vOTU vOTU-007568

vOTU: vOTU-007568

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-007568
Number of genomes	38
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00321 → vGENUS-00751 → vSUBGEN-37301 → vOTU-007568
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0068501
Biosample ID	SAMEA2580292
Genome length (bp)	33,370 bps
CheckV completeness	96.43% (High-quality)
CDS count	55
CDS density	90.34%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	141	Host agreement	84.4
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Dorea_A → Dorea_A longicatena	Total connections	47	Host agreement	93.62

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.43)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0068501_1	K18830	69.1	8.1e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0068501_1	phrog_8	50.0	0.000000000000031	transcriptional regulator	transcription regulation
UniRef90	UHGV-0068501_1	UniRef90_A0A6N9JS36	266.0	0	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0068501_1	1280698.AUJS01000007_gene1002	205.0	0	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0068501_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0068501_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0068501_1	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068501_2	UniRef90_UPI00156E5A24	143.0	2.01787e-43	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0068501_2	97139.C824_00059	70.1	0.00000000000000429	N/A	N/A
Pfam	UHGV-0068501_2	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0068501_2	PF13443,NF010465,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068501_4	UniRef90_UPI001D0976C2	58.9	0.00000107	actin family protein	N/A
PHROG	UHGV-0068501_8	phrog_599	46.9	0.00000000000064	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0068501_8	UniRef90_UPI00156DCAF3	166.0	0	Lar family restriction alleviation protein	N/A
eggNOG-mapper	UHGV-0068501_8	1235790.C805_00069	69.7	0.0000000000000113	Restriction alleviation protein Lar	N/A
Pfam	UHGV-0068501_8	PF14354	N/A	N/A	Restriction alleviation protein Lar	Lar_restr_allev
NCBIFam	UHGV-0068501_8	TIGR03655.1	N/A	N/A	Lar family restriction alleviation protein	N/A
dbAPIS	UHGV-0068501_8	APIS033	N/A	N/A	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	N/A
structural_annotation	UHGV-0068501_8	PF14354	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_9	phrog_23707	74.1	2.1e-21	N/A	unknown function
UniRef90	UHGV-0068501_9	UniRef90_UPI00156F2BF7	190.0	0	alanine racemase	N/A
eggNOG-mapper	UHGV-0068501_9	411483.FAEPRAA2165_01889	67.8	0.000000000001	N/A	N/A
structural_annotation	UHGV-0068501_10	PF14282	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_11	phrog_421	43.8	0.0000000000031	N/A	unknown function
UniRef90	UHGV-0068501_11	UniRef90_A0A3R7BR33	188.0	0	N/A	N/A
eggNOG-mapper	UHGV-0068501_11	1235800.C819_00518	145.0	6.48941e-42	N/A	N/A
PHROG	UHGV-0068501_14	phrog_3584	141.9	3.99931e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0068501_14	1280698.AUJS01000007_gene1013	352.0	0	N/A	N/A
structural_annotation	UHGV-0068501_14	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_16	phrog_824	146.7	5.74532e-44	N/A	unknown function
UniRef90	UHGV-0068501_16	UniRef90_UPI0015713852	337.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0068501_16	411470.RUMGNA_00207	219.0	0	VRR_NUC	N/A
Pfam	UHGV-0068501_16	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0068501_17	PF12286,MF_00839,NF007780	N/A	N/A	N/A	N/A
KOfam	UHGV-0068501_18	K03496	179.0	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0068501_18	phrog_164	166.9	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0068501_18	UniRef90_UPI00156DD98C	503.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-0068501_18	411459.RUMOBE_01750	360.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0068501_18	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0068501_18	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0068501_18	PF13614,MF_00533,NF010443,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0068501_20	K03497	74.1	2.6e-21	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0068501_20	phrog_15982	351.6	0	N/A	unknown function
UniRef90	UHGV-0068501_20	UniRef90_UPI0015702B3C	1134.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0068501_20	411470.RUMGNA_00213	300.0	0	ParB-like nuclease domain	N/A
Pfam	UHGV-0068501_20	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
COG	UHGV-0068501_20	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0068501_20	PF02195,MF_02015,TIGR04285,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_21	phrog_59	54.3	0.0000000000000018	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0068501_21	UniRef90_UPI00156F191E	266.0	0	NUMOD4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0068501_21	1410650.JHWL01000037_gene604	129.0	6.85e-35	N/A	N/A
