vOTU vOTU-009022

vOTU: vOTU-009022

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-009022
Number of genomes	18
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00604 → vGENUS-02725 → vSUBGEN-26402 → vOTU-009022
Host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1518200
Biosample ID	SAMEA2155512
Genome length (bp)	36,469 bps
CheckV completeness	96.56% (High-quality)
CDS count	66
CDS density	91.24%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000	Total connections	25	Host agreement	88
PHIST-predicted host lineage	Bacteria → Firmicutes → Bacilli → RF39 → UBA660 → CAG-1000 → CAG-1000 sp000434555	Total connections	18	Host agreement	88.89

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 96.56)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1518200_1	phrog_1281	123.1	1.4e-36	N/A	unknown function
UniRef90	UHGV-1518200_1	UniRef90_A0A2H0RA90	91.3	1.5e-20	N/A	N/A
eggNOG-mapper	UHGV-1518200_1	683083.C414_000470009	82.8	3.32e-18	N/A	N/A
Pfam	UHGV-1518200_1	PF13274	N/A	N/A	Antitoxin SocA-like, Panacea domain	SocA_Panacea
COG	UHGV-1518200_1	COG3600	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518200_1	PF13274,COG3600	N/A	N/A	N/A	N/A
KOfam	UHGV-1518200_2	K08640	87.3	2.7e-25	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	N/A
PHROG	UHGV-1518200_2	phrog_894	74.5	1.5e-21	endolysin	lysis
UniRef90	UHGV-1518200_2	UniRef90_A0A853JTG8	82.8	3.61e-16	Peptidase M15	N/A
eggNOG-mapper	UHGV-1518200_2	903814.ELI_0060	86.3	1.1e-17	Peptidase M15	N/A
Pfam	UHGV-1518200_2	PF08291	N/A	N/A	Peptidase M15	Peptidase_M15_3
COG	UHGV-1518200_2	COG3108	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518200_3	PF06946	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_5	phrog_372	204.3	0	tail protein	tail
UniRef90	UHGV-1518200_5	UniRef90_UPI001E5C78A4	100.0	2.88e-18	N/A	N/A
eggNOG-mapper	UHGV-1518200_5	658655.HMPREF0988_00525	91.7	2.17e-16	the current gene model (or a revised gene model) may contain a frame shift	N/A
Pfam	UHGV-1518200_5	PF05895	N/A	N/A	N/A	DUF859
COG	UHGV-1518200_5	COG4675	N/A	N/A	Phage tail collar domain	N/A
structural_annotation	UHGV-1518200_5	PF05895,PF00386,MF_04116,NF010681,COG1361	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_6	phrog_6616	66.8	2.2e-20	tail protein	tail
eggNOG-mapper	UHGV-1518200_6	1305708.M9Q2I5_9CAUD	66.6	0.0000000163	peptidoglycan catabolic process	N/A
structural_annotation	UHGV-1518200_6	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_7	phrog_1194	63.9	2.3e-18	N/A	unknown function
structural_annotation	UHGV-1518200_7	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_8	phrog_1535	195.4	0	tail length tape measure protein	tail
UniRef90	UHGV-1518200_8	UniRef90_R5A122	755.0	0	ETS domain-containing protein	N/A
eggNOG-mapper	UHGV-1518200_8	645991.Sgly_0352	382.0	0	SLT domain	N/A
COG	UHGV-1518200_8	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
PHROG	UHGV-1518200_9	phrog_8355	83.3	1.3e-24	N/A	unknown function
UniRef90	UHGV-1518200_9	UniRef90_UPI001ADD7ADE	71.2	0.0000000000000747	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1518200_9	1123263.AUKY01000051_gene1072	72.0	0.00000000000000486	N/A	N/A
Pfam	UHGV-1518200_9	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
PHROG	UHGV-1518200_10	phrog_8300	78.4	7.7e-23	N/A	unknown function
eggNOG-mapper	UHGV-1518200_10	1507.HMPREF0262_01185	53.5	0.000000119	N/A	N/A
structural_annotation	UHGV-1518200_10	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_11	phrog_820	81.2	1.2e-23	major tail protein	tail
UniRef90	UHGV-1518200_11	UniRef90_R6DLA9	103.0	5.16e-25	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1518200_11	1282664.H354_06691	109.0	1.71e-28	N/A	N/A
Pfam	UHGV-1518200_11	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
structural_annotation	UHGV-1518200_11	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_12	phrog_2595	61.4	1.5e-17	head-tail connector protein	connector
UniRef90	UHGV-1518200_12	UniRef90_UPI0016BCEC89	90.5	7.74e-21	minor capsid protein	N/A
eggNOG-mapper	UHGV-1518200_12	1151292.QEW_2427	95.5	1.41e-23	N/A	N/A
