-0223785_6	397290.C810_05210	100.0	1.06e-24	N/A	N/A
PHROG	UHGV-0223785_7	phrog_3754	100.8	1.3e-29	N/A	unknown function
eggNOG-mapper	UHGV-0223785_7	1235790.C805_00054	109.0	3.71e-29	N/A	N/A
eggNOG-mapper	UHGV-0223785_9	1384065.JAGS01000001_gene3265	47.8	0.00000714	sequence-specific DNA binding	N/A
COG	UHGV-0223785_9	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0223785_9	PF13560,NF040522	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_12	phrog_1454	48.4	0.00000000000016	N/A	unknown function
UniRef90	UHGV-0223785_12	UniRef90_A0A0D1WCB4	49.7	0.00000176	Phosphomannomutase	N/A
eggNOG-mapper	UHGV-0223785_12	742740.HMPREF9474_04325	57.4	0.000000000269	N/A	N/A
structural_annotation	UHGV-0223785_13	PF07870,MF_01506	N/A	N/A	N/A	N/A
UniRef90	UHGV-0223785_15	UniRef90_UPI0018835F0C	620.0	0	collagen-like protein	N/A
eggNOG-mapper	UHGV-0223785_15	411483.FAEPRAA2165_00757	141.0	4.48e-35	N/A	N/A
structural_annotation	UHGV-0223785_15	PF10651	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_16	phrog_15303	115.2	2.9e-34	N/A	unknown function
Pfam	UHGV-0223785_16	PF09682	N/A	N/A	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
KOfam	UHGV-0223785_18	K07273	173.8	0	acm; lysozyme	N/A
PHROG	UHGV-0223785_18	phrog_291	144.2	1.00053e-42	endolysin	lysis
UniRef90	UHGV-0223785_18	UniRef90_E2ZES5	342.0	0	Glycosyl hydrolase family 25	N/A
eggNOG-mapper	UHGV-0223785_18	748224.HMPREF9436_00154	342.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0223785_18	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0223785_18	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0223785_18	PF01183,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_19	phrog_1382	49.4	0.000000000000034	N/A	unknown function
eggNOG-mapper	UHGV-0223785_19	411468.CLOSCI_00272	46.2	0.00000328	N/A	N/A
PHROG	UHGV-0223785_21	phrog_9534	50.3	0.000000000000034	head protein	head and packaging
eggNOG-mapper	UHGV-0223785_21	748224.HMPREF9436_00405	131.0	6.85e-32	domain, Protein	N/A
COG	UHGV-0223785_21	COG5492	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_22	phrog_3558	200.8	0	tail protein	tail
UniRef90	UHGV-0223785_22	UniRef90_UPI001C01D15B	171.0	3.39955e-42	phage tail protein	N/A
eggNOG-mapper	UHGV-0223785_22	1035184.HMPREF1042_1326	85.5	0.0000000000000118	Prophage endopeptidase tail	N/A
Pfam	UHGV-0223785_22	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
COG	UHGV-0223785_22	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0223785_22	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
UniRef90	UHGV-0223785_23	UniRef90_A0A417QGC1	116.0	3.15e-28	MtfA protein	N/A
eggNOG-mapper	UHGV-0223785_23	411490.ANACAC_00709	103.0	5.45e-24	phage tail	N/A
COG	UHGV-0223785_23	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0223785_23	PF05709,PF02408,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_24	phrog_9959	105.2	3.9e-31	tail length tape measure protein	tail
UniRef90	UHGV-0223785_24	UniRef90_A0A6N7TLD3	1224.0	0	Tape measure protein	N/A
eggNOG-mapper	UHGV-0223785_24	1492737.FEM08_12070	142.0	1.43e-32	tape measure	N/A
Pfam	UHGV-0223785_24	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-0223785_24	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-0223785_24	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-0223785_24	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_27	phrog_885	71.4	1e-20	major tail protein	tail
eggNOG-mapper	UHGV-0223785_27	1111121.HMPREF1247_0789	170.0	0	N/A	N/A
structural_annotation	UHGV-0223785_27	PF06488,TIGR01603,COG5437	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223785_28	PF13554	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_29	phrog_17977	40.9	0.000000000028	N/A	unknown function
UniRef90	UHGV-0223785_29	UniRef90_A0A844DHJ8	120.0	1.15e-32	Phage head closure protein	N/A
structural_annotation	UHGV-0223785_29	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_31	phrog_247	208.0	0	major head protein	head and packaging
UniRef90	UHGV-0223785_31	UniRef90_UPI001BA5448B	242.0	0	major capsid protein	N/A
eggNOG-mapper	UHGV-0223785_31	33035.JPJF01000106_gene3132	361.0	0	N/A	N/A
structural_annotation	UHGV-0223785_31	PF20036,MF_04113,TIGR04387,COG4653	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223785_32	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_34	phrog_5	44.9	0.0000000000028	tail completion or Neck1 protein	connector
UniRef90	UHGV-0223785_34	UniRef90_A0A6N7TNP6	268.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0223785_34	268407.PWYN_03010	69.7	0.000000000000442	Bacteriophage HK97-gp10, putative tail-component	N/A