structural_annotation	UHGV-0068501_21	PF07463,PF07453,TIGR01453	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_22	phrog_1936	61.4	1.6e-17	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0068501_22	UniRef90_UPI00156E25CF	241.0	0	type II toxin-antitoxin system PemK/MazF family toxin	N/A
eggNOG-mapper	UHGV-0068501_22	411461.DORFOR_01157	94.0	1.77e-21	N/A	N/A
Pfam	UHGV-0068501_22	PF02452	N/A	N/A	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
COG	UHGV-0068501_22	COG2337	N/A	N/A	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	N/A
PHROG	UHGV-0068501_25	phrog_6568	51.9	0.00000000000001	N/A	unknown function
PHROG	UHGV-0068501_26	phrog_11237	96.5	2.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0068501_26	411461.DORFOR_01161	199.0	0	N/A	N/A
UniRef90	UHGV-0068501_28	UniRef90_UPI00156EF43B	133.0	1.52e-39	chemotaxis protein	N/A
eggNOG-mapper	UHGV-0068501_28	1042156.CXIVA_01520	74.3	5.8e-17	N/A	N/A
structural_annotation	UHGV-0068501_28	PF10723,NF008671,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_30	phrog_5110	102.2	2.7e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0068501_30	UniRef90_UPI00156D89BA	201.0	0	P27 family phage terminase small subunit	N/A
eggNOG-mapper	UHGV-0068501_30	86416.Clopa_0336	104.0	1.36e-27	N/A	N/A
Pfam	UHGV-0068501_30	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-0068501_30	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_31	phrog_9	271.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0068501_31	UniRef90_UPI00156EA6D8	1117.0	0	terminase large subunit	N/A
eggNOG-mapper	UHGV-0068501_31	1211817.CCAT010000053_gene2129	572.0	0	Phage Terminase	N/A
Pfam	UHGV-0068501_31	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0068501_31	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0068501_31	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0068501_31	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_32	phrog_12	98.4	6.5e-29	portal protein	head and packaging
UniRef90	UHGV-0068501_32	UniRef90_UPI00156EE6C1	751.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0068501_32	1220589.CD32_01735	192.0	0	portal protein	N/A
Pfam	UHGV-0068501_32	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0068501_32	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0068501_32	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0068501_33	K01358	100.9	1.6e-29	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0068501_33	phrog_94	186.9	0	head maturation protease	head and packaging
UniRef90	UHGV-0068501_33	UniRef90_UPI00156DC26F	489.0	0	Clp protease ClpP	N/A
eggNOG-mapper	UHGV-0068501_33	1235792.C808_00085	204.0	0	Clp protease	N/A
Pfam	UHGV-0068501_33	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0068501_33	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0068501_33	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_34	phrog_10	101.0	1.3e-29	major head protein	head and packaging
UniRef90	UHGV-0068501_34	UniRef90_UPI00156ED36D	769.0	0	phage major capsid protein	N/A
eggNOG-mapper	UHGV-0068501_34	1384484.AEQU_1180	324.0	0	Phage capsid family	N/A
Pfam	UHGV-0068501_34	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0068501_34	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0068501_34	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0068501_34	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_35	phrog_749	40.8	0.000000000032	N/A	unknown function
UniRef90	UHGV-0068501_35	UniRef90_A0A1I3QJG6	60.1	0.00000000126	Phage gp6-like head-tail connector protein	N/A
structural_annotation	UHGV-0068501_35	PF05135	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_36	phrog_5635	43.6	0.000000000005	head-tail adaptor	connector
UniRef90	UHGV-0068501_36	UniRef90_A0A1I3QJF5	93.2	2.64e-22	Phage head-tail adaptor, putative, SPP1 family	N/A
eggNOG-mapper	UHGV-0068501_36	1384484.AEQU_1178	54.3	0.0000000914	N/A	N/A
structural_annotation	UHGV-0068501_36	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0068501_37	PF05657,COG3167	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_38	phrog_5509	84.7	9.6e-25	neck protein	connector
UniRef90	UHGV-0068501_38	UniRef90_W0FMR6	118.0	1.05e-31	Gp9 protein	N/A
structural_annotation	UHGV-0068501_38	TIGR01725	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068501_39	UniRef90_UPI00156E655F	333.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0068501_39	1384484.AEQU_1175	122.0	1.29e-32	N/A	N/A
