vOTU vOTU-008977

vOTU: vOTU-008977

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-008977
Number of genomes	12
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00027 → vGENUS-13312 → vSUBGEN-21272 → vOTU-008977
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955
Host range breadth	Species
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1444201
Biosample ID	N/A
Genome length (bp)	36,949 bps
CheckV completeness	99.90% (High-quality)
CDS count	53
CDS density	90.86%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	655	Host agreement	89.31
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E sp003526955	Total connections	176	Host agreement	97.16

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1444201_1	K14059	208.6	0	int; integrase	N/A
PHROG	UHGV-1444201_1	phrog_1	205.4	0	integrase	integration and excision
UniRef90	UHGV-1444201_1	UniRef90_UPI001899FB9B	728.0	0	tyrosine-type recombinase/integrase	N/A
eggNOG-mapper	UHGV-1444201_1	1507.HMPREF0262_00307	184.0	0	Phage integrase family	N/A
Pfam	UHGV-1444201_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1444201_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1444201_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1444201_2	UniRef90_A0A348ZC97	349.0	0	UDP-N-acetylglucosamine kinase	N/A
eggNOG-mapper	UHGV-1444201_2	877411.JMMA01000002_gene2552	199.0	0	zeta toxin	N/A
Pfam	UHGV-1444201_2	PF06414	N/A	N/A	Zeta toxin	Zeta_toxin
COG	UHGV-1444201_2	COG4185	N/A	N/A	Predicted ABC-type ATPase or kinase	N/A
structural_annotation	UHGV-1444201_2	PF06414,MF_00234,NF041574,COG4185	N/A	N/A	N/A	N/A
KOfam	UHGV-1444201_3	K07728	43.5	0.0000000000021	K07728; putative transcriptional regulator	N/A
PHROG	UHGV-1444201_3	phrog_2439	334.6	0	transcriptional regulator	transcription regulation
UniRef90	UHGV-1444201_3	UniRef90_UPI00164BBB9D	393.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-1444201_3	536233.CLO_1870	280.0	0	IrrE N-terminal-like domain	N/A
Pfam	UHGV-1444201_3	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1444201_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1444201_3	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-1444201_3	PF06114,PF01381,MF_00584,NF038139,COG2856,COG1476	N/A	N/A	N/A	N/A
KOfam	UHGV-1444201_5	K01356	189.7	0	lexA; repressor LexA [EC:3.4.21.88]	N/A
PHROG	UHGV-1444201_5	phrog_4	124.8	0	transcriptional repressor	transcription regulation
UniRef90	UHGV-1444201_5	UniRef90_R6N9Z1	296.0	0	SOS-response transcriptional repressors (RecA-mediated autopeptidases)	N/A
eggNOG-mapper	UHGV-1444201_5	411473.RUMCAL_03095	181.0	0	N/A	N/A
Pfam	UHGV-1444201_5	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
Pfam	UHGV-1444201_5	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
Pfam	UHGV-1444201_5	PF00717	N/A	N/A	Peptidase S24-like	Peptidase_S24
NCBIFam	UHGV-1444201_5	TIGR00498.1	N/A	N/A	transcriptional repressor LexA	N/A
COG	UHGV-1444201_5	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
structural_annotation	UHGV-1444201_5	PF00717,PF01381,MF_00015,MF_00535,TIGR00498,NF041951,COG1974	N/A	N/A	N/A	N/A
UniRef90	UHGV-1444201_6	UniRef90_R6R5I8	57.4	0.00000000192	HTH cro/C1-type domain-containing protein	N/A
Pfam	UHGV-1444201_6	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1444201_6	PF21291,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_17	phrog_674	159.4	0	N/A	unknown function
UniRef90	UHGV-1444201_17	UniRef90_A0A374N9T8	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-1444201_17	1408437.JNJN01000039_gene373	184.0	0	N/A	N/A
Pfam	UHGV-1444201_17	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1444201_17	PF07083	N/A	N/A	N/A	N/A
KOfam	UHGV-1444201_18	K07455	197.1	0	recT; recombination protein RecT	N/A
