vOTU vOTU-007882

vOTU: vOTU-007882

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-007882
Number of genomes	33
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00309 → vSUBGEN-03893 → vOTU-007882
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis
Host range breadth	Species
Lifestyle	temperate (Evidence: geNomad)

Representative genome
Genome ID	UHGV-0094573
Biosample ID	N/A
Genome length (bp)	34,492 bps
CheckV completeness	97.34% (High-quality)
CDS count	48
CDS density	93.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	271	Host agreement	73.43
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Mediterraneibacter → Mediterraneibacter faecis	Total connections	75	Host agreement	85.33

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 97.34)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0094573_1	phrog_11541	117.3	1.4e-34	N/A	unknown function
UniRef90	UHGV-0094573_1	UniRef90_UPI001E3B00C2	183.0	0	SGNH/GDSL hydrolase family protein	N/A
eggNOG-mapper	UHGV-0094573_1	243265.plu2328	90.1	6.18e-18	lipolytic protein G-D-S-L family	N/A
Pfam	UHGV-0094573_1	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
COG	UHGV-0094573_1	COG2755	N/A	N/A	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	N/A
KOfam	UHGV-0094573_2	K10804	53.5	0.0000000000000028	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	N/A
Pfam	UHGV-0094573_2	PF13472	N/A	N/A	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
PHROG	UHGV-0094573_3	phrog_11037	132.4	4.9e-39	N/A	unknown function
UniRef90	UHGV-0094573_3	UniRef90_A0A1Q6K9M8	643.0	0	NlpC/P60 domain-containing protein	N/A
eggNOG-mapper	UHGV-0094573_3	33035.JPJF01000093_gene2240	321.0	0	NlpC/P60 family	N/A
Pfam	UHGV-0094573_3	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
Pfam	UHGV-0094573_3	PF05382	N/A	N/A	Bacteriophage peptidoglycan hydrolase	Amidase_5
COG	UHGV-0094573_3	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-0094573_3	PF18013,PF05382,NF033742,COG0791	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_4	phrog_13289	435.7	0	tail protein	tail
UniRef90	UHGV-0094573_4	UniRef90_D4M5A0	1182.0	0	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0094573_4	1235798.C817_02568	475.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0094573_4	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0094573_4	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0094573_4	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-0094573_4	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_5	phrog_33	64.2	3.3e-18	distal tail protein Dit	tail
UniRef90	UHGV-0094573_5	UniRef90_UPI000E50043B	485.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0094573_5	1232452.BAIB02000007_gene1615	225.0	0	phage tail	N/A
COG	UHGV-0094573_5	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0094573_5	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_6	phrog_1272	216.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0094573_6	UniRef90_A0A373N7M8	1108.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0094573_6	1035184.HMPREF1042_1328	327.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0094573_6	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0094573_6	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0094573_6	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-0094573_8	phrog_88	97.4	1.6e-28	major tail protein	tail
UniRef90	UHGV-0094573_8	UniRef90_D4M596	392.0	0	Phage major tail protein, phi13 family	N/A
Pfam	UHGV-0094573_8	PF04630	N/A	N/A	Phage tail tube protein	Phage_TTP_1
NCBIFam	UHGV-0094573_8	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0094573_8	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_9	phrog_5	47.8	0.00000000000034	tail completion or Neck1 protein	connector
UniRef90	UHGV-0094573_9	UniRef90_D4M595	245.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-0094573_9	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-0094573_9	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094573_10	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-0094573_11	UniRef90_D4M593	245.0	0	Phage head-tail adaptor, putative, SPP1 family	N/A
structural_annotation	UHGV-0094573_11	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_12	phrog_749	40.5	0.000000000047	N/A	unknown function
