vOTU vOTU-008301

vOTU: vOTU-008301

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-008301
Number of genomes	14
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00342 → vGENUS-04208 → vSUBGEN-02323 → vOTU-008301
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0105971
Biosample ID	SAMEA3708862
Genome length (bp)	34,445 bps
CheckV completeness	99.20% (High-quality)
CDS count	51
CDS density	89.77%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A	Total connections	645	Host agreement	96.12
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A	Total connections	7	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.2)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0105971_1	phrog_1558	133.6	1.2e-39	N/A	unknown function
UniRef90	UHGV-0105971_1	UniRef90_UPI001EE9266C	130.0	1.7e-35	sigma-70 region 4 domain-containing protein	N/A
eggNOG-mapper	UHGV-0105971_1	411470.RUMGNA_02058	158.0	0	N/A	N/A
structural_annotation	UHGV-0105971_1	PF08281,MF_00674,TIGR01636,COG2739	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_2	phrog_1066	110.2	1.2e-32	N/A	unknown function
eggNOG-mapper	UHGV-0105971_2	411470.RUMGNA_02061	158.0	0	N/A	N/A
structural_annotation	UHGV-0105971_2	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_3	phrog_9	349.3	0	terminase large subunit	head and packaging
UniRef90	UHGV-0105971_3	UniRef90_A0A7C9KZF1	863.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0105971_3	411470.RUMGNA_02062	847.0	0	N/A	N/A
Pfam	UHGV-0105971_3	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0105971_3	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0105971_3	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0105971_3	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_4	phrog_12	90.0	2.1e-26	portal protein	head and packaging
UniRef90	UHGV-0105971_4	UniRef90_A0A7C9LEF5	610.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0105971_4	397290.C810_00419	567.0	0	Phage portal protein	N/A
Pfam	UHGV-0105971_4	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0105971_4	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0105971_4	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0105971_5	K06904	105.4	8e-31	N/A	N/A
PHROG	UHGV-0105971_5	phrog_80	129.5	3.9e-38	head maturation protease	head and packaging
UniRef90	UHGV-0105971_5	UniRef90_A0A7C9L2H1	233.0	0	HK97 family phage prohead protease	N/A
eggNOG-mapper	UHGV-0105971_5	411470.RUMGNA_02064	215.0	0	Caudovirus prohead serine protease	N/A
Pfam	UHGV-0105971_5	PF04586	N/A	N/A	Caudovirus prohead serine protease	Peptidase_S78
NCBIFam	UHGV-0105971_5	TIGR01543.1	N/A	N/A	HK97 family phage prohead protease	N/A
COG	UHGV-0105971_5	COG3740	N/A	N/A	Phage head maturation protease	N/A
structural_annotation	UHGV-0105971_5	PF04586,TIGR01543,COG3740	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_6	phrog_10	139.5	3.00004e-41	major head protein	head and packaging
UniRef90	UHGV-0105971_6	UniRef90_C9LCN3	462.0	0	Phage major capsid protein, HK97 family	N/A
eggNOG-mapper	UHGV-0105971_6	411470.RUMGNA_02065	462.0	0	N/A	N/A
Pfam	UHGV-0105971_6	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0105971_6	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0105971_6	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0105971_6	PF05065,PF19962,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
UniRef90	UHGV-0105971_7	UniRef90_A0A7C9LC86	67.8	0.00000000000212	SAP domain-containing protein	N/A
Pfam	UHGV-0105971_7	PF02037	N/A	N/A	SAP domain	SAP
structural_annotation	UHGV-0105971_7	PF14000	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_8	phrog_5223	81.7	5.1e-24	neck protein	connector
UniRef90	UHGV-0105971_8	UniRef90_A0A7C9LAV1	105.0	2.46e-27	DNA-packaging protein	N/A
eggNOG-mapper	UHGV-0105971_8	411470.RUMGNA_02067	82.8	4.28e-19	N/A	N/A
PHROG	UHGV-0105971_9	phrog_1951	68.1	1e-19	head-tail adaptor	connector
UniRef90	UHGV-0105971_9	UniRef90_UPI00189EBA11	77.4	9.69e-17	phage head closure protein	N/A
eggNOG-mapper	UHGV-0105971_9	1123263.AUKY01000046_gene471	53.5	0.0000000541	N/A	N/A
NCBIFam	UHGV-0105971_9	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0105971_9	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_10	phrog_5	41.6	0.000000000032	tail completion or Neck1 protein	connector
