vOTU vOTU-009060

vOTU: vOTU-009060

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-009060
Number of genomes	24
Taxonomy (ICTV)
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-07167 → vGENUS-19388 → vSUBGEN-37479 → vOTU-009060
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0123609
Biosample ID	SAMEA37112668
Genome length (bp)	37,445 bps
CheckV completeness	99.90% (High-quality)
CDS count	47
CDS density	90.27%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae	Total connections	24	Host agreement	100
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0123609_1	phrog_17051	73.5	3e-21	N/A	unknown function
UniRef90	UHGV-0123609_1	UniRef90_UPI001D0DEC62	114.0	2.48e-32	N/A	N/A
eggNOG-mapper	UHGV-0123609_1	411490.ANACAC_00715	95.9	1.68e-22	N/A	N/A
Pfam	UHGV-0123609_1	PF03235	N/A	N/A	N/A	DUF262
COG	UHGV-0123609_1	COG1479	N/A	N/A	N/A	N/A
UniRef90	UHGV-0123609_2	UniRef90_A0A173USD8	137.0	5.65998e-41	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0123609_2	1235800.C819_01469	117.0	7.77e-34	N/A	N/A
Pfam	UHGV-0123609_2	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0123609_2	PF20075,TIGR03070,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0123609_3	K06400	291.1	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0123609_3	phrog_95	381.0	0	integrase	integration and excision
UniRef90	UHGV-0123609_3	UniRef90_B0MAZ1	728.0	0	Resolvase, N-terminal domain protein	N/A
eggNOG-mapper	UHGV-0123609_3	411490.ANACAC_00717	728.0	0	resolvase	N/A
Pfam	UHGV-0123609_3	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0123609_3	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0123609_3	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0123609_3	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0123609_3	PF00239,PF07508,PF18822,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_4	phrog_3099	117.7	8.6e-35	N/A	unknown function
eggNOG-mapper	UHGV-0123609_4	1160721.RBI_II00532	200.0	0	N/A	N/A
structural_annotation	UHGV-0123609_4	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_5	phrog_3266	86.6	2.4e-25	tail completion	connector
UniRef90	UHGV-0123609_5	UniRef90_UPI0018994F5C	57.4	0.000000124	chloramphenicol resistance protein	N/A
eggNOG-mapper	UHGV-0123609_5	1160721.RBI_II00533	192.0	0	N/A	N/A
structural_annotation	UHGV-0123609_5	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_6	phrog_556	109.7	1.6e-32	minor head protein	head and packaging
UniRef90	UHGV-0123609_6	UniRef90_UPI001D06F225	245.0	0	minor capsid protein	N/A
eggNOG-mapper	UHGV-0123609_6	1160721.RBI_II00534	173.0	0	Minor capsid protein	N/A
Pfam	UHGV-0123609_6	PF11114	N/A	N/A	Minor capsid protein	Minor_capsid_2
structural_annotation	UHGV-0123609_6	PF11114	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0123609_7	1449050.JNLE01000003_gene3887	53.1	0.000000188	N/A	N/A
Pfam	UHGV-0123609_7	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-0123609_7	PF20536,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_8	phrog_541	68.7	7.3e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-0123609_8	642492.Clole_0822	83.2	3.96e-19	N/A	N/A
PHROG	UHGV-0123609_9	phrog_3281	44.5	0.0000000000029	endonuclease VII	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0123609_9	UniRef90_UPI000F525D4E	69.3	0.0000000000000418	Rho termination factor N-terminal domain-containing protein	N/A
PHROG	UHGV-0123609_10	phrog_422	241.5	0	major head protein	head and packaging
UniRef90	UHGV-0123609_10	UniRef90_W0U896	510.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0123609_10	1160721.RBI_II00538	510.0	0	N/A	N/A
structural_annotation	UHGV-0123609_10	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_11	phrog_194	101.2	1.3e-29	head scaffolding protein	head and packaging
