vOTU vOTU-009476

vOTU: vOTU-009476

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-009476
Number of genomes	17
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00117 → vGENUS-00479 → vSUBGEN-15146 → vOTU-009476
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira
Host range breadth	Genus
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1540177
Biosample ID	SAMEA2737703
Genome length (bp)	38,040 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	91.32%
tRNA count	1
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira	Total connections	909	Host agreement	98.13
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae → Lachnospira → Lachnospira rogosae_A	Total connections	138	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
PHROG	UHGV-1540177_1	phrog_9659	57.5	3.4e-16	N/A	unknown function
UniRef90	UHGV-1540177_1	UniRef90_UPI000A26FDC2	107.0	1.18e-23	N/A	N/A
KOfam	UHGV-1540177_2	K06400	370.6	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1540177_2	phrog_95	364.7	0	integrase	integration and excision
UniRef90	UHGV-1540177_2	UniRef90_A0A413YU13	830.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-1540177_2	411462.DORLON_00823	452.0	0	Resolvase, N terminal domain	N/A
Pfam	UHGV-1540177_2	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1540177_2	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1540177_2	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1540177_2	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1540177_2	PF00239,PF07508,PF13408,NF041201,COG1961	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_3	phrog_87	80.8	1.2e-23	metallo-protease	other
UniRef90	UHGV-1540177_3	UniRef90_UPI0015EBCD4F	203.0	0	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1540177_3	397288.C806_00132	201.0	0	Zn peptidase	N/A
Pfam	UHGV-1540177_3	PF06114	N/A	N/A	IrrE N-terminal-like domain	Peptidase_M78
COG	UHGV-1540177_3	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1540177_3	PF06114,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_4	phrog_2967	50.6	0.000000000000017	transcriptional regulator	transcription regulation
UniRef90	UHGV-1540177_4	UniRef90_UPI0015D48A11	107.0	8.87e-26	transcriptional regulator	N/A
eggNOG-mapper	UHGV-1540177_4	1121947.AUHK01000002_gene902	107.0	4.77e-26	Peptidase S24-like	N/A
COG	UHGV-1540177_4	COG1974	N/A	N/A	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	N/A
UniRef90	UHGV-1540177_5	UniRef90_A0A2A7B798	90.9	2.48e-22	N/A	N/A
eggNOG-mapper	UHGV-1540177_5	171693.BN988_01635	92.4	1.02e-23	N/A	N/A
Pfam	UHGV-1540177_5	PF05339	N/A	N/A	N/A	DUF739
COG	UHGV-1540177_5	COG3655	N/A	N/A	DNA-binding transcriptional regulator, XRE family	N/A
structural_annotation	UHGV-1540177_5	PF05339,NF002773,COG1476	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_8	phrog_478	125.4	2.2e-37	site-specific recombination directionality factor RDF	integration and excision
UniRef90	UHGV-1540177_8	UniRef90_A0A373Q857	177.0	0	YopX domain-containing protein	N/A
eggNOG-mapper	UHGV-1540177_8	478749.BRYFOR_08526	99.0	6.95e-25	N/A	N/A
PHROG	UHGV-1540177_9	phrog_20040	49.3	0.000000000000054	N/A	unknown function
eggNOG-mapper	UHGV-1540177_9	1538644.KO02_12130	97.8	6.79e-26	N/A	N/A
PHROG	UHGV-1540177_12	phrog_3584	155.7	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-1540177_12	483218.BACPEC_01173	282.0	0	N/A	N/A
structural_annotation	UHGV-1540177_12	PF21578,NF041486	N/A	N/A	N/A	N/A
KOfam	UHGV-1540177_13	K03469	82.8	5.6e-24	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	N/A
PHROG	UHGV-1540177_13	phrog_531	72.5	5.7e-21	Rnase H	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540177_13	UniRef90_A0A350VVB3	119.0	1.7e-31	RNase H type-1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1540177_13	665950.HMPREF1025_02551	85.9	2.32e-19	RNase H	N/A
Pfam	UHGV-1540177_13	PF00075	N/A	N/A	RNase H	RNase_H
COG	UHGV-1540177_13	COG0328	N/A	N/A	Ribonuclease HI	N/A
structural_annotation	UHGV-1540177_13	PF00075,MF_00042,NF001236,COG0328	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1540177_14	483218.BACPEC_01167	198.0	0	N/A	N/A
PHROG	UHGV-1540177_15	phrog_8470	306.1	0	N/A	unknown function
UniRef90	UHGV-1540177_15	UniRef90_UPI00164C094F	229.0	0	PcfJ domain-containing protein	N/A
eggNOG-mapper	UHGV-1540177_15	483218.BACPEC_01166	408.0	0	PcfJ-like protein	N/A
Pfam	UHGV-1540177_15	PF14284	N/A	N/A	PcfJ-like protein	PcfJ
structural_annotation	UHGV-1540177_15	PF14284	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_16	phrog_15077	108.2	1.4e-31	N/A	unknown function
UniRef90	UHGV-1540177_16	UniRef90_A0A3E3IZW1	201.0	0	N/A	N/A
eggNOG-mapper	UHGV-1540177_16	483218.BACPEC_01165	219.0	0	N/A	N/A
structural_annotation	UHGV-1540177_16	PF11300,NF038070	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_17	phrog_355	71.8	7.8e-21	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540177_17	UniRef90_UPI0002D32D58	58.2	0.0000000262	N/A	N/A
eggNOG-mapper	UHGV-1540177_17	1095772.CAHH01000052_gene252	58.2	0.0000000044	N/A	N/A
Pfam	UHGV-1540177_17	PF14359	N/A	N/A	N/A	DUF4406
structural_annotation	UHGV-1540177_17	PF14359,TIGR03646,COG3613	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_18	phrog_625	67.8	9.1e-20	N/A	unknown function
UniRef90	UHGV-1540177_18	UniRef90_A0A413YU40	179.0	0	ASCH domain-containing protein	N/A
eggNOG-mapper	UHGV-1540177_18	397290.C810_01502	131.0	5.84e-38	N/A	N/A
structural_annotation	UHGV-1540177_18	PF04322,NF003443	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_21	phrog_36	60.7	3e-17	transcriptional regulator	transcription regulation
eggNOG-mapper	UHGV-1540177_21	397290.C810_01391	103.0	2.18e-26	N/A	N/A
structural_annotation	UHGV-1540177_21	PF02996	N/A	N/A	N/A	N/A
KOfam	UHGV-1540177_22	K03496	148.8	4.62428e-44	parA, soj; chromosome partitioning protein	N/A
PHROG	UHGV-1540177_22	phrog_164	141.1	7.70014e-42	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1540177_22	UniRef90_A0A3D5LR82	549.0	0	ParA family protein	N/A
eggNOG-mapper	UHGV-1540177_22	1410653.JHVC01000015_gene715	293.0	0	Anion-transporting ATPase	N/A
Pfam	UHGV-1540177_22	PF13614	N/A	N/A	AAA domain	AAA_31
COG	UHGV-1540177_22	COG1192	N/A	N