PHROG	UHGV-0094573_13	phrog_10	89.7	2.8e-26	major head protein	head and packaging
UniRef90	UHGV-0094573_13	UniRef90_D4M591	731.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0094573_13	1232452.BAIB02000007_gene1625	472.0	0	Phage capsid family	N/A
Pfam	UHGV-0094573_13	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0094573_13	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0094573_13	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0094573_13	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-0094573_14	K01358	113.8	2.1e-33	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0094573_14	phrog_94	178.5	0	head maturation protease	head and packaging
UniRef90	UHGV-0094573_14	UniRef90_D4M590	504.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0094573_14	1235792.C808_00085	209.0	0	Clp protease	N/A
Pfam	UHGV-0094573_14	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0094573_14	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0094573_14	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_15	phrog_12	64.8	6.1e-19	portal protein	head and packaging
UniRef90	UHGV-0094573_15	UniRef90_UPI00156D5DC9	589.0	0	phage portal protein	N/A
eggNOG-mapper	UHGV-0094573_15	1232452.BAIB02000007_gene1627	278.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-0094573_15	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0094573_15	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0094573_15	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_16	phrog_9	257.8	0	terminase large subunit	head and packaging
UniRef90	UHGV-0094573_16	UniRef90_D4M588	1135.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-0094573_16	1232452.BAIB02000007_gene1629	535.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-0094573_16	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0094573_16	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0094573_16	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0094573_16	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_17	phrog_5110	102.0	3.3e-30	terminase small subunit	head and packaging
UniRef90	UHGV-0094573_17	UniRef90_A0A1C5LZF0	102.0	8.52e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0094573_17	1211817.CCAT010000008_gene938	83.2	1.26e-18	Phage terminase, small subunit	N/A
Pfam	UHGV-0094573_17	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
COG	UHGV-0094573_17	COG5484	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0094573_17	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-0094573_18	K07451	49.3	0.000000000000097	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0094573_18	phrog_119	82.9	4.2e-24	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094573_18	UniRef90_UPI00156F1D4A	202.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0094573_18	1232452.BAIB02000007_gene1631	93.6	2.51e-23	HNH nucleases	N/A
Pfam	UHGV-0094573_18	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0094573_18	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0094573_19	PF14524,NF041178	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0094573_20	913865.DOT_2911	69.3	0.000000000000768	N/A	N/A
PHROG	UHGV-0094573_22	phrog_36	91.3	1.2e-26	transcriptional regulator	transcription regulation
UniRef90	UHGV-0094573_22	UniRef90_A0A373STV4	283.0	0	N/A	N/A
eggNOG-mapper	UHGV-0094573_22	411461.DORFOR_00754	159.0	0	sigma factor activity	N/A
Pfam	UHGV-0094573_22	PF07374	N/A	N/A	N/A	DUF1492
COG	UHGV-0094573_22	COG1191	N/A	N/A	DNA-directed RNA polymerase specialized sigma subunit	N/A
structural_annotation	UHGV-0094573_22	PF07374,MF_00674,NF007227,COG1342	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_28	phrog_7566	116.2	1e-34	N/A	unknown function
eggNOG-mapper	UHGV-0094573_28	665950.HMPREF1025_02547	165.0	0	N/A	N/A
PHROG	UHGV-0094573_29	phrog_15077	94.9	1.5e-27	N/A	unknown function
UniRef90	UHGV-0094573_29	UniRef90_A0A3A6HZA9	234.0	0	N/A	N/A
eggNOG-mapper	UHGV-0094573_29	1280698.AUJS01000007_gene1019	377.0	0	N/A	N/A
structural_annotation	UHGV-0094573_29	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_30	phrog_8470	230.6	0	N/A	unknown function
UniRef90	UHGV-0094573_30	UniRef90_UPI001C01E393	587.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-0094573_30	1280698.AUJS01000007_gene1018	857.0	0	N/A	N/A