UniRef90	UHGV-0123609_11	UniRef90_UPI001D08023A	308.0	0	phage scaffolding protein	N/A
eggNOG-mapper	UHGV-0123609_11	1408437.JNJN01000045_gene593	77.8	0.00000000000000268	Phage minor structural protein GP20	N/A
Pfam	UHGV-0123609_11	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-0123609_11	PF06810	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_14	phrog_581	314.2	0	minor head protein	head and packaging
UniRef90	UHGV-0123609_14	UniRef90_UPI001D08F710	806.0	0	phage minor capsid protein	N/A
eggNOG-mapper	UHGV-0123609_14	1160721.RBI_II00541	608.0	0	N/A	N/A
Pfam	UHGV-0123609_14	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0123609_14	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123609_14	PF06152	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_15	phrog_533	160.4	0	portal protein	head and packaging
UniRef90	UHGV-0123609_15	UniRef90_A0A1K1N8Z6	316.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-0123609_15	1160721.RBI_II00542	440.0	0	N/A	N/A
structural_annotation	UHGV-0123609_15	PF05133,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0123609_16	K06909	54.0	0.0000000000000023	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0123609_16	phrog_2	69.6	6.7e-20	terminase large subunit	head and packaging
UniRef90	UHGV-0123609_16	UniRef90_UPI001D069476	713.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-0123609_16	1160721.RBI_II00543	587.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-0123609_16	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-0123609_16	COG1783	N/A	N/A	Phage terminase large subunit	N/A
KOfam	UHGV-0123609_17	K02855	166.1	0	rhaS; AraC family transcriptional regulator, L-rhamnose operon regulatory protein RhaS	N/A
PHROG	UHGV-0123609_17	phrog_7620	73.0	3.5e-21	transcriptional regulator	transcription regulation
UniRef90	UHGV-0123609_17	UniRef90_A0A174Z5W8	563.0	0	Melibiose operon regulatory protein	N/A
eggNOG-mapper	UHGV-0123609_17	1160721.RBI_I00922	605.0	0	Cupin domain	N/A
Pfam	UHGV-0123609_17	PF07883	N/A	N/A	Cupin domain	Cupin_2
Pfam	UHGV-0123609_17	PF12833	N/A	N/A	Helix-turn-helix domain	HTH_18
COG	UHGV-0123609_17	COG0662	N/A	N/A	Mannose-6-phosphate isomerase, cupin superfamily	N/A
structural_annotation	UHGV-0123609_17	PF02311,PF12833,MF_01534,NF010026,COG2207,COG1917	N/A	N/A	N/A	N/A
KOfam	UHGV-0123609_18	K08174	140.3	1.10002e-41	glcP; MFS transporter, FHS family, glucose/mannose:H+ symporter	N/A
PHROG	UHGV-0123609_18	phrog_2034	83.3	2.1e-24	N/A	unknown function
UniRef90	UHGV-0123609_18	UniRef90_W0U4E7	746.0	0	Possible sugar permease	N/A
eggNOG-mapper	UHGV-0123609_18	1160721.RBI_I00923	746.0	0	Major Facilitator	N/A
Pfam	UHGV-0123609_18	PF07690	N/A	N/A	Major Facilitator Superfamily	MFS_1
COG	UHGV-0123609_18	COG0738	N/A	N/A	Fucose permease	N/A
KOfam	UHGV-0123609_19	K02099	162.8	0	araC; AraC family transcriptional regulator, arabinose operon regulatory protein	N/A
PHROG	UHGV-0123609_19	phrog_7620	71.4	1e-20	transcriptional regulator	transcription regulation
UniRef90	UHGV-0123609_19	UniRef90_A0A3D2EJL7	492.0	0	AraC family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0123609_19	246199.CUS_7547	272.0	0	AraC-like ligand binding domain	N/A
Pfam	UHGV-0123609_19	PF02311	N/A	N/A	AraC-like ligand binding domain	AraC_binding
Pfam	UHGV-0123609_19	PF12833	N/A	N/A	Helix-turn-helix domain	HTH_18
COG	UHGV-0123609_19	COG1917	N/A	N/A	Cupin domain protein related to quercetin dioxygenase	N/A
structural_annotation	UHGV-0123609_19	PF02311,PF12833,MF_01534,NF007860,COG2207,COG0662	N/A	N/A	N/A	N/A
KOfam	UHGV-0123609_20	K01190	417.4	0	lacZ; beta-galactosidase [EC:3.2.1.23]	N/A