structural_annotation	UHGV-0068501_39	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_40	phrog_933	41.4	0.000000000023	N/A	unknown function
UniRef90	UHGV-0068501_40	UniRef90_UPI0015711BC6	154.0	1.4013e-45	SAP domain-containing protein	N/A
Pfam	UHGV-0068501_40	PF02037	N/A	N/A	SAP domain	SAP
structural_annotation	UHGV-0068501_40	PF02037	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_42	phrog_13339	369.0	0	tail length tape measure protein	tail
UniRef90	UHGV-0068501_42	UniRef90_UPI0015701281	1339.0	0	phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0068501_42	1336234.JAGN01000004_gene517	321.0	0	Phage-related minor tail protein	N/A
Pfam	UHGV-0068501_42	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0068501_42	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0068501_42	COG5283	N/A	N/A	Phage-related tail protein	N/A
structural_annotation	UHGV-0068501_42	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
UniRef90	UHGV-0068501_43	UniRef90_UPI0015709E93	554.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0068501_43	411461.DORFOR_01176	279.0	0	N/A	N/A
structural_annotation	UHGV-0068501_43	PF16774,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_44	phrog_538	223.3	0	minor tail protein	tail
UniRef90	UHGV-0068501_44	UniRef90_UPI001E2C8064	345.0	0	siphovirus ReqiPepy6 Gp37-like family protein	N/A
eggNOG-mapper	UHGV-0068501_44	411461.DORFOR_01177	417.0	0	N/A	N/A
Pfam	UHGV-0068501_44	PF14594	N/A	N/A	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
structural_annotation	UHGV-0068501_44	PF14594,TIGR01665,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_45	phrog_13141	163.6	0	N/A	unknown function
UniRef90	UHGV-0068501_45	UniRef90_UPI001570499E	289.0	0	H-type lectin domain-containing protein	N/A
eggNOG-mapper	UHGV-0068501_45	411461.DORFOR_01178	262.0	0	N/A	N/A
structural_annotation	UHGV-0068501_45	PF20747	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_47	phrog_12931	107.7	6.8e-32	N/A	unknown function
eggNOG-mapper	UHGV-0068501_47	411461.DORFOR_00728	166.0	0	N/A	N/A
PHROG	UHGV-0068501_48	phrog_1382	76.6	1.5e-22	N/A	unknown function
eggNOG-mapper	UHGV-0068501_48	411461.DORFOR_00727	77.8	9.29e-19	N/A	N/A
PHROG	UHGV-0068501_49	phrog_15594	106.4	1.3e-31	N/A	unknown function
eggNOG-mapper	UHGV-0068501_49	1118055.CAGU01000013_gene763	60.5	0.000000000134	N/A	N/A
structural_annotation	UHGV-0068501_49	PF16640,TIGR04488	N/A	N/A	N/A	N/A
PHROG	UHGV-0068501_50	phrog_31538	66.3	5e-19	N/A	unknown function
eggNOG-mapper	UHGV-0068501_50	742740.HMPREF9474_02274	53.9	0.000000105	N/A	N/A
PHROG	UHGV-0068501_51	phrog_13589	197.7	0	N/A	unknown function
eggNOG-mapper	UHGV-0068501_51	742733.HMPREF9469_05009	260.0	0	N/A	N/A
PHROG	UHGV-0068501_52	phrog_13589	94.3	7.8e-28	N/A	unknown function
eggNOG-mapper	UHGV-0068501_52	411460.RUMTOR_01324	109.0	1.93e-25	N/A	N/A
PHROG	UHGV-0068501_54	phrog_4105	52.6	0.0000000000000076	N/A	unknown function
eggNOG-mapper	UHGV-0068501_54	537013.CLOSTMETH_01753	48.5	0.00000598	N/A	N/A
PHROG	UHGV-0068501_55	phrog_443	52.2	0.000000000000017	holin	lysis
UniRef90	UHGV-0068501_55	UniRef90_UPI001570A68C	138.0	2.4e-41	holin	N/A
eggNOG-mapper	UHGV-0068501_55	411462.DORLON_00825	95.5	4.04e-25	Putative lactococcus lactis phage r1t holin	N/A
Pfam	UHGV-0068501_55	PF16945	N/A	N/A	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
structural_annotation	UHGV-0068501_55	PF16945	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0068501	Yes	33,370	42	96	1
UHGV-0142826	No	41,319	42	100	1
UHGV-2180262	No	40,548	42	100	1
UHGV-2042985	No	40,530	42	100	1
UHGV-0045179	No	38,181	42	100	1
UHGV-2051141	No	37,843	42	100	1
UHGV-1439280	No	37,663	42	100	1
UHGV-1395071	No	36,414	42	100	1
UHGV-2222435	No	36,217	42	100	1
UHGV-2184104	No	36,146	42	100	1
UHGV-0205929	No	36,087	42	100	1
UHGV-1464601	No	34,612	42	100	1
UHGV-0088745	No	33,668	42	97	1
UHGV-0094729	No	33,094	42	96	1
UHGV-0150814	No	33,092	42	96	1
UHGV-0086642	No	32,796	42	95	1
UHGV-0190923	No	30,993	42	90	1
UHGV-2192334	No	30,990	42	90	1
UHGV-1505352	No	30,969	42	89	1
UHGV-2172237	No	30,447	42	88	1
UHGV-1550848	No	30,243	42	87	1
UHGV-0089400	No	26,757	42	77	1
UHGV-0058375	No	26,239	42	76	1
UHGV-1482641	No	26,239	42	76	1
UHGV-1451301	No	24,907	43	72	1
UHGV-0094261	No	24,695	43	71	1
UHGV-2166741	No	24,520	42	71	1
UHGV-1464803	No	21,531	43	62	1
UHGV-1382593	No	22,359	42	60	1
UHGV-1464336	No	20,319	42	54	1
UHGV-1578678	No	16,855	43	49	1
UHGV-1810102	No	12,797	44	37	1
UHGV-1781251	No	12,346	44	36	1
UHGV-0059916	No	12,890	42	33	1
UHGV-1591212	No	11,784	42	32	1
UHGV-1662806	No	11,276	41	29	1
UHGV-1620369	No	10,329	42	26	1
UHGV-1631629	No	11,621	42	18	1