Pfam	UHGV-0223785_34	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0223785_34	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_36	phrog_2468	79.9	1.6e-23	head morphogenesis	head and packaging
UniRef90	UHGV-0223785_36	UniRef90_A0A6N7TLR7	640.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-0223785_36	1504822.CCNO01000013_gene286	114.0	3.6e-25	cell adhesion	N/A
Pfam	UHGV-0223785_36	PF04233	N/A	N/A	Phage Mu protein F like protein	Phage_Mu_F
COG	UHGV-0223785_36	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223785_36	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_38	phrog_64	123.2	9.2e-37	portal protein	head and packaging
UniRef90	UHGV-0223785_38	UniRef90_A0A6N7TNT3	892.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0223785_38	642492.Clole_2764	82.8	0.0000000000000421	phage portal protein, SPP1	N/A
Pfam	UHGV-0223785_38	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-0223785_38	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
KOfam	UHGV-0223785_39	K06909	143.0	2.7003e-42	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0223785_39	phrog_10250	174.2	0	N/A	unknown function
UniRef90	UHGV-0223785_39	UniRef90_A0A844D8I4	846.0	0	PBSX family phage terminase large subunit	N/A
eggNOG-mapper	UHGV-0223785_39	411490.ANACAC_00783	488.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0223785_39	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
Pfam	UHGV-0223785_39	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-0223785_39	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-0223785_39	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0223785_39	PF04466,PF20454,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_40	phrog_309	107.4	1e-31	terminase small subunit	head and packaging
UniRef90	UHGV-0223785_40	UniRef90_UPI000AC737F1	92.8	4.35e-21	helix-turn-helix domain containing protein	N/A
eggNOG-mapper	UHGV-0223785_40	748224.HMPREF9436_03342	169.0	0	transposase activity	N/A
COG	UHGV-0223785_40	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
KOfam	UHGV-0223785_41	K00571	110.3	2.3e-32	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0223785_41	phrog_498	423.3	0	DNA methyltransferase	other
UniRef90	UHGV-0223785_41	UniRef90_UPI0012DE0D94	448.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0223785_41	1423758.BN55_01455	398.0	0	DNA methylase	N/A
PADLOC	UHGV-0223785_41	MTase_II_00015	359.0	0	Type II methyltransferase	RM
Pfam	UHGV-0223785_41	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0223785_41	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0223785_41	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0223785_41	PF01555,PF02195,MF_02015,MF_01872,NF010253,TIGR04285,COG0863,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_42	phrog_36	68.2	1.3e-19	transcriptional regulator	transcription regulation
UniRef90	UHGV-0223785_42	UniRef90_A0A6N7TNN9	273.0	0	N/A	N/A
eggNOG-mapper	UHGV-0223785_42	748224.HMPREF9436_01463	81.3	1.44e-17	N/A	N/A
Pfam	UHGV-0223785_42	PF07374	N/A	N/A	N/A	DUF1492
structural_annotation	UHGV-0223785_42	PF04545,MF_00674,NF009180,COG1342	N/A	N/A	N/A	N/A
KOfam	UHGV-0223785_44	K01160	60.7	4.4e-17	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	N/A
PHROG	UHGV-0223785_44	phrog_34	61.8	1.4e-17	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223785_44	UniRef90_A0A6N7TND6	229.0	0	RusA family crossover junction endodeoxyribonuclease	N/A
eggNOG-mapper	UHGV-0223785_44	875454.BAEW01000002_gene491	135.0	1.87e-39	Endodeoxyribonuclease RusA	N/A
Pfam	UHGV-0223785_44	PF05866	N/A	N/A	Endodeoxyribonuclease RusA	RusA
COG	UHGV-0223785_44	COG4570	N/A	N/A	Holliday junction resolvase RusA (prophage-encoded endonuclease)	N/A
structural_annotation	UHGV-0223785_44	PF05866,NF007305,COG4570	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_45	phrog_3136	107.5	5.3e-32	N/A	unknown function
UniRef90	UHGV-0223785_45	UniRef90_A0A6N7TMC2	169.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-0223785_45	1235793.C809_02645	55.1	0.00000191	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	N/A
COG	UHGV-0223785_45	COG4933	N/A	N/A	Predicted transcriptional regulator, contains an HTH and PUA-like domains	N/A
structural_annotation	UHGV-0223785_45	PF04266,MF_00684,NF008917,COG4933	N/A	N/A	N/A	N/A
KOfam	UHGV-0223785_48	K02086	58.8	4.1e-17	dnaD; DNA replication protein	N/A
PHROG	UHGV-0223785_48	phrog_186	71.5	1.5e-20	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223785_48	UniRef90_A0A6N7TLH4	376.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-0223785_48	877411.JMMA01000002_gene2052	63.2	0.0000000086	N/A	N/A
Pfam	UHGV-0223785_48	PF19808	N/A	N/A	N/A	DUF6291
