vOTU vOTU-008333

vOTU: vOTU-008333

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-008333
Number of genomes	17
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Taxonomy (UHGV)	vFAM-00090 → vSUBFAM-00163 → vGENUS-13901 → vSUBGEN-22803 → vOTU-008333
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0200605
Biosample ID	SAMN09781729
Genome length (bp)	13,440 bps
CheckV completeness	99.90% (High-quality)
CDS count	20
CDS density	87.14%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	PHIST
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → CAG-83	Total connections	5	Host agreement	100
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Oscillospiraceae → ER4 → ER4 sp000765235	Total connections	42	Host agreement	85.71

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0200605_1	K23779	72.2	8.7e-21	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	N/A
PHROG	UHGV-0200605_1	phrog_3	63.1	7.4e-18	transcriptional repressor	transcription regulation
UniRef90	UHGV-0200605_1	UniRef90_A0A1C5UYY8	73.9	0.000000000000752	RapGH repressor	N/A
eggNOG-mapper	UHGV-0200605_1	1415774.U728_2385	67.0	0.0000000000291	helix-turn-helix	N/A
PADLOC	UHGV-0200605_1	retron_type_VI_hth_cluster2_1	51.8	0.0000000000000088	N/A	Retron
Pfam	UHGV-0200605_1	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0200605_1	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
KOfam	UHGV-0200605_2	K14623	395.5	0	dinD; DNA-damage-inducible protein D	N/A
PHROG	UHGV-0200605_2	phrog_8036	403.0	0	N/A	unknown function
UniRef90	UHGV-0200605_2	UniRef90_A0A1Y4LUW1	460.0	0	DNA damage-inducible protein D	N/A
eggNOG-mapper	UHGV-0200605_2	1514668.JOOA01000001_gene65	420.0	0	BRO family, N-terminal domain	N/A
AcrCatalog	UHGV-0200605_2	cluster_17589	152.0	0	NA	N/A
PADLOC	UHGV-0200605_2	Specificity_I_00032	379.2	0	Type I specificity subunit	RM
Pfam	UHGV-0200605_2	PF02498	N/A	N/A	BRO family, N-terminal domain	Bro-N
NCBIFam	UHGV-0200605_2	NF008573.0	N/A	N/A	DNA damage-inducible protein D	N/A
COG	UHGV-0200605_2	COG3645	N/A	N/A	Phage antirepressor protein YoqD, KilAC domain	N/A
structural_annotation	UHGV-0200605_2	PF09669,NF008573,COG3646	N/A	N/A	N/A	N/A
KOfam	UHGV-0200605_3	K14059	249.2	0	int; integrase	N/A
PHROG	UHGV-0200605_3	phrog_1	207.3	0	integrase	integration and excision
UniRef90	UHGV-0200605_3	UniRef90_UPI0019598861	582.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0200605_3	718252.FP2_06900	274.0	0	Phage integrase, N-terminal SAM-like domain	N/A
Pfam	UHGV-0200605_3	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0200605_3	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0200605_3	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200605_5	NF041070	N/A	N/A	N/A	N/A
PHROG	UHGV-0200605_8	phrog_6244	51.7	0.000000000000019	N/A	unknown function
eggNOG-mapper	UHGV-0200605_8	1519439.JPJG01000044_gene958	104.0	3.73e-28	N/A	N/A
PHROG	UHGV-0200605_9	phrog_13890	42.8	0.0000000000066	N/A	unknown function
UniRef90	UHGV-0200605_9	UniRef90_A0A416Z7C5	117.0	1.96e-33	Toxin-antitoxin system HicB family antitoxin	N/A
Pfam	UHGV-0200605_9	PF05534	N/A	N/A	HicB family	HicB
structural_annotation	UHGV-0200605_9	PF03869,NF010256	N/A	N/A	N/A	N/A
PHROG	UHGV-0200605_10	phrog_1535	87.4	5.8e-39	tail length tape measure protein	tail
UniRef90	UHGV-0200605_10	UniRef90_A0A810PX76	127.0	6.2e-27	Phage tail tape measure protein	N/A
eggNOG-mapper	UHGV-0200605_10	693746.OBV_18190	137.0	1.17e-30	domain protein	N/A
COG	UHGV-0200605_10	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0200605_10	PF05546,TIGR02559	N/A	N/A	N/A	N/A
PHROG	UHGV-0200605_11	phrog_706	119.1	3.1e-35	N/A	unknown function
UniRef90	UHGV-0200605_11	UniRef90_UPI001D069FB9	213.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-0200605_11	693746.OBV_18170	200.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-0200605_11	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-0200605_11	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0200605_12	phrog_11299	75.4	8.1e-22	N/A	unknown function
eggNOG-mapper	UHGV-0200605_12	693746.OBV_18160	176.0	0	N/A	N/A
structural_annotation	UHGV-0200605_12	PF10666	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200605_17	UniRef90_A0A3D1LEC5	137.0	1.61e-39	VPS37 C-terminal domain-containing protein	N/A
eggNOG-mapper	UHGV-0200605_17	1121396.KB892907_gene4182	52.8	0.000000508	N/A	N/A
structural_annotation	UHGV-0200605_17	PF13022	N/A	N/A	N/A	N/A
PHROG	UHGV-0200605_18	phrog_244	54.6	0.0000000000000026	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0200605_18	742738.HMPREF9460_00725	113.0	2.32e-31	N/A	N/A
KOfam	UHGV-0200605_19	K07505	56.6	3.6e-16	repA; regulatory protein RepA	N/A
PHROG	UHGV-0200605_19	phrog_239	77.5	3.3e-23	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0200605_19	UniRef90_UPI001C123A0E	492.0	0	bifunctional DNA primase/polymerase	N/A
eggNOG-mapper	UHGV-0200605_19	370438.PTH_2877	206.0	0	DNA primase	N/A
Pfam	UHGV-0200605_19	PF13481	N/A	N/A	AAA domain	AAA_25
COG	UHGV-0200605_19	COG0358	N/A	N/A	DNA primase (bacterial type)	N/A
structural_annotation	UHGV-0200605_19	PF03796,MF_04154,TIGR02237,TIGR01391,COG3598,COG4643	N/A	N/A	N/A	N/A
UniRef90	UHGV-0200605_20	UniRef90_UPI001C02DF0D	100.0	1.43e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0200605_20	537007.BLAHAN_06453	48.5	0.00000125	sequence-specific DNA binding	N/A
Pfam	UHGV-0200605_20	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
COG	UHGV-0200605_20	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0200605_20	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0200605	Yes	13,440	52	100	1
UHGV-1480698	No	17,259	53	100	1
UHGV-2174945	No	16,832	52	100	1
UHGV-1968226	No	15,047	52	100	1
UHGV-1974828	No	15,042	52	100	1
UHGV-1497202	No	14,990	52	100	1
UHGV-1416364	No	14,637	52	100	1
UHGV-1411359	No	14,556	52	100	1
UHGV-1492454	No	13,687	52	97	1
UHGV-1546097	No	13,628	52	97	1
UHGV-1409442	No	11,572	53	84	1
UHGV-1409579	No	11,395	53	83	1
UHGV-1409582	No	11,395	53	83	1
UHGV-2158710	No	10,801	52	78	1
UHGV-1487047	No	9,968	53	71	1
UHGV-1463854	No	7,891	51	61	1
UHGV-1480014	No	8,007	55	57	1