vOTU vOTU-009377

vOTU: vOTU-009377

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-009377
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00008 → vSUBFAM-00061 → vGENUS-00169 → vSUBGEN-16953 → vOTU-009377
Host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A
Host range breadth	Species
Lifestyle	temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0076159
Biosample ID	SAMEA2580138
Genome length (bp)	42,186 bps
CheckV completeness	99.90% (High-quality)
CDS count	58
CDS density	95.61%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_C → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella parvula_A	Total connections	82	Host agreement	84.15
PHIST-predicted host lineage		Total connections		Host agreement

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-0076159_1	K14059	217.5	0	int; integrase	N/A
PHROG	UHGV-0076159_1	phrog_1	192.8	0	integrase	integration and excision
UniRef90	UHGV-0076159_1	UniRef90_UPI001D0692F2	526.0	0	site-specific integrase	N/A
eggNOG-mapper	UHGV-0076159_1	1232428.CAVO010000003_gene1025	271.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0076159_1	PF14657	N/A	N/A	Arm DNA-binding domain	Arm-DNA-bind_4
Pfam	UHGV-0076159_1	PF14659	N/A	N/A	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
Pfam	UHGV-0076159_1	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0076159_1	COG0582	N/A	N/A	Integrase/recombinase, includes phage integrase	N/A
structural_annotation	UHGV-0076159_1	PF00589,PF14659,MF_02055,TIGR02224,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_2	phrog_20936	138.4	1.49995e-41	N/A	unknown function
UniRef90	UHGV-0076159_2	UniRef90_D1YMA2	177.0	0	Peptidase_M78 domain-containing protein	N/A
eggNOG-mapper	UHGV-0076159_2	706434.HMPREF9429_00182	60.8	0.0000000000527	N/A	N/A
Pfam	UHGV-0076159_2	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
structural_annotation	UHGV-0076159_2	PF06114	N/A	N/A	N/A	N/A
KOfam	UHGV-0076159_4	K22299	53.6	0.0000000000000056	rghR; HTH-type transcriptional regulator, competence development regulator	N/A
PHROG	UHGV-0076159_4	phrog_8	51.0	0.000000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0076159_4	UniRef90_A0A239ZAB0	163.0	0	Helix-turn-helix	N/A
eggNOG-mapper	UHGV-0076159_4	706434.HMPREF9429_00594	129.0	6.07e-37	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0076159_4	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0076159_4	COG1396	N/A	N/A	Transcriptional regulator, contains XRE-family HTH domain	N/A
structural_annotation	UHGV-0076159_4	PF01381,MF_00535,NF041951,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076159_5	UniRef90_A0A2C6BK51	64.3	0.00000000000507	Toxin-antitoxin system, antitoxin component, Xre family protein	N/A
eggNOG-mapper	UHGV-0076159_5	887929.HMP0721_1290	57.4	0.000000000521	Helix-turn-helix domain of resolvase	N/A
structural_annotation	UHGV-0076159_5	PF05339,NF041951,COG3655	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_7	phrog_7735	109.2	2.1e-32	excisionase	integration and excision
UniRef90	UHGV-0076159_7	UniRef90_UPI00195FD229	173.0	0	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0076159_7	195103.CPF_0933	60.8	0.0000000000963	N/A	N/A
Pfam	UHGV-0076159_7	PF12728	N/A	N/A	Helix-turn-helix domain	HTH_17
structural_annotation	UHGV-0076159_7	PF12728,NF033787,COG3311	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_10	phrog_674	88.6	2.7e-26	N/A	unknown function
UniRef90	UHGV-0076159_10	UniRef90_UPI001D090BA8	495.0	0	N/A	N/A
eggNOG-mapper	UHGV-0076159_10	1415775.U729_15	82.4	0.00000000000000247	N/A	N/A
Pfam	UHGV-0076159_10	PF07083	N/A	N/A	N/A	DUF1351
