vOTU vOTU-009434

vOTU: vOTU-009434

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-009434
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 → vSUBFAM-00134 → vGENUS-15086 → vSUBGEN-25977 → vOTU-009434
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0017574
Biosample ID	SAMEA4766182
Genome length (bp)	39,497 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	91.43%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1059	Host agreement	81.11
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Acutalibacteraceae → Ruminococcus_E → Ruminococcus_E bromii_B	Total connections	1	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-0017574_1	phrog_7312	115.5	3.4e-34	N/A	unknown function
eggNOG-mapper	UHGV-0017574_1	742738.HMPREF9460_01401	138.0	1.83e-38	N/A	N/A
PADLOC	UHGV-0017574_1	KwaA_00013	188.1	0	N/A	Kiwa
NCBIFam	UHGV-0017574_1	NF041622.1	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_2	phrog_36735	58.3	1.2e-16	N/A	unknown function
UniRef90	UHGV-0017574_2	UniRef90_UPI001967DD7F	303.0	0	N/A	N/A
eggNOG-mapper	UHGV-0017574_2	1227352.C173_32251	212.0	0	N/A	N/A
PADLOC	UHGV-0017574_2	KwaB_00012	326.6	0	N/A	Kiwa
Pfam	UHGV-0017574_2	PF16162	N/A	N/A	Kiwa protein KwaB-like	KwaB
NCBIFam	UHGV-0017574_2	NF041623.1	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017574_3	UniRef90_UPI0009B07DD2	997.0	0	ATP-binding protein	N/A
eggNOG-mapper	UHGV-0017574_3	1095727.HMPREF1117_0698	1011.0	0	Atp-dependent helicase	N/A
PADLOC	UHGV-0017574_3	Avs2_00002	658.7	0	NA	AVAST
COG	UHGV-0017574_3	COG5635	N/A	N/A	Predicted NTPase, NACHT family domain	N/A
KOfam	UHGV-0017574_4	K14059	87.5	2.2e-25	int; integrase	N/A
PHROG	UHGV-0017574_4	phrog_1	116.8	2.5e-34	integrase	integration and excision
UniRef90	UHGV-0017574_4	UniRef90_A0A1G5CL52	794.0	0	Phage integrase family protein	N/A
eggNOG-mapper	UHGV-0017574_4	693746.OBV_41260	186.0	0	Belongs to the 'phage' integrase family	N/A
Pfam	UHGV-0017574_4	PF00589	N/A	N/A	Phage integrase family	Phage_integrase
COG	UHGV-0017574_4	COG4974	N/A	N/A	Site-specific recombinase XerD	N/A
structural_annotation	UHGV-0017574_4	PF00589,MF_01808,NF007246,COG4974	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_7	phrog_1914	147.0	9.94922e-44	N/A	unknown function
UniRef90	UHGV-0017574_7	UniRef90_A0A374NDM7	329.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-0017574_7	1160721.RBI_I01604	166.0	0	N/A	N/A
Pfam	UHGV-0017574_7	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-0017574_7	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-0017574_7	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-0017574_8	K22300	47.6	0.00000000000032	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	N/A
PHROG	UHGV-0017574_8	phrog_8	41.0	0.000000000036	transcriptional regulator	transcription regulation
UniRef90	UHGV-0017574_8	UniRef90_UPI0015F3DE1D	106.0	1.51e-26	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0017574_8	272562.CA_C1559	67.4	0.00000000000249	sequence-specific DNA binding	N/A
Pfam	UHGV-0017574_8	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017574_8	COG1476	N/A	N/A	DNA-binding transcriptional regulator, XRE-family HTH domain	N/A
structural_annotation	UHGV-0017574_8	PF05339,NF007257,COG3655	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017574_9	UniRef90_UPI001897B0FF	72.4	0.00000000000000224	helix-turn-helix transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017574_9	1121289.JHVL01000079_gene1187	59.3	0.0000000000535	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-0017574_9	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
structural_annotation	UHGV-0017574_9	PF12844,NF041951,COG1396	N/A	N/A	N/A	N/A
KOfam	UHGV-0017574_12	K00390	88.0	1e-25	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	N/A
PHROG	UHGV-0017574_12	phrog_424	118.1	6.5e-35	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-0017574_12	UniRef90_UPI001C034617	545.0	0	phosphoadenosine phosphosulfate reductase family protein	N/A
eggNOG-mapper	UHGV-0017574_12	1408437.JNJN01000032_gene2312	341.0	0	Phosphoadenosine phosphosulfate reductase	N/A
PADLOC	UHGV-0017574_12	BrxP_00001	74.5	3.3e-22	BrxP	BREX
Pfam	UHGV-0017574_12	PF01507	N/A	N/A	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
COG	UHGV-0017574_12	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
structural_annotation	UHGV-0017574_12	PF01507,MF_00063,NF010369,COG0175	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_13	phrog_6058	41.5	0.000000000014	N/A	unknown function
structural_annotation	UHGV-0017574_13	NF033787	N/A	N/A	N/A	N/A
KOfam	UHGV-0017574_16	K03497	151.5	8.40779e-45	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	N/A
