vOTU vOTU-008610

vOTU: vOTU-008610

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-008610
Number of genomes	8
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00146 → vGENUS-00447 → vSUBGEN-35017 → vOTU-008610
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1983232
Biosample ID	SAMEA2580249
Genome length (bp)	35,014 bps
CheckV completeness	99.90% (High-quality)
CDS count	56
CDS density	91.85%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	708	Host agreement	85.17
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Agathobacter → Agathobacter rectalis	Total connections	684	Host agreement	92.69

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1983232_1	K07273	151.6	7.00649e-45	acm; lysozyme	N/A
PHROG	UHGV-1983232_1	phrog_291	125.6	4.9e-37	endolysin	lysis
UniRef90	UHGV-1983232_1	UniRef90_A0A174GRH8	489.0	0	Autolytic lysozyme	N/A
eggNOG-mapper	UHGV-1983232_1	397287.C807_01339	221.0	0	Glycosyl hydrolases family 25	N/A
Pfam	UHGV-1983232_1	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1983232_1	COG0791	N/A	N/A	Cell wall-associated hydrolase, NlpC_P60 family	N/A
structural_annotation	UHGV-1983232_1	PF01183,PF01471,MF_02227,NF007360,COG3757,COG3409	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_4	phrog_24103	82.2	2.9e-25	N/A	unknown function
eggNOG-mapper	UHGV-1983232_4	411473.RUMCAL_00420	85.5	8.44e-16	nuclear chromosome segregation	N/A
COG	UHGV-1983232_4	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
COG	UHGV-1983232_5	COG1262	N/A	N/A	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	N/A
PHROG	UHGV-1983232_6	phrog_15594	84.5	8.3e-25	N/A	unknown function
eggNOG-mapper	UHGV-1983232_6	862969.SCI_1223	56.6	0.00000000401	N/A	N/A
structural_annotation	UHGV-1983232_6	PF16640,TIGR04488	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1983232_7	1235798.C817_04596	67.4	0.000000000122	the current gene model (or a revised gene model) may contain a frame shift	N/A
COG	UHGV-1983232_7	COG4675	N/A	N/A	Phage tail collar domain	N/A
PHROG	UHGV-1983232_8	phrog_11037	145.7	3.89561e-43	N/A	unknown function
UniRef90	UHGV-1983232_8	UniRef90_A0A0M6WKQ1	366.0	0	Phage_lysozyme2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1983232_8	33035.JPJF01000023_gene3229	170.0	0	N/A	N/A
Pfam	UHGV-1983232_8	PF18013	N/A	N/A	Phage tail lysozyme	Phage_lysozyme2
structural_annotation	UHGV-1983232_8	PF18013	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_9	phrog_13289	372.6	0	tail protein	tail
UniRef90	UHGV-1983232_9	UniRef90_A0A0M6WI67	1186.0	0	Prophage_tail domain-containing protein	N/A
eggNOG-mapper	UHGV-1983232_9	1235798.C817_02568	446.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-1983232_9	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-1983232_9	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-1983232_9	COG2885	N/A	N/A	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	N/A
structural_annotation	UHGV-1983232_9	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_10	phrog_33	58.7	1.4e-16	distal tail protein Dit	tail
UniRef90	UHGV-1983232_10	UniRef90_A0A350VIV2	355.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1983232_10	1232452.BAIB02000007_gene1615	215.0	0	phage tail	N/A
NCBIFam	UHGV-1983232_10	TIGR01633.1	N/A	N/A	distal tail protein Dit	N/A
COG	UHGV-1983232_10	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-1983232_10	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_11	phrog_23464	186.4	0	N/A	unknown function
eggNOG-mapper	UHGV-1983232_11	1232452.BAIB02000007_gene1616	425.0	0	phage tail tape measure protein	N/A
COG	UHGV-1983232_11	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
PHROG	UHGV-1983232_13	phrog_88	107.4	1.1e-31	major tail protein	tail
UniRef90	UHGV-1983232_13	UniRef90_A0A1Q9J4Y1	276.0	0	Phage tail protein	N/A
eggNOG-mapper	UHGV-1983232_13	1487921.DP68_11355	54.3	0.0000021	phage major tail protein	N/A
NCBIFam	UHGV-1983232_13	TIGR01603.1	N/A	N/A	major tail protein	N/A
COG	UHGV-1983232_13	COG5492	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1983232_13	PF04630,TIGR01603,COG3498	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_14	phrog_5	56.2	9.3e-16	tail completion or Neck1 protein	connector
UniRef90	UHGV-1983232_14	UniRef90_D4M595	169.0	0	Phage protein, HK97 gp10 family	N/A
NCBIFam	UHGV-1983232_14	TIGR01725.1	N/A	N/A	HK97-gp10 family putative phage morphogenesis protein	N/A
structural_annotation	UHGV-1983232_14	TIGR01725,COG5005	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1983232_15	PF05657	N/A	N/A	N/A	N/A