structural_annotation	UHGV-0076159_10	PF07083	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_11	phrog_7838	111.5	8.6e-33	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076159_11	UniRef90_UPI001D07B780	383.0	0	RAD52 family DNA repair protein	N/A
eggNOG-mapper	UHGV-0076159_11	742767.HMPREF9456_02052	131.0	1.74e-35	N/A	N/A
structural_annotation	UHGV-0076159_11	PF06420,TIGR00607,COG4712	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_12	phrog_72	73.6	3e-21	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0076159_12	1507.HMPREF0262_00432	89.4	7.01e-20	N/A	N/A
KOfam	UHGV-0076159_13	K07451	46.1	0.00000000000099	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	N/A
PHROG	UHGV-0076159_13	phrog_7785	43.0	0.0000000000079	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076159_13	UniRef90_UPI000E746562	189.0	0	HNH endonuclease	N/A
Pfam	UHGV-0076159_13	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0076159_13	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0076159_13	PF01844,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_16	phrog_5708	211.0	0	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076159_16	UniRef90_A0A6A4UXR4	206.0	0	Phage replication initiation	N/A
eggNOG-mapper	UHGV-0076159_16	706434.HMPREF9429_00547	169.0	0	DnaD domain protein	N/A
COG	UHGV-0076159_16	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
PHROG	UHGV-0076159_17	phrog_9804	70.3	2.8e-20	N/A	unknown function
structural_annotation	UHGV-0076159_17	PF11417	N/A	N/A	N/A	N/A
KOfam	UHGV-0076159_19	K03111	148.9	5.1848e-44	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-0076159_19	phrog_44	127.0	1.6e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076159_19	UniRef90_UPI0019613F2D	236.0	0	single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-0076159_19	936589.HMPREF1521_1228	190.0	0	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	N/A
Pfam	UHGV-0076159_19	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-0076159_19	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-0076159_19	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-0076159_19	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-0076159_19	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_21	phrog_1672	58.1	1.7e-16	N/A	unknown function
UniRef90	UHGV-0076159_21	UniRef90_F5L204	98.2	9.12e-24	Conserved domain protein	N/A
PHROG	UHGV-0076159_22	phrog_954	203.6	0	DNA methyltransferase	other
UniRef90	UHGV-0076159_22	UniRef90_A0A239ZA70	276.0	0	Methyltransferase domain	N/A
eggNOG-mapper	UHGV-0076159_22	1401067.HMPREF0872_03435	247.0	0	methyltransferase	N/A
PADLOC	UHGV-0076159_22	MTase_II_00074	203.9	0	Type II methyltransferase	RM
Pfam	UHGV-0076159_22	PF08241	N/A	N/A	Methyltransferase domain	Methyltransf_11
COG	UHGV-0076159_22	COG0500	N/A	N/A	SAM-dependent methyltransferase	N/A
structural_annotation	UHGV-0076159_22	PF01170,MF_01057,TIGR00446,COG4123	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_23	phrog_2882	264.9	0	DNA methyltransferase	other
UniRef90	UHGV-0076159_23	UniRef90_UPI000E75FDEB	397.0	0	DNA methyltransferase	N/A
eggNOG-mapper	UHGV-0076159_23	565653.EGBG_01954	242.0	0	DNA (cytosine-5-)-methyltransferase activity	N/A
Pfam	UHGV-0076159_23	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-0076159_23	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-0076159_24	K00571	120.4	2.2e-35	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	N/A
PHROG	UHGV-0076159_24	phrog_67	101.3	7e-31	DNA methyltransferase	other
UniRef90	UHGV-0076159_24	UniRef90_UPI00196047F8	522.0	0	site-specific DNA-methyltransferase	N/A
eggNOG-mapper	UHGV-0076159_24	749222.Nitsa_1817	389.0	0	Belongs to the N(4) N(6)-methyltransferase family	N/A