Pfam	UHGV-1518200_12	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1518200_12	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_13	phrog_556	46.3	0.00000000000057	minor head protein	head and packaging
UniRef90	UHGV-1518200_13	UniRef90_UPI00058FDD53	97.1	2.91e-23	minor capsid protein	N/A
eggNOG-mapper	UHGV-1518200_13	742740.HMPREF9474_03509	92.8	2.17e-22	N/A	N/A
PHROG	UHGV-1518200_14	phrog_8710	127.7	3.7e-38	N/A	unknown function
eggNOG-mapper	UHGV-1518200_14	1304866.K413DRAFT_0782	78.2	3.57e-17	N/A	N/A
structural_annotation	UHGV-1518200_14	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_15	phrog_541	89.3	3.3e-26	head-tail adaptor	connector
eggNOG-mapper	UHGV-1518200_15	483218.BACPEC_01153	88.6	6.62e-21	N/A	N/A
PHROG	UHGV-1518200_18	phrog_422	236.5	0	major head protein	head and packaging
UniRef90	UHGV-1518200_18	UniRef90_W0U896	386.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-1518200_18	1160721.RBI_II00538	386.0	0	N/A	N/A
structural_annotation	UHGV-1518200_18	PF21703,MF_04119,TIGR04387,COG4834	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_19	phrog_2303	81.8	1.1e-23	head scaffolding protein	head and packaging
structural_annotation	UHGV-1518200_19	MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_22	phrog_581	134.7	0	minor head protein	head and packaging
UniRef90	UHGV-1518200_22	UniRef90_R5A5Z0	939.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1518200_22	1151292.QEW_4396	263.0	0	COG3209 Rhs family protein	N/A
Pfam	UHGV-1518200_22	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-1518200_22	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1518200_22	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_24	phrog_533	245.8	0	portal protein	head and packaging
UniRef90	UHGV-1518200_24	UniRef90_R5A3Z5	980.0	0	Putative phage minor capsid protein	N/A
eggNOG-mapper	UHGV-1518200_24	1117108.PAALTS15_13582	439.0	0	N/A	N/A
structural_annotation	UHGV-1518200_24	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
UniRef90	UHGV-1518200_25	UniRef90_R5A0K2	961.0	0	Putative phage terminase large subunit	N/A
eggNOG-mapper	UHGV-1518200_25	645991.Sgly_0335	478.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-1518200_25	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1518200_25	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_26	phrog_2412	64.9	1.1e-18	N/A	unknown function
UniRef90	UHGV-1518200_26	UniRef90_R5AAQ5	243.0	0	N/A	N/A
eggNOG-mapper	UHGV-1518200_26	1122981.AUME01000026_gene531	69.3	0.000000000000358	N/A	N/A
structural_annotation	UHGV-1518200_27	PF15456	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_28	phrog_20735	182.6	0	N/A	unknown function
UniRef90	UHGV-1518200_28	UniRef90_R5A140	393.0	0	RNA_ligase domain-containing protein	N/A
Pfam	UHGV-1518200_28	PF09414	N/A	N/A	RNA ligase	RNA_ligase
structural_annotation	UHGV-1518200_28	PF09414,MF_04150,TIGR01209,COG1423	N/A	N/A	N/A	N/A
KOfam	UHGV-1518200_29	K14415	340.1	0	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	N/A
PHROG	UHGV-1518200_29	phrog_1075	440.3	0	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518200_29	UniRef90_A0A350S1Q4	535.0	0	RNA-splicing ligase RtcB	N/A
eggNOG-mapper	UHGV-1518200_29	1410653.JHVC01000007_gene540	497.0	0	tRNA-splicing ligase RtcB	N/A
Pfam	UHGV-1518200_29	PF01139	N/A	N/A	tRNA-splicing ligase RtcB	RtcB
COG	UHGV-1518200_29	COG1690	N/A	N/A	RNA-splicing ligase RtcB, repairs tRNA damage	N/A
structural_annotation	UHGV-1518200_29	PF01139,MF_03144,NF007153,COG1690	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_41	phrog_478	127.4	5.4e-38	site-specific recombination directionality factor RDF	integration and excision
eggNOG-mapper	UHGV-1518200_41	1110697.NCAST_08_01370	110.0	1.92e-29	N/A	N/A
PHROG	UHGV-1518200_44	phrog_7839	70.1	2.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1518200_44	202954.BBNK01000034_gene3794	111.0	9.77e-30	N/A	N/A
structural_annotation	UHGV-1518200_45	PF09947	N/A	N/A	N/A	N/A
KOfam	UHGV-1518200_50	K03111	125.2	8.1e-37	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1518200_50	phrog_44	133.9	1.1e-39	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518200_50	UniRef90_A0A7X6XBF9	159.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1518200_50	169963.lmo2308	123.0	6.76e-34	DNA-binding protein	N/A