PHROG	UHGV-0017574_16	phrog_6218	249.8	0	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017574_16	UniRef90_UPI000E47CAB6	733.0	0	ParB/RepB/Spo0J family partition protein	N/A
eggNOG-mapper	UHGV-0017574_16	394503.Ccel_3306	253.0	0	Belongs to the ParB family	N/A
Pfam	UHGV-0017574_16	PF02195	N/A	N/A	ParB/Sulfiredoxin domain	ParBc
NCBIFam	UHGV-0017574_16	TIGR00180.1	N/A	N/A	ParB/RepB/Spo0J family partition protein	N/A
COG	UHGV-0017574_16	COG0710	N/A	N/A	3-dehydroquinate dehydratase	N/A
structural_annotation	UHGV-0017574_16	PF18579,MF_02015,TIGR00180,COG1475	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_18	phrog_24518	81.2	1.2e-23	N/A	unknown function
eggNOG-mapper	UHGV-0017574_18	1519439.JPJG01000077_gene922	110.0	1.35e-27	N/A	N/A
PHROG	UHGV-0017574_19	phrog_824	146.5	7.28675e-44	N/A	unknown function
UniRef90	UHGV-0017574_19	UniRef90_A0A3D3D6C6	249.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0017574_19	397288.C806_00096	159.0	0	VRR_NUC	N/A
Pfam	UHGV-0017574_19	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
structural_annotation	UHGV-0017574_19	PF08774	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_22	phrog_2118	118.8	4.7e-35	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017574_22	UniRef90_A0A374DVG7	248.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0017574_22	610130.Closa_0730	151.0	1.4013e-45	HNH endonuclease	N/A
Pfam	UHGV-0017574_22	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0017574_22	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
structural_annotation	UHGV-0017574_22	TIGR02646,COG1403	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_26	phrog_3584	143.9	1.10002e-42	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0017574_26	1235800.C819_00515	70.5	0.0000000000134	N/A	N/A
structural_annotation	UHGV-0017574_26	PF21578,NF041486	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0017574_27	431943.CKL_4074	50.8	0.00000453	N/A	N/A
structural_annotation	UHGV-0017574_27	TIGR01636	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_28	phrog_119	70.5	2.4e-20	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0017574_28	UniRef90_A0A412ULY9	218.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0017574_28	1158607.UAU_01026	100.0	2.91e-26	HNH endonuclease	N/A
Pfam	UHGV-0017574_28	PF01844	N/A	N/A	HNH endonuclease	HNH
COG	UHGV-0017574_28	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0017574_29	phrog_5110	82.2	3.7e-24	terminase small subunit	head and packaging
UniRef90	UHGV-0017574_29	UniRef90_A0A1M5U1D5	113.0	1.02e-29	Phage terminase, small subunit	N/A
eggNOG-mapper	UHGV-0017574_29	1211817.CCAT010000053_gene2128	100.0	2.54e-25	N/A	N/A
Pfam	UHGV-0017574_29	PF05119	N/A	N/A	Phage terminase, small subunit	Terminase_4
PHROG	UHGV-0017574_30	phrog_9	280.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0017574_30	UniRef90_A0A412UM03	1091.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0017574_30	86416.Clopa_0337	635.0	0	Phage Terminase	N/A
Pfam	UHGV-0017574_30	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0017574_30	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0017574_30	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0017574_30	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_31	phrog_12	97.8	8e-29	portal protein	head and packaging
UniRef90	UHGV-0017574_31	UniRef90_A0A412ULV9	725.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0017574_31	1415774.U728_1254	258.0	0	Phage portal protein	N/A
Pfam	UHGV-0017574_31	PF04860	N/A	N/A	Phage portal protein	Phage_portal
NCBIFam	UHGV-0017574_31	TIGR01537.1	N/A	N/A	phage portal protein	N/A
COG	UHGV-0017574_31	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0017574_31	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0017574_32	K01358	140.6	1.49995e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0017574_32	phrog_94	206.6	0	head maturation protease	head and packaging
UniRef90	UHGV-0017574_32	UniRef90_A0A412ULU1	458.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0017574_32	1211817.CCAT010000053_gene2131	183.0	0	Belongs to the peptidase S14 family	N/A
Pfam	UHGV-0017574_32	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0017574_32	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0017574_32	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_33	phrog_10	125.3	5.5e-37	major head protein	head and packaging
UniRef90	UHGV-0017574_33	UniRef90_A0A412ULW9	738.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0017574_33	1211817.CCAT010000053_gene2132	322.0	0	Phage capsid family	N/A
Pfam	UHGV-0017574_33	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0017574_33	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
COG	UHGV-0017574_33	COG4653	N/A	N/A	Predicted phage phi-C31 gp36 major capsid-like protein	N/A