PHROG	UHGV-1444201_18	phrog_148	210.3	0	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1444201_18	UniRef90_A0A374N9W0	508.0	0	Recombinase	N/A
eggNOG-mapper	UHGV-1444201_18	428127.EUBDOL_01509	280.0	0	RecT family	N/A
Pfam	UHGV-1444201_18	PF03837	N/A	N/A	RecT family	RecT
NCBIFam	UHGV-1444201_18	TIGR00616.1	N/A	N/A	recombinase, phage RecT family	N/A
COG	UHGV-1444201_18	COG3723	N/A	N/A	Recombinational DNA repair protein RecT	N/A
structural_annotation	UHGV-1444201_18	PF03837,TIGR00616,COG3723	N/A	N/A	N/A	N/A
KOfam	UHGV-1444201_19	K06167	54.7	0.0000000000000016	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	N/A
PHROG	UHGV-1444201_19	phrog_392	126.1	3.3e-37	metal-dependent hydrolase	other
UniRef90	UHGV-1444201_19	UniRef90_A0A373XYI8	349.0	0	MBL fold metallo-hydrolase	N/A
eggNOG-mapper	UHGV-1444201_19	665956.HMPREF1032_03101	154.0	3.36312e-44	May be involved in the transport of PQQ or its precursor to the periplasm	N/A
Pfam	UHGV-1444201_19	PF12706	N/A	N/A	Beta-lactamase superfamily domain	Lactamase_B_2
COG	UHGV-1444201_19	COG1235	N/A	N/A	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	N/A
structural_annotation	UHGV-1444201_19	PF12706,MF_01818,TIGR03307,COG1234	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_20	phrog_398	208.2	0	N/A	unknown function
UniRef90	UHGV-1444201_20	UniRef90_UPI000C7B20DA	192.0	0	putative HNHc nuclease	N/A
eggNOG-mapper	UHGV-1444201_20	293826.Amet_2584	176.0	0	Putative HNHc nuclease	N/A
Pfam	UHGV-1444201_20	PF16784	N/A	N/A	Putative HNHc nuclease	HNHc_6
structural_annotation	UHGV-1444201_20	PF16784	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_21	phrog_2562	127.9	1e-37	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1444201_21	UniRef90_A0A374NA85	483.0	0	N/A	N/A
eggNOG-mapper	UHGV-1444201_21	1235790.C805_00030	148.0	4.16001e-40	N/A	N/A
Pfam	UHGV-1444201_21	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1444201_21	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1444201_21	PF14297	N/A	N/A	N/A	N/A
KOfam	UHGV-1444201_22	K02315	134.9	7.4e-40	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1444201_22	phrog_50	136.7	1.8e-40	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1444201_22	UniRef90_A0A374MYR7	407.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1444201_22	445972.ANACOL_01829	197.0	0	N/A	N/A
Pfam	UHGV-1444201_22	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1444201_22	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
structural_annotation	UHGV-1444201_22	PF01695,MF_01158,NF005378,COG1484	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_23	phrog_2045	43.0	0.0000000000035	N/A	unknown function
eggNOG-mapper	UHGV-1444201_23	1235793.C809_02199	106.0	2.41e-23	N/A	N/A
Pfam	UHGV-1444201_23	PF07505	N/A	N/A	N/A	DUF5131
COG	UHGV-1444201_23	COG4422	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1444201_23	PF07505,TIGR04471,COG4422	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_24	phrog_824	139.5	1.10002e-41	N/A	unknown function
UniRef90	UHGV-1444201_24	UniRef90_A0A374MXE9	202.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-1444201_24	97139.C824_00735	130.0	5.78e-37	VRR-NUC domain	N/A
Pfam	UHGV-1444201_24	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-1444201_24	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_25	phrog_323	71.5	5.9e-27	endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1444201_25	UniRef90_UPI001C01CFF8	315.0	0	SANT/Myb domain-containing protein	N/A
eggNOG-mapper	UHGV-1444201_25	756499.Desde_1065	351.0	0	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	N/A
dbAPIS	UHGV-1444201_25	APIS006	N/A	N/A	Trigger programmed cell death (PCD) by P4 prophage.	N/A