UniRef90	UHGV-0123609_20	UniRef90_A0A174ZEY2	1375.0	0	Beta-galactosidase	N/A
eggNOG-mapper	UHGV-0123609_20	35754.JNYJ01000009_gene2037	457.0	0	Glycosyl hydrolases family 2, TIM barrel domain	N/A
Pfam	UHGV-0123609_20	PF02837	N/A	N/A	Glycosyl hydrolases family 2, sugar binding domain	Glyco_hydro_2_N
Pfam	UHGV-0123609_20	PF00703	N/A	N/A	Glycosyl hydrolases family 2	Glyco_hydro_2
Pfam	UHGV-0123609_20	PF02836	N/A	N/A	Glycosyl hydrolases family 2, TIM barrel domain	Glyco_hydro_2_C
Pfam	UHGV-0123609_20	PF16355	N/A	N/A	N/A	DUF4982
COG	UHGV-0123609_20	COG3250	N/A	N/A	Beta-galactosidase/beta-glucuronidase	N/A
PHROG	UHGV-0123609_22	phrog_9479	167.4	0	N/A	unknown function
structural_annotation	UHGV-0123609_22	PF15529	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_23	phrog_8680	223.9	0	N/A	unknown function
UniRef90	UHGV-0123609_23	UniRef90_A0A373V619	306.0	0	N/A	N/A
eggNOG-mapper	UHGV-0123609_23	411470.RUMGNA_02208	241.0	0	N/A	N/A
Pfam	UHGV-0123609_23	PF14386	N/A	N/A	N/A	DUF4417
structural_annotation	UHGV-0123609_23	PF14386	N/A	N/A	N/A	N/A
KOfam	UHGV-0123609_24	K07273	177.8	0	acm; lysozyme	N/A
PHROG	UHGV-0123609_24	phrog_291	165.1	0	endolysin	lysis
UniRef90	UHGV-0123609_24	UniRef90_UPI001D06C0C4	535.0	0	glycoside hydrolase family 25 protein	N/A
eggNOG-mapper	UHGV-0123609_24	246199.CUS_5914	293.0	0	hydrolase, family 25	N/A
Pfam	UHGV-0123609_24	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-0123609_24	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-0123609_24	PF01183,PF01471,COG3757	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_25	phrog_199	87.3	1.7e-25	holin	lysis
UniRef90	UHGV-0123609_25	UniRef90_R6CL31	272.0	0	Toxin secretion/phage lysis holin	N/A
eggNOG-mapper	UHGV-0123609_25	887325.HMPREF0381_0407	185.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-0123609_25	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0123609_25	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0123609_25	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0123609_25	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0123609_29	1160721.RBI_II00526	315.0	0	N/A	N/A
structural_annotation	UHGV-0123609_29	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_30	phrog_1194	51.5	0.000000000000017	N/A	unknown function
eggNOG-mapper	UHGV-0123609_30	877414.ATWA01000001_gene917	52.4	0.0000006	N/A	N/A
PHROG	UHGV-0123609_31	phrog_1535	215.2	0	tail length tape measure protein	tail
UniRef90	UHGV-0123609_31	UniRef90_A0A174Z8D9	215.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-0123609_31	1280692.AUJL01000027_gene2150	122.0	1.51e-25	phage tail tape measure protein	N/A
COG	UHGV-0123609_31	COG1511	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_32	phrog_8355	84.2	7.4e-25	N/A	unknown function
UniRef90	UHGV-0123609_32	UniRef90_A0A1C6EB03	107.0	4.54e-28	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-0123609_32	1507.HMPREF0262_01186	85.5	3.66e-20	N/A	N/A
structural_annotation	UHGV-0123609_32	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_33	phrog_8300	93.1	2.1e-27	N/A	unknown function
eggNOG-mapper	UHGV-0123609_33	1507.HMPREF0262_00213	95.1	5.92e-24	N/A	N/A
PHROG	UHGV-0123609_34	phrog_820	132.2	2.4e-39	major tail protein	tail
eggNOG-mapper	UHGV-0123609_34	1282664.H354_06691	190.0	0	N/A	N/A
structural_annotation	UHGV-0123609_34	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_35	phrog_2595	69.4	4.7e-20	head-tail connector protein	connector
UniRef90	UHGV-0123609_35	UniRef90_UPI001BEB3BC5	89.4	2.52e-20	minor capsid protein	N/A
eggNOG-mapper	UHGV-0123609_35	1117108.PAALTS15_13537	84.3	3.83e-19	N/A	N/A