UniRef90	UHGV-1983232_16	UniRef90_A0A844KCF4	191.0	0	Phage head closure protein	N/A
structural_annotation	UHGV-1983232_16	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_18	phrog_10	75.0	7.4e-22	major head protein	head and packaging
UniRef90	UHGV-1983232_18	UniRef90_D4M591	642.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-1983232_18	1232452.BAIB02000007_gene1625	484.0	0	Phage capsid family	N/A
Pfam	UHGV-1983232_18	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-1983232_18	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-1983232_18	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-1983232_18	PF05065,TIGR01554,COG4653	N/A	N/A	N/A	N/A
KOfam	UHGV-1983232_19	K01358	109.4	4.6e-32	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-1983232_19	phrog_94	179.5	0	head maturation protease	head and packaging
UniRef90	UHGV-1983232_19	UniRef90_A0A350VIU3	501.0	0	ATP-dependent Clp protease proteolytic subunit (Fragment)	N/A
eggNOG-mapper	UHGV-1983232_19	1235792.C808_00085	205.0	0	Clp protease	N/A
Pfam	UHGV-1983232_19	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-1983232_19	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-1983232_19	PF00574,MF_00444,TIGR00493,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_20	phrog_12	80.0	2.1e-23	portal protein	head and packaging
UniRef90	UHGV-1983232_20	UniRef90_A0A844KEF3	551.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1983232_20	1232452.BAIB02000007_gene1627	282.0	0	Phage portal protein, HK97 family	N/A
Pfam	UHGV-1983232_20	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-1983232_20	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-1983232_20	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_21	phrog_9	247.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-1983232_21	UniRef90_D4M588	1017.0	0	Phage terminase-like protein, large subunit	N/A
eggNOG-mapper	UHGV-1983232_21	1232452.BAIB02000007_gene1629	534.0	0	Phage terminase-like protein large subunit	N/A
Pfam	UHGV-1983232_21	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-1983232_21	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-1983232_21	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-1983232_21	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_22	phrog_5110	97.6	7.5e-29	terminase small subunit	head and packaging
UniRef90	UHGV-1983232_22	UniRef90_A0A1C5LZF0	104.0	1.14e-26	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-1983232_22	349161.Dred_2608	80.1	3.32e-18	N/A	N/A
Pfam	UHGV-1983232_22	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
structural_annotation	UHGV-1983232_22	PF05119,TIGR01558,COG3747	N/A	N/A	N/A	N/A
KOfam	UHGV-1983232_23	K07451	44.8	0.0000000000023	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-1983232_23	phrog_119	79.1	5.8e-23	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1983232_23	UniRef90_A0A0M6WIX4	214.0	0	HNHc domain-containing protein	N/A
eggNOG-mapper	UHGV-1983232_23	1405.DJ92_863	92.4	5.72e-23	HNH endonuclease	N/A
Pfam	UHGV-1983232_23	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1983232_23	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-1983232_24	phrog_36	60.4	3.4e-17	transcriptional regulator	transcription regulation
UniRef90	UHGV-1983232_24	UniRef90_UPI001D05F87A	72.4	0.000000000000125	RNA polymerase subunit sigma-24	N/A
eggNOG-mapper	UHGV-1983232_24	588581.Cpap_2562	61.6	0.00000000045	N/A	N/A
structural_annotation	UHGV-1983232_24	PF07374,MF_00674,NF001074	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_25	phrog_3584	237.2	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1983232_25	UniRef90_A0A4P8IFK4	187.0	0	N/A	N/A
eggNOG-mapper	UHGV-1983232_25	411902.CLOBOL_03891	384.0	0	N/A	N/A
structural_annotation	UHGV-1983232_25	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_31	phrog_21026	58.5	1.4e-16	N/A	unknown function
structural_annotation	UHGV-1983232_31	PF21744	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_34	phrog_15077	99.9	1.4e-29	N/A	unknown function
UniRef90	UHGV-1983232_34	UniRef90_UPI001D0741A0	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-1983232_34	97139.C824_05986	333.0	0	N/A	N/A
structural_annotation	UHGV-1983232_34	PF11300,NF033725	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_35	phrog_8470	292.6	0	N/A	unknown function
UniRef90	UHGV-1983232_35	UniRef90_UPI001D08730A	533.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1983232_35	1235792.C808_00066	550.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1983232_35	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1983232_35	PF14284,NF008072	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_36	phrog_8470	46.8	0.0000000000003	N/A	unknown function