Pfam	UHGV-1518200_50	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1518200_50	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1518200_50	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1518200_50	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1518200_50	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_51	phrog_1123	57.1	1.4e-16	N/A	unknown function
eggNOG-mapper	UHGV-1518200_51	445972.ANACOL_03346	62.4	0.000000000115	N/A	N/A
PHROG	UHGV-1518200_52	phrog_72	50.5	0.000000000000029	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518200_52	UniRef90_UPI000C7BF263	119.0	3e-31	recombination protein NinB	N/A
eggNOG-mapper	UHGV-1518200_52	1399942.U3PCT8_9CAUD	130.0	2.16e-36	N/A	N/A
structural_annotation	UHGV-1518200_52	PF05772,NF007281	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_56	phrog_674	121.8	5.9e-36	N/A	unknown function
UniRef90	UHGV-1518200_56	UniRef90_A0A7X7EMF4	129.0	3.84e-32	N/A	N/A
eggNOG-mapper	UHGV-1518200_56	754027.HMPREF9554_00708	150.0	1.49e-39	N/A	N/A
Pfam	UHGV-1518200_56	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-1518200_56	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_57	phrog_155	84.2	1.7e-24	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518200_57	UniRef90_A0A0F4VQR1	139.0	1.37e-37	Essential recombination function protein	N/A
eggNOG-mapper	UHGV-1518200_57	318464.IO99_00460	131.0	2.26e-35	ERF superfamily	N/A
Pfam	UHGV-1518200_57	PF04404	N/A	N/A	ERF superfamily	ERF
structural_annotation	UHGV-1518200_57	PF04404,COG4712	N/A	N/A	N/A	N/A
KOfam	UHGV-1518200_58	K02086	78.2	9.7e-23	dnaD; DNA replication protein	N/A
PHROG	UHGV-1518200_58	phrog_5708	242.2	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1518200_58	UniRef90_UPI000EA32791	192.0	0	DnaD domain protein	N/A
eggNOG-mapper	UHGV-1518200_58	1415774.U728_1701	182.0	0	DnaD domain protein	N/A
Pfam	UHGV-1518200_58	PF07261	N/A	N/A	Replication initiation and membrane attachment	DnaB_2
NCBIFam	UHGV-1518200_58	TIGR01446.1	N/A	N/A	DnaD domain protein	N/A
COG	UHGV-1518200_58	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1518200_58	TIGR01714	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_60	phrog_989	40.9	0.000000000023	N/A	unknown function
eggNOG-mapper	UHGV-1518200_60	515620.EUBELI_01804	45.8	0.00000823	N/A	N/A
UniRef90	UHGV-1518200_61	UniRef90_R5A161	158.0	0	Helix-turn-helix domain protein	N/A
COG	UHGV-1518200_61	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-1518200_61	PF13560,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1518200_62	UniRef90_R5A425	222.0	0	DNA-binding helix-turn-helix protein	N/A
structural_annotation	UHGV-1518200_62	PF01381,NF041951,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1518200_63	phrog_87	41.2	0.000000000023	metallo-protease	other
UniRef90	UHGV-1518200_63	UniRef90_R5AAT8	191.0	0	Peptidase_M78 domain-containing protein	N/A
Pfam	UHGV-1518200_63	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-1518200_63	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1518200_65	K14059	175.6	0	int; integrase	N/A
PHROG	UHGV-1518200_65	phrog_1	154.9	0	integrase	integration and excision
UniRef90	UHGV-1518200_65	UniRef90_R5A639	679.0	0	Tyr recombinase domain-containing protein	N/A
eggNOG-mapper	UHGV-1518200_65	888746.HMPREF9180_0151	117.0	1.12e-26	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-1518200_65	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-1518200_65	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-1518200_65	PF00589,PF14659,PF14657,MF_01808,TIGR02224,COG4974	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1518200	Yes	36,469	27	97	1
UHGV-0058319	No	44,963	28	100	1
UHGV-1539498	No	41,183	27	100	1
UHGV-1516800	No	37,082	27	98	1
UHGV-1506350	No	36,932	27	98	1
UHGV-0056767	No	30,821	28	82	1
UHGV-0205080	No	26,903	28	71	1
UHGV-2201892	No	26,709	28	71	1
UHGV-0048760	No	26,043	26	69	1
UHGV-1408979	No	26,043	26	69	1
UHGV-1420498	No	20,939	28	56	1
UHGV-1354209	No	20,062	26	50	1
UHGV-1152936	No	15,571	27	43	1
UHGV-1165247	No	15,492	28	41	1
UHGV-1350205	No	12,803	29	34	1
UHGV-1091706	No	11,525	27	28	1
UHGV-1171449	No	15,494	25	26	1
UHGV-1614719	No	10,556	25	26	1