UniRef90	UHGV-0105971_10	UniRef90_A0A7C9LD40	106.0	3.79e-27	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0105971_10	1226322.HMPREF1545_00119	85.1	1.39e-19	N/A	N/A
Pfam	UHGV-0105971_10	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0105971_10	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0105971_11	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_12	phrog_2175	77.2	2.6e-22	protein with Ig domain	other
eggNOG-mapper	UHGV-0105971_12	457421.CBFG_03714	228.0	0	N/A	N/A
structural_annotation	UHGV-0105971_12	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0105971_13	411468.CLOSCI_00542	76.3	1.52e-16	N/A	N/A
structural_annotation	UHGV-0105971_13	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_14	phrog_1272	426.3	0	tail length tape measure protein	tail
UniRef90	UHGV-0105971_14	UniRef90_A0A0M6WZJ0	422.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0105971_14	946235.CAER01000065_gene2435	236.0	0	Phage tail tape measure protein	N/A
Pfam	UHGV-0105971_14	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-0105971_14	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-0105971_14	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0105971_14	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_15	phrog_33	70.3	4.6e-20	distal tail protein Dit	tail
UniRef90	UHGV-0105971_15	UniRef90_UPI00164BA811	165.0	0	phage tail family protein	N/A
eggNOG-mapper	UHGV-0105971_15	1160721.RBI_I01575	151.0	2.96935e-42	Phage tail protein	N/A
COG	UHGV-0105971_15	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0105971_15	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_16	phrog_1067	396.3	0	minor head protein	head and packaging
UniRef90	UHGV-0105971_16	UniRef90_A0A7C9HAK5	1065.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0105971_16	1160721.RBI_I01574	417.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0105971_16	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0105971_16	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0105971_16	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0105971_16	PF14594,PF04862,PF20843,TIGR01665,NF033675,COG4926,COG4266	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_19	phrog_19280	102.8	2.3e-30	N/A	unknown function
PHROG	UHGV-0105971_21	phrog_199	86.4	3.3e-25	holin	lysis
UniRef90	UHGV-0105971_21	UniRef90_A0A7C9KZL1	214.0	0	Holin	N/A
eggNOG-mapper	UHGV-0105971_21	411459.RUMOBE_01714	178.0	0	Bacteriophage holin family	N/A
Pfam	UHGV-0105971_21	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0105971_21	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0105971_21	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0105971_21	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0105971_22	K07273	134.3	1e-39	acm; lysozyme	N/A
PHROG	UHGV-0105971_22	phrog_291	93.3	3.1e-27	endolysin	lysis
UniRef90	UHGV-0105971_22	UniRef90_UPI001D04C319	207.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0105971_22	1235800.C819_00458	189.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-0105971_22	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0105971_22	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0105971_22	PF01183,NF003627,COG3757,COG5492	N/A	N/A	N/A	N/A
KOfam	UHGV-0105971_25	K06400	213.9	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0105971_25	phrog_95	247.7	0	integrase	integration and excision
UniRef90	UHGV-0105971_25	UniRef90_U2RFE5	507.0	0	Resolvase protein	N/A
eggNOG-mapper	UHGV-0105971_25	1256908.HMPREF0373_00206	507.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-0105971_25	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0105971_25	PF07508	N/A	N/A	Recombinase	Recombinase
COG	UHGV-0105971_25	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0105971_25	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
KOfam	UHGV-0105971_26	K23779	50.9	0.000000000000039	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0105971_26	phrog_3	42.1	0.000000000029	transcriptional repressor	transcription regulation
UniRef90	UHGV-0105971_26	UniRef90_A0A3D5LSQ6	94.0	3.17e-23	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0105971_26	411470.RUMGNA_00189	86.7	4.11e-21	Cro/C1-type HTH DNA-binding domain	N/A