PADLOC	UHGV-0076159_24	MTase_II_00157	100.0	6.1e-30	Type II methyltransferase	RM
Pfam	UHGV-0076159_24	PF01555	N/A	N/A	DNA methylase	N6_N4_Mtase
COG	UHGV-0076159_24	COG0863	N/A	N/A	DNA modification methylase	N/A
structural_annotation	UHGV-0076159_24	PF01555,MF_01872,NF010253,COG0863	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_25	phrog_918	100.9	6e-30	N/A	unknown function
UniRef90	UHGV-0076159_25	UniRef90_UPI001960DED1	178.0	0	N/A	N/A
eggNOG-mapper	UHGV-0076159_25	1401067.HMPREF0872_03440	105.0	7.04e-29	N/A	N/A
Pfam	UHGV-0076159_25	PF19791	N/A	N/A	N/A	DUF6275
structural_annotation	UHGV-0076159_25	PF19791	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_26	phrog_244	78.3	1.3e-22	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0076159_26	UniRef90_A0A841R0Q1	123.0	2.85e-34	Holliday junction resolvase	N/A
eggNOG-mapper	UHGV-0076159_26	1200557.JHWV01000001_gene280	126.0	5.44e-36	N/A	N/A
structural_annotation	UHGV-0076159_26	PF01870,MF_01490,NF040854,COG1591	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_30	phrog_774	79.8	4e-23	N/A	unknown function
UniRef90	UHGV-0076159_30	UniRef90_A0A0B7LQN3	78.2	4.6e-17	N/A	N/A
eggNOG-mapper	UHGV-0076159_30	1435051.BMOU_0242	59.7	0.00000000159	Helix-turn-helix domain	N/A
COG	UHGV-0076159_30	COG3311	N/A	N/A	DNA-binding transcriptional regulator AlpA	N/A
PHROG	UHGV-0076159_32	phrog_36	52.6	0.0000000000000098	transcriptional regulator	transcription regulation
UniRef90	UHGV-0076159_32	UniRef90_UPI0013DFE289	57.8	0.0000000997	N/A	N/A
eggNOG-mapper	UHGV-0076159_32	706434.HMPREF9429_00383	55.8	0.0000000947	N/A	N/A
structural_annotation	UHGV-0076159_32	PF07374	N/A	N/A	N/A	N/A
KOfam	UHGV-0076159_36	K07474	132.8	4.8e-39	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-0076159_36	phrog_51	137.3	7.30006e-41	terminase small subunit	head and packaging
UniRef90	UHGV-0076159_36	UniRef90_A0A496PEP2	264.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-0076159_36	1235800.C819_00494	119.0	2.66e-32	Terminase small subunit	N/A
Pfam	UHGV-0076159_36	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-0076159_36	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-0076159_36	PF03592,COG3728	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_37	phrog_5902	247.5	0	N/A	unknown function
UniRef90	UHGV-0076159_37	UniRef90_UPI0018C4A0E6	583.0	0	terminase	N/A
eggNOG-mapper	UHGV-0076159_37	1200557.JHWV01000001_gene277	579.0	0	Terminase RNaseH-like domain	N/A
COG	UHGV-0076159_37	COG0507	N/A	N/A	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-0076159_37	PF03237,PF20441,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_39	phrog_332	490.0	0	head-tail adaptor	connector
UniRef90	UHGV-0076159_39	UniRef90_UPI001D07F371	775.0	0	portal protein	N/A
eggNOG-mapper	UHGV-0076159_39	1401067.HMPREF0872_06810	605.0	0	Bacteriophage head to tail connecting protein	N/A
Pfam	UHGV-0076159_39	PF12236	N/A	N/A	Bacteriophage head to tail connecting protein	Head-tail_con
structural_annotation	UHGV-0076159_39	PF12236,MF_04120,TIGR01538,COG4695	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_40	phrog_528	88.6	3.1e-26	N/A	unknown function
UniRef90	UHGV-0076159_40	UniRef90_A0A8E8TUT9	57.0	0.0000000208	Endopeptidase	N/A
eggNOG-mapper	UHGV-0076159_40	1401067.HMPREF0872_06805	92.0	6.45e-23	N/A	N/A
PHROG	UHGV-0076159_41	phrog_458	135.0	7.69999e-40	protease	other
UniRef90	UHGV-0076159_41	UniRef90_A0A7X8Z540	58.2	0.000000691	Protease	N/A
eggNOG-mapper	UHGV-0076159_41	1401067.HMPREF0872_06800	108.0	1.15e-26	N/A	N/A
PHROG	UHGV-0076159_42	phrog_212	225.8	0	major head protein	head and packaging