Pfam	UHGV-0094573_30	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-0094573_30	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_31	phrog_4433	71.1	4.8e-24	N/A	unknown function
eggNOG-mapper	UHGV-0094573_31	1280698.AUJS01000007_gene1017	186.0	0	N/A	N/A
eggNOG-mapper	UHGV-0094573_32	1280698.AUJS01000007_gene1016	234.0	0	N/A	N/A
KOfam	UHGV-0094573_33	K03469	63.2	5.8e-18	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-0094573_33	phrog_531	63.5	3.9e-18	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0094573_33	UniRef90_D4M578	289.0	0	Ribonuclease HI	N/A
eggNOG-mapper	UHGV-0094573_33	665950.HMPREF1025_02551	152.0	1.4013e-45	RNase H	N/A
Pfam	UHGV-0094573_33	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-0094573_33	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-0094573_33	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_34	phrog_3584	153.2	1.4013e-45	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0094573_34	665950.HMPREF1025_02552	313.0	0	N/A	N/A
structural_annotation	UHGV-0094573_34	PF21578,NF041486	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_40	phrog_4392	46.0	0.0000000000007	N/A	unknown function
UniRef90	UHGV-0094573_40	UniRef90_UPI000E489044	172.0	0	membrane lipoprotein lipid attachment site-containing protein	N/A
structural_annotation	UHGV-0094573_42	PF07378,MF_00783,COG5443	N/A	N/A	N/A	N/A
KOfam	UHGV-0094573_45	K18830	71.1	1.5e-20	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0094573_45	phrog_4	52.7	0.000000000000012	transcriptional repressor	transcription regulation
UniRef90	UHGV-0094573_45	UniRef90_A0A374EB41	243.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0094573_45	445972.ANACOL_03315	142.0	3.81013e-42	N/A	N/A
Pfam	UHGV-0094573_45	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0094573_45	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0094573_45	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-0094573_46	K10716	135.8	3.8e-40	kch, trkA, mthK, pch; voltage-gated potassium channel	N/A
PHROG	UHGV-0094573_46	phrog_7872	198.1	0	N/A	unknown function
UniRef90	UHGV-0094573_46	UniRef90_D4M567	443.0	0	Ion channel	N/A
eggNOG-mapper	UHGV-0094573_46	411459.RUMOBE_00964	276.0	0	Ion channel	N/A
Pfam	UHGV-0094573_46	PF07885	N/A	N/A	Ion channel	Ion_trans_2
COG	UHGV-0094573_46	COG1226	N/A	N/A	Voltage-gated potassium channel Kch	N/A
structural_annotation	UHGV-0094573_46	PF07885,NF040645	N/A	N/A	N/A	N/A
PHROG	UHGV-0094573_47	phrog_10934	107.1	9e-32	N/A	unknown function
eggNOG-mapper	UHGV-0094573_47	742722.HMPREF9463_00385	106.0	2.03e-24	N/A	N/A
KOfam	UHGV-0094573_48	K06400	365.5	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0094573_48	phrog_95	372.4	0	integrase	integration and excision
UniRef90	UHGV-0094573_48	UniRef90_A5KP69	758.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0094573_48	411460.RUMTOR_02053	758.0	0	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	N/A
Pfam	UHGV-0094573_48	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0094573_48	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0094573_48	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0094573_48	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0094573_48	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0094573	Yes	34,492	42	97	1
UHGV-2167707	No	38,337	42	100	1
UHGV-0077341	No	36,644	42	100	1
UHGV-0039182	No	36,587	42	100	1
UHGV-0092899	No	34,627	42	98	1
UHGV-0013006	No	32,749	42	93	1
UHGV-0009949	No	32,618	42	92	1
UHGV-2148762	No	32,595	42	91	1
UHGV-0164285	No	28,928	43	82	1
UHGV-1961171	No	24,782	42	70	1
UHGV-1462477	No	24,007	44	68	1
UHGV-0012523	No	23,230	44	66	1
UHGV-1427710	No	21,044	42	60	1
UHGV-1990441	No	19,792	42	56	1
UHGV-0387414	No	17,187	42	48	1
UHGV-1760878	No	18,545	42	48	1
UHGV-1769669	No	16,501	43	46	1
UHGV-1638029	No	16,110	42	46	1
UHGV-0258926	No	16,035	43	45	1
UHGV-0098299	No	15,823	43	45	1
UHGV-1816803	No	15,823	43	45	1
UHGV-1840027	No	16,347	41	44	1
UHGV-1731723	No	15,303	43	43	1
UHGV-1340289	No	15,294	41	43	1
UHGV-1647069	No	14,720	42	42	1
UHGV-0200701	No	14,838	43	42	1
UHGV-0200837	No	14,540	41	41	1
UHGV-1834644	No	13,881	43	39	1
UHGV-1613069	No	11,520	42	32	1
UHGV-1707301	No	10,848	41	30	1
UHGV-1945715	No	12,233	40	29	1
UHGV-1752126	No	10,748	42	27	1
UHGV-1652988	No	10,077	41	26	1