structural_annotation	UHGV-1444201_25	PF11112,NF040595	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_26	phrog_2118	124.5	8e-37	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1444201_26	UniRef90_R6QZD0	222.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-1444201_26	610130.Closa_0730	164.0	0	HNH endonuclease	N/A
Pfam	UHGV-1444201_26	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-1444201_26	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-1444201_26	PF13395,TIGR02646,COG1403	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1444201_30	1540257.JQMW01000004_gene433	49.7	0.00000716	N/A	N/A
structural_annotation	UHGV-1444201_30	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_31	phrog_3634	124.0	1.4e-36	N/A	unknown function
eggNOG-mapper	UHGV-1444201_31	411459.RUMOBE_00941	197.0	0	COG NOG22561 non supervised orthologous group	N/A
COG	UHGV-1444201_31	COG0457	N/A	N/A	Tetratricopeptide (TPR) repeat	N/A
structural_annotation	UHGV-1444201_31	PF10137,MF_03036,TIGR03646,COG4271	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_32	phrog_309	146.3	5.46506e-44	terminase small subunit	head and packaging
UniRef90	UHGV-1444201_32	UniRef90_UPI001A9BCC34	224.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1444201_32	693746.OBV_18020	146.0	4.55422e-43	transposase activity	N/A
COG	UHGV-1444201_32	COG2963	N/A	N/A	Transposase InsE and inactivated derivatives	N/A
structural_annotation	UHGV-1444201_32	PF07141	N/A	N/A	N/A	N/A
KOfam	UHGV-1444201_33	K06909	79.2	5.2e-23	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1444201_33	phrog_2	86.0	6.3e-25	terminase large subunit	head and packaging
UniRef90	UHGV-1444201_33	UniRef90_UPI00189AB5B3	863.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1444201_33	1304866.K413DRAFT_3034	610.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1444201_33	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1444201_33	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1444201_33	PF04466,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_34	phrog_533	331.6	0	portal protein	head and packaging
UniRef90	UHGV-1444201_34	UniRef90_UPI00189C53D6	867.0	0	phage capsid protein	N/A
eggNOG-mapper	UHGV-1444201_34	1304866.K413DRAFT_3035	476.0	0	N/A	N/A
structural_annotation	UHGV-1444201_34	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_35	phrog_581	307.4	0	minor head protein	head and packaging
UniRef90	UHGV-1444201_35	UniRef90_UPI001897AC3D	975.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1444201_35	658655.HMPREF0988_02563	349.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-1444201_35	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1444201_35	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1444201_35	PF06152,TIGR01641	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_37	phrog_194	101.9	7.5e-30	head scaffolding protein	head and packaging
UniRef90	UHGV-1444201_37	UniRef90_UPI0018995066	345.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-1444201_37	742765.HMPREF9457_02126	166.0	0	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1444201_37	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1444201_37	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_38	phrog_422	231.9	0	major head protein	head and packaging
eggNOG-mapper	UHGV-1444201_38	693746.OBV_18090	382.0	0	N/A	N/A
structural_annotation	UHGV-1444201_38	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_39	phrog_541	79.7	3.1e-23	head-tail adaptor	connector
eggNOG-mapper	UHGV-1444201_39	1449050.JNLE01000003_gene3888	79.7	1.32e-17	N/A	N/A
PHROG	UHGV-1444201_40	phrog_3366	66.3	3.9e-19	N/A	unknown function
Pfam	UHGV-1444201_40	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1444201_40	PF20536,TIGR01563	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_41	phrog_556	111.3	3e-33	minor head protein	head and packaging