Pfam	UHGV-0223785_48	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-0223785_48	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
structural_annotation	UHGV-0223785_48	PF19808,PF07261,TIGR01446,COG3935	N/A	N/A	N/A	N/A
UniRef90	UHGV-0223785_49	UniRef90_UPI001CBB85F6	113.0	2.37e-28	single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0223785_49	PF00436,MF_00720,NF004512,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_50	phrog_2760	179.4	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0223785_50	UniRef90_A0A3A6EAW6	526.0	0	Phage recombination protein Bet	N/A
eggNOG-mapper	UHGV-0223785_50	1235794.C811_01355	153.0	6.59031e-42	RecT family	N/A
Pfam	UHGV-0223785_50	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-0223785_50	TIGR01913.1	N/A	N/A	phage recombination protein Bet	N/A
COG	UHGV-0223785_50	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-0223785_50	PF03837,TIGR01913,COG3723	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_51	phrog_674	150.4	1.26117e-44	N/A	unknown function
UniRef90	UHGV-0223785_51	UniRef90_A0A3A6E846	481.0	0	N/A	N/A
eggNOG-mapper	UHGV-0223785_51	556268.OFAG_00840	87.8	2.86e-17	N/A	N/A
Pfam	UHGV-0223785_51	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0223785_51	PF07083	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223785_52	PF14120	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223785_54	PF09537	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223785_55	PF12270,NF040944	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0223785_56	PF10743,NF033787	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0223785_59	1121865.OMW_01950	69.3	0.0000000000000152	N/A	N/A
structural_annotation	UHGV-0223785_59	PF17516,NF007197	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0223785_60	760568.Desku_0919	95.9	1.02e-21	N/A	N/A
structural_annotation	UHGV-0223785_60	PF03787,TIGR02581,COG1604	N/A	N/A	N/A	N/A
KOfam	UHGV-0223785_61	K07741	138.2	1.2e-40	antB; anti-repressor protein	N/A
PHROG	UHGV-0223785_61	phrog_63	116.7	2.3e-34	anti-repressor Ant	transcription regulation
UniRef90	UHGV-0223785_61	UniRef90_A0A6N7TLD1	296.0	0	Phage antirepressor Ant	N/A
eggNOG-mapper	UHGV-0223785_61	1230342.CTM_16892	215.0	0	Phage antirepressor protein	N/A
Pfam	UHGV-0223785_61	PF08346	N/A	N/A	AntA/AntB antirepressor	AntA
Pfam	UHGV-0223785_61	PF03374	N/A	N/A	Phage antirepressor protein KilAC domain	ANT
COG	UHGV-0223785_61	COG3561	N/A	N/A	Phage anti-repressor protein Ant	N/A
structural_annotation	UHGV-0223785_61	PF03374,PF08346,TIGR02681,COG3561,COG3645	N/A	N/A	N/A	N/A
PHROG	UHGV-0223785_64	phrog_32852	46.2	0.00000000000062	N/A	unknown function
KOfam	UHGV-0223785_66	K22300	68.0	2e-19	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0223785_66	phrog_8	55.6	7.7e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0223785_66	UniRef90_A0A564SVW9	186.0	0	HTH-type transcriptional regulator ImmR	N/A
eggNOG-mapper	UHGV-0223785_66	748224.HMPREF9436_01444	149.0	1.26117e-44	N/A	N/A
Pfam	UHGV-0223785_66	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0223785_66	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0223785_66	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0223785_68	641112.ACOK01000103_gene519	55.1	0.00000104	N/A	N/A
UniRef90	UHGV-0223785_69	UniRef90_A0A3S9H8P5	130.0	6.31e-33	SAP domain-containing protein	N/A
eggNOG-mapper	UHGV-0223785_69	1280696.ATVY01000034_gene3237	117.0	1.89e-28	Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation	N/A
Pfam	UHGV-0223785_69	PF08461	N/A	N/A	Ribonuclease R winged-helix domain	HTH_12
UniRef90	UHGV-0223785_72	UniRef90_A0A6N7TLT0	387.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0223785_72	266265.Bxe_A3948	53.1	0.000000484	Helix-turn-helix domain	N/A
Pfam	UHGV-0223785_72	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0223785_72	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0223785_72	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0223785_73	K14059	141.9	7.29936e-42	int; integrase	N/A
PHROG	UHGV-0223785_73	phrog_1	165.5	0	integrase	integration and excision
UniRef90	UHGV-0223785_73	UniRef90_A0A6N7TNQ4	744.0	0	Tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-0223785_73	411471.SUBVAR_05137	261.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0223785_73	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0223785_73	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0223785_73	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0223785	Yes	43,065	55	100	1
UHGV-0194880	No	43,065	55	100	1
UHGV-0168210	No	27,770	55	66	1
UHGV-1465876	No	22,521	55	53	1
UHGV-0169358	No	20,672	55	49	1