PADLOC	UHGV-0105971_26	retron_type_VI_hth_cluster2_1	41.2	0.00000000004	N/A	Retron
Pfam	UHGV-0105971_26	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
KOfam	UHGV-0105971_28	K18830	74.5	1.3e-21	pezA; HTH-type transcriptional regulator / antitoxin PezA	N/A
PHROG	UHGV-0105971_28	phrog_8	58.6	1e-16	transcriptional regulator	transcription regulation
UniRef90	UHGV-0105971_28	UniRef90_A0A417W960	180.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0105971_28	1235793.C809_03587	150.0	5.60519e-45	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0105971_28	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-0105971_28	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0105971_28	PF01381,MF_00535,NF041951,COG1476	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0105971_32	411468.CLOSCI_00322	45.4	0.00000705	N/A	N/A
eggNOG-mapper	UHGV-0105971_41	1280682.AUKA01000005_gene2560	55.8	0.0000015	N/A	N/A
Pfam	UHGV-0105971_41	PF18941	N/A	N/A	N/A	DUF5688
PHROG	UHGV-0105971_42	phrog_26861	94.2	7e-28	N/A	unknown function
UniRef90	UHGV-0105971_42	UniRef90_A0A7C9LD13	129.0	3.25e-34	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0105971_42	1292035.H476_3036	85.9	5.64e-18	Single-strand binding protein family	N/A
Pfam	UHGV-0105971_42	PF00436	N/A	N/A	Single-strand binding protein family	SSB
COG	UHGV-0105971_42	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0105971_42	PF00436,PF13567,MF_00984,NF004476,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_43	phrog_3584	201.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0105971_43	411470.RUMGNA_02047	369.0	0	N/A	N/A
structural_annotation	UHGV-0105971_43	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0105971_44	phrog_824	140.6	5.29971e-42	N/A	unknown function
UniRef90	UHGV-0105971_44	UniRef90_A0A7C9H491	208.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0105971_44	411470.RUMGNA_02049	165.0	0	VRR-NUC domain	N/A
Pfam	UHGV-0105971_44	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0105971_44	PF08774	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0105971_45	658655.HMPREF0988_00884	89.4	3.23e-21	N/A	N/A
eggNOG-mapper	UHGV-0105971_46	658655.HMPREF0988_00884	151.0	5.1848e-44	N/A	N/A
KOfam	UHGV-0105971_48	K03496	165.8	0	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-0105971_48	phrog_164	161.6	0	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0105971_48	UniRef90_A0A7C9H418	343.0	0	AAA family ATPase	N/A
eggNOG-mapper	UHGV-0105971_48	411470.RUMGNA_02050	281.0	0	CobQ CobB MinD ParA nucleotide binding domain protein	N/A
Pfam	UHGV-0105971_48	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-0105971_48	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-0105971_48	PF13614,MF_00533,TIGR03453,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-0105971_49	K03497	61.6	2.2e-17	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0105971_49	phrog_15982	438.7	0	N/A	unknown function
UniRef90	UHGV-0105971_49	UniRef90_A0A7C9HAH3	516.0	0	N/A	N/A
eggNOG-mapper	UHGV-0105971_49	411470.RUMGNA_02052	408.0	0	N/A	N/A
Pfam	UHGV-0105971_49	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
Pfam	UHGV-0105971_49	PF12961	N/A	N/A	N/A	DUF3850
COG	UHGV-0105971_49	COG1475	N/A	N/A	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	N/A
structural_annotation	UHGV-0105971_49	PF12961,PF02195,MF_02015,MF_00684,TIGR04285,NF003443,COG1475,COG3097	N/A	N/A	N/A	N/A
UniRef90	UHGV-0105971_51	UniRef90_U2CXQ8	134.0	8.91e-40	Toxin-antitoxin system, antitoxin component, Xre family	N/A
eggNOG-mapper	UHGV-0105971_51	203119.Cthe_1750	55.8	0.00000000162	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0105971_51	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-0105971_51	PF13560,TIGR02612,COG1396	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0105971	Yes	34,445	38	99	1
UHGV-0184194	No	35,259	38	100	1
UHGV-0136838	No	30,855	38	100	1
UHGV-2020776	No	34,085	38	98	1
UHGV-1532949	No	32,538	38	94	1
UHGV-1541206	No	30,964	39	89	1
UHGV-1543460	No	29,840	38	86	1
UHGV-1274393	No	24,727	39	71	1
UHGV-1451725	No	24,727	39	71	1
UHGV-1501600	No	19,828	40	57	1
UHGV-1475068	No	17,411	40	50	1
UHGV-1777607	No	17,268	40	50	1
UHGV-1737055	No	14,156	39	41	1
UHGV-1629719	No	11,319	36	32	1