structural_annotation	UHGV-0017574_33	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_34	phrog_749	55.3	9.9e-16	N/A	unknown function
UniRef90	UHGV-0017574_34	UniRef90_A0A1G5CMX8	109.0	5.26e-29	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-0017574_34	1211817.CCAT010000053_gene2133	59.7	0.000000000292	N/A	N/A
PHROG	UHGV-0017574_35	phrog_19734	72.6	4.6e-21	N/A	unknown function
UniRef90	UHGV-0017574_35	UniRef90_UPI00057FE645	58.9	0.00000000622	phage head closure protein	N/A
eggNOG-mapper	UHGV-0017574_35	86416.Clopa_0343	61.6	0.000000000113	N/A	N/A
NCBIFam	UHGV-0017574_35	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
structural_annotation	UHGV-0017574_35	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017574_36	PF05657,MF_00281,COG0016	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017574_37	UniRef90_UPI000E5564A4	272.0	0	HK97 gp10 family phage protein	N/A
Pfam	UHGV-0017574_37	PF04883	N/A	N/A	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
structural_annotation	UHGV-0017574_37	TIGR01725	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_38	phrog_88	71.9	8.2e-21	major tail protein	tail
UniRef90	UHGV-0017574_38	UniRef90_A0A1G5CNS8	151.0	5.5071e-43	Phage major tail protein, phi13 family	N/A
eggNOG-mapper	UHGV-0017574_38	397288.C806_05077	67.0	0.0000000000409	phage major tail protein, phi13 family	N/A
NCBIFam	UHGV-0017574_38	TIGR01603.1	N/A	N/A	major tail protein	N/A
structural_annotation	UHGV-0017574_38	PF06488,TIGR01603,COG3498	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017574_39	PF11836	N/A	N/A	N/A	N/A
KOfam	UHGV-0017574_40	K20283	62.2	1.1e-18	GOLGA4; golgin subfamily A member 4	N/A
PHROG	UHGV-0017574_40	phrog_1272	219.5	0	tail length tape measure protein	tail
UniRef90	UHGV-0017574_40	UniRef90_A0A412ULX0	1723.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0017574_40	588581.Cpap_1264	252.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0017574_40	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0017574_40	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0017574_40	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_41	phrog_33	74.6	2.2e-21	distal tail protein Dit	tail
UniRef90	UHGV-0017574_41	UniRef90_A0A1G5CPA2	132.0	6.61e-34	Phage-related protein	N/A
eggNOG-mapper	UHGV-0017574_41	1160721.RBI_I01575	89.7	1.33e-18	Phage tail protein	N/A
COG	UHGV-0017574_41	COG4722	N/A	N/A	Phage-related protein YomH	N/A
structural_annotation	UHGV-0017574_41	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_42	phrog_1067	89.7	1.1e-26	minor head protein	head and packaging
UniRef90	UHGV-0017574_42	UniRef90_A0A1G5CPD2	144.0	1.07e-35	Phage minor structural protein, N-terminal region	N/A
eggNOG-mapper	UHGV-0017574_42	1462527.CCDM010000003_gene3730	60.5	0.000000619	gp58-like protein	N/A
NCBIFam	UHGV-0017574_42	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0017574_42	COG1511	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017574_42	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0017574_43	PF10651,PF15432,PF08931,TIGR03711	N/A	N/A	N/A	N/A
PHROG	UHGV-0017574_45	phrog_199	75.5	6.1e-22	holin	lysis
UniRef90	UHGV-0017574_45	UniRef90_A0A2N0ULW7	270.0	0	Holin	N/A
eggNOG-mapper	UHGV-0017574_45	1160721.RBI_I01565	142.0	2.48997e-41	Bacteriophage holin family	N/A
Pfam	UHGV-0017574_45	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-0017574_45	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-0017574_45	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-0017574_45	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-0017574_46	K01448	54.8	0.0000000000000014	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-0017574_46	phrog_435	80.1	3.6e-23	endolysin	lysis
UniRef90	UHGV-0017574_46	UniRef90_A0A373KFY8	430.0	0	SH3b domain-containing protein	N/A
eggNOG-mapper	UHGV-0017574_46	1203606.HMPREF1526_01931	82.0	0.00000000000000374	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-0017574_46	PF01520	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_3
COG	UHGV-0017574_46	COG0860	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	N/A
structural_annotation	UHGV-0017574_46	PF01520,PF18342,NF038140,COG0860,COG4991	N/A	N/A	N/A	N/A
UniRef90	UHGV-0017574_47	UniRef90_A0A374MZ40	107.0	1.7e-29	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0017574_47	140626.JHWB01000009_gene1336	52.8	0.0000000224	sequence-specific DNA binding	N/A
Pfam	UHGV-0017574_47	PF01381	N/A	N/A	Helix-turn-helix	HTH_3
COG	UHGV-0017574_47	COG2944	N/A	N/A	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	N/A
structural_annotation	UHGV-0017574_47	PF01381,NF040522,COG2944	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0017574	Yes	39,497	38	100	1
UHGV-0008427	No	45,293	37	100	1
UHGV-0023330	No	41,459	36	100	1