UniRef90	UHGV-1444201_41	UniRef90_UPI00189BC4F9	325.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-1444201_41	1449050.JNLE01000003_gene3886	153.0	1.4013e-45	N/A	N/A
Pfam	UHGV-1444201_41	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-1444201_41	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_42	phrog_3266	96.5	2.1e-28	tail completion	connector
eggNOG-mapper	UHGV-1444201_42	1449050.JNLE01000003_gene3885	143.0	4.60046e-42	N/A	N/A
structural_annotation	UHGV-1444201_42	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_43	phrog_3099	145.3	2.70451e-43	N/A	unknown function
eggNOG-mapper	UHGV-1444201_43	1160721.RBI_II00532	234.0	0	N/A	N/A
structural_annotation	UHGV-1444201_43	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_44	phrog_11299	114.5	7.7e-34	N/A	unknown function
eggNOG-mapper	UHGV-1444201_44	1449050.JNLE01000003_gene3883	69.3	0.000000000000543	N/A	N/A
structural_annotation	UHGV-1444201_44	PF10666	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_45	phrog_706	141.9	3.59994e-42	N/A	unknown function
UniRef90	UHGV-1444201_45	UniRef90_UPI001B3C82AE	256.0	0	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1444201_45	1160721.RBI_II00530	198.0	0	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1444201_45	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1444201_45	PF06854	N/A	N/A	N/A	N/A
UniRef90	UHGV-1444201_46	UniRef90_A0A174ZSI5	85.9	4.12e-17	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1444201_46	1179226.AJXO01000005_gene1853	54.7	0.00000681	Phage minor capsid protein 2	N/A
UniRef90	UHGV-1444201_47	UniRef90_UPI0013798457	73.2	5.35e-16	ribbon-helix-helix protein, CopG family	N/A
eggNOG-mapper	UHGV-1444201_47	1235793.C809_02220	68.6	0.00000000000000607	N/A	N/A
structural_annotation	UHGV-1444201_47	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_49	phrog_1760	131.2	8.1e-39	anti-termination protein	transcription regulation
UniRef90	UHGV-1444201_49	UniRef90_UPI00189A9092	328.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1444201_49	929506.CbC4_1188	137.0	1.1e-37	ORF6N domain	N/A
Pfam	UHGV-1444201_49	PF10543	N/A	N/A	ORF6N domain	ORF6N
COG	UHGV-1444201_49	COG3646	N/A	N/A	Phage regulatory protein Rha	N/A
PHROG	UHGV-1444201_50	phrog_1535	303.6	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1444201_50	33035.JPJF01000093_gene2243	325.0	0	phage tail tape measure protein	N/A
COG	UHGV-1444201_50	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1444201_50	PF20155,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_51	phrog_1194	61.6	1.2e-17	N/A	unknown function
eggNOG-mapper	UHGV-1444201_51	397290.C810_05238	96.7	9.01e-24	N/A	N/A
Pfam	UHGV-1444201_51	PF20458	N/A	N/A	N/A	DUF6711
structural_annotation	UHGV-1444201_51	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_52	phrog_18190	74.6	1.6e-31	N/A	unknown function
UniRef90	UHGV-1444201_52	UniRef90_UPI001C01E293	72.8	0.000000000478	tail fiber domain-containing protein	N/A
eggNOG-mapper	UHGV-1444201_52	483218.BACPEC_01143	79.7	0.000000000000428	N/A	N/A
structural_annotation	UHGV-1444201_52	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
PHROG	UHGV-1444201_53	phrog_2012	40.1	0.000000000029	minor tail protein	tail

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1444201	Yes	36,949	38	100	1
UHGV-1983227	No	45,724	38	100	1
UHGV-2141050	No	41,024	38	100	1
UHGV-0074415	No	40,778	38	100	1
UHGV-0166520	No	21,722	40	56	1
UHGV-0337349	No	19,847	40	54	1
UHGV-1459925	No	20,680	41	53	1
UHGV-0193918	No	20,502	40	52	1
UHGV-1461596	No	20,454	40	52	1
UHGV-0091177	No	12,658	41	32	1
UHGV-1681926	No	12,658	41	32	1
UHGV-0176593	No	11,950	41	30	1