eggNOG-mapper	UHGV-1983232_36	1235792.C808_00066	335.0	0	PcfJ-like protein	N/A
eggNOG-mapper	UHGV-1983232_37	1235792.C808_00065	243.0	0	N/A	N/A
UniRef90	UHGV-1983232_38	UniRef90_A0A417WAJ1	117.0	6.71e-32	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1983232_38	1235800.C819_02254	121.0	5.46e-34	HNH nucleases	N/A
structural_annotation	UHGV-1983232_41	PF18066,NF007780,COG1544	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_42	phrog_585	105.8	3.1e-31	N/A	unknown function
UniRef90	UHGV-1983232_42	UniRef90_UPI00035CA235	133.0	8.9e-38	N/A	N/A
eggNOG-mapper	UHGV-1983232_42	1033744.CAEL01000029_gene1306	132.0	1.44e-37	N/A	N/A
Pfam	UHGV-1983232_42	PF10711	N/A	N/A	N/A	DUF2513
structural_annotation	UHGV-1983232_42	PF10711,MF_01819,TIGR03433,COG3432	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1983232_44	PF09486,TIGR03090,COG5420	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_45	phrog_9607	105.6	4.6e-31	N/A	unknown function
eggNOG-mapper	UHGV-1983232_45	1304866.K413DRAFT_4639	112.0	5.46e-29	N/A	N/A
structural_annotation	UHGV-1983232_45	PF02883,MF_00791,NF012200,COG3354	N/A	N/A	N/A	N/A
UniRef90	UHGV-1983232_50	UniRef90_A0A0M6WGZ2	135.0	1.84e-40	HTH_7 domain-containing protein	N/A
eggNOG-mapper	UHGV-1983232_50	887929.HMP0721_1290	81.6	1.27e-19	Helix-turn-helix domain of resolvase	N/A
Pfam	UHGV-1983232_50	PF02796	N/A	N/A	Helix-turn-helix domain of resolvase	HTH_7
structural_annotation	UHGV-1983232_50	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
KOfam	UHGV-1983232_51	K22300	50.6	0.000000000000042	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-1983232_51	phrog_2967	44.3	0.0000000000027	transcriptional regulator	transcription regulation
UniRef90	UHGV-1983232_51	UniRef90_A0A0M6WGY8	239.0	0	HTH cro/C1-type domain-containing protein	N/A
eggNOG-mapper	UHGV-1983232_51	642492.Clole_2801	85.5	2.44e-19	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1983232_51	PF12844	N/A	N/A	Helix-turn-helix domain	HTH_19
COG	UHGV-1983232_51	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1983232_51	PF01381,MF_02017,NF041951,COG1396	N/A	N/A	N/A	N/A
PHROG	UHGV-1983232_53	phrog_2158	162.0	0	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1983232_53	UniRef90_UPI000E5D2F29	366.0	0	Abi family protein	N/A
eggNOG-mapper	UHGV-1983232_53	626523.GCWU000342_01051	229.0	0	Abi-like protein	N/A
PADLOC	UHGV-1983232_53	AbiD	113.0	5.9e-33	AbiD	Abi
Pfam	UHGV-1983232_53	PF07751	N/A	N/A	Abi-like protein	Abi_2
COG	UHGV-1983232_53	COG4823	N/A	N/A	Abortive infection bacteriophage resistance protein	N/A
structural_annotation	UHGV-1983232_53	PF07751,COG4823	N/A	N/A	N/A	N/A
KOfam	UHGV-1983232_54	K06400	320.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1983232_54	phrog_95	347.6	0	integrase	integration and excision
UniRef90	UHGV-1983232_54	UniRef90_B0NAW3	618.0	0	DNA-invertase hin	N/A
eggNOG-mapper	UHGV-1983232_54	411468.CLOSCI_00582	618.0	0	Recombinase	N/A
Pfam	UHGV-1983232_54	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1983232_54	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1983232_54	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1983232_54	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1983232_54	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1983232_55	UniRef90_R5QKX6	68.2	0.0000000000000963	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-1983232_55	1280698.AUJS01000002_gene2767	79.0	1.86e-16	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-1983232_55	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
KOfam	UHGV-1983232_56	K00147	440.3	0	proA; glutamate-5-semialdehyde dehydrogenase [EC:1.2.1.41]	N/A
PHROG	UHGV-1983232_56	phrog_13417	270.9	0	N/A	unknown function
UniRef90	UHGV-1983232_56	UniRef90_C4Z9V4	498.0	0	Gamma-glutamyl phosphate reductase	N/A
eggNOG-mapper	UHGV-1983232_56	1410625.JHWK01000003_gene1743	353.0	0	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate	N/A
Pfam	UHGV-1983232_56	PF00171	N/A	N/A	Aldehyde dehydrogenase family	Aldedh
NCBIFam	UHGV-1983232_56	NF001221.0	N/A	N/A	glutamate-5-semialdehyde dehydrogenase	N/A
COG	UHGV-1983232_56	COG0014	N/A	N/A	Gamma-glutamyl phosphate reductase	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1983232	Yes	35,014	41	100	1
UHGV-0074413	No	35,612	41	100	1
UHGV-0060747	No	34,836	41	100	1
UHGV-1530565	No	34,180	41	98	1
UHGV-1512550	No	33,126	41	95	1
UHGV-0166910	No	32,385	41	93	1
UHGV-1450558	No	26,689	41	76	1
UHGV-1725071	No	13,217	43	38	1