Pfam	UHGV-0123609_35	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-0123609_35	PF12691,COG5003	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0123609_36	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_37	phrog_8710	102.8	2.3e-30	N/A	unknown function
eggNOG-mapper	UHGV-0123609_37	1294142.CINTURNW_1032	89.0	1.56e-21	N/A	N/A
structural_annotation	UHGV-0123609_37	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_38	phrog_541	73.1	3.7e-21	head-tail adaptor	connector
eggNOG-mapper	UHGV-0123609_38	1151292.QEW_2431	95.5	9.59e-24	N/A	N/A
PHROG	UHGV-0123609_39	phrog_422	273.0	0	major head protein	head and packaging
UniRef90	UHGV-0123609_39	UniRef90_A0A1Y4R5U9	468.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-0123609_39	663278.Ethha_1589	398.0	0	N/A	N/A
structural_annotation	UHGV-0123609_39	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_40	phrog_2303	44.5	0.00000000000072	head scaffolding protein	head and packaging
PHROG	UHGV-0123609_42	phrog_581	261.9	0	minor head protein	head and packaging
UniRef90	UHGV-0123609_42	UniRef90_A0A1C6HBH6	369.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-0123609_42	1507.HMPREF0262_01176	330.0	0	Phage minor capsid protein 2	N/A
Pfam	UHGV-0123609_42	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
COG	UHGV-0123609_42	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_43	phrog_533	230.4	0	portal protein	head and packaging
UniRef90	UHGV-0123609_43	UniRef90_A0A374HLV7	744.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0123609_43	1117108.PAALTS15_13582	434.0	0	N/A	N/A
structural_annotation	UHGV-0123609_43	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
KOfam	UHGV-0123609_44	K06909	99.0	5.8e-29	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-0123609_44	phrog_2	75.4	1.2e-21	terminase large subunit	head and packaging
UniRef90	UHGV-0123609_44	UniRef90_A0A373XSH6	815.0	0	Terminase	N/A
eggNOG-mapper	UHGV-0123609_44	1282664.H354_06621	602.0	0	Phage terminase, large subunit, PBSX family	N/A
COG	UHGV-0123609_44	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-0123609_44	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
KOfam	UHGV-0123609_45	K07474	86.7	5.7e-25	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0123609_45	phrog_51	83.0	2.8e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0123609_45	UniRef90_A0A374HNN6	205.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0123609_45	1160721.RBI_II00483	113.0	1.36e-30	DNA packaging	N/A
Pfam	UHGV-0123609_45	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0123609_45	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0123609_45	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0123609_47	phrog_10865	139.3	2.29995e-41	N/A	unknown function
eggNOG-mapper	UHGV-0123609_47	743719.PaelaDRAFT_2392	102.0	2.27e-22	N/A	N/A
Pfam	UHGV-0123609_47	PF20505	N/A	N/A	N/A	DUF6731
structural_annotation	UHGV-0123609_47	PF20505,NF001463	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0123609	Yes	37,445	49	100	1
UHGV-0132749	No	44,678	51	100	1
UHGV-0106792	No	43,514	50	100	1
UHGV-2043269	No	37,349	50	100	1
UHGV-0134449	No	23,268	48	62	1
UHGV-0133088	No	20,451	45	54	1
UHGV-0190630	No	16,461	56	42	1
UHGV-0140628	No	16,331	55	42	1
UHGV-1647391	No	16,331	55	42	1
UHGV-1817937	No	16,073	55	41	1
UHGV-0184045	No	15,277	44	41	1
UHGV-1640247	No	15,695	56	40	1
UHGV-1636307	No	14,419	55	37	1
UHGV-1633531	No	14,364	55	37	1
UHGV-1802324	No	13,644	55	35	1
UHGV-1618655	No	13,366	56	35	1
UHGV-1847045	No	12,852	45	34	1
UHGV-0069816	No	12,835	45	34	1
UHGV-1834521	No	12,550	45	33	1
UHGV-1819346	No	12,053	55	32	1
UHGV-1591780	No	11,685	54	30	1
UHGV-1665136	No	11,019	56	29	1
UHGV-1706701	No	10,918	56	29	1
UHGV-2116027	No	10,522	46	28	1