UniRef90	UHGV-0076159_42	UniRef90_A0A239Z8I8	502.0	0	Phage capsid family	N/A
eggNOG-mapper	UHGV-0076159_42	1401067.HMPREF0872_06795	365.0	0	N/A	N/A
Pfam	UHGV-0076159_42	PF20911	N/A	N/A	Major capsid protein GP7	GP7
structural_annotation	UHGV-0076159_42	PF20911,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_43	phrog_427	49.7	0.000000000000065	N/A	unknown function
structural_annotation	UHGV-0076159_43	PF21190	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_45	phrog_394	179.1	0	tail protein	tail
UniRef90	UHGV-0076159_45	UniRef90_A0A0U1KW64	102.0	8.19e-24	N/A	N/A
eggNOG-mapper	UHGV-0076159_45	1401067.HMPREF0872_06780	202.0	0	N/A	N/A
structural_annotation	UHGV-0076159_45	PF17212	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_46	phrog_376	729.7	0	tail protein	tail
UniRef90	UHGV-0076159_46	UniRef90_A0A0U1KV93	360.0	0	N/A	N/A
eggNOG-mapper	UHGV-0076159_46	1401067.HMPREF0872_06775	688.0	0	N/A	N/A
structural_annotation	UHGV-0076159_46	PF11134,MF_00923,TIGR03300,COG2706	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_47	phrog_308	100.5	1.6e-29	internal virion protein	head and packaging
UniRef90	UHGV-0076159_47	UniRef90_UPI001D08FF44	175.0	0	N/A	N/A
structural_annotation	UHGV-0076159_47	PF11039,MF_02210,NF000165,COG1247	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_48	phrog_418	62.1	1.1e-17	internal virion protein	head and packaging
eggNOG-mapper	UHGV-0076159_48	1401067.HMPREF0872_06765	183.0	0	N/A	N/A
structural_annotation	UHGV-0076159_48	PF05384,TIGR01010,COG3524	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0076159_49	PF01464,COG0741	N/A	N/A	N/A	N/A
KOfam	UHGV-0076159_50	K20478	100.5	3.2e-30	GOLGB1; golgin subfamily B member 1	N/A
PHROG	UHGV-0076159_50	phrog_9880	232.5	0	N/A	unknown function
UniRef90	UHGV-0076159_50	UniRef90_D1YMD8	5216.0	0	MuF_C domain-containing protein	N/A
eggNOG-mapper	UHGV-0076159_50	699218.HMPREF0889_0277	464.0	0	N/A	N/A
Pfam	UHGV-0076159_50	PF18819	N/A	N/A	Phage MuF-C-terminal domain	MuF_C
UniRef90	UHGV-0076159_51	UniRef90_UPI001D087ED4	1547.0	0	glycoside hydrolase family 55 protein	N/A
Pfam	UHGV-0076159_51	PF12708	N/A	N/A	Pectate lyase superfamily protein	Pectate_lyase_3
COG	UHGV-0076159_51	COG5434	N/A	N/A	Polygalacturonase	N/A
structural_annotation	UHGV-0076159_51	PF05096,PF03906,MF_03008,TIGR03866,COG3204	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_53	phrog_23091	275.9	0	N/A	unknown function
structural_annotation	UHGV-0076159_53	PF05105,NF035928	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_55	phrog_26249	80.2	1.1e-23	N/A	unknown function
UniRef90	UHGV-0076159_55	UniRef90_UPI001D017339	151.0	5.65984e-42	chitosanase	N/A
eggNOG-mapper	UHGV-0076159_55	546273.VEIDISOL_01083	245.0	0	LysM domain	N/A
Pfam	UHGV-0076159_55	PF21277	N/A	N/A	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
COG	UHGV-0076159_55	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0076159_55	PF21277	N/A	N/A	N/A	N/A
PHROG	UHGV-0076159_56	phrog_10797	234.7	0	N/A	unknown function
UniRef90	UHGV-0076159_56	UniRef90_A0A1B1I041	128.0	1.25e-33	Glycoprotease	N/A
eggNOG-mapper	UHGV-0076159_56	883156.HMPREF9282_01266	136.0	5.4e-38	N/A	N/A
structural_annotation	UHGV-0076159_56	PF06531	N/A	N/A	N/A	N/A
UniRef90	UHGV-0076159_57	UniRef90_D1YME6	233.0	0	SprT-like domain-containing protein	N/A
Pfam	UHGV-0076159_57	PF10263	N/A	N/A	SprT-like family	SprT-like
structural_annotation	UHGV-0076159_57	PF10263	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0076159	Yes	42,186	37	100	1
UHGV-1389373	No	42,186	37	100	1
UHGV-0186866	No	39,826	37	96	1
UHGV-1472783	No	39,826	37	96	1
UHGV-2001718	No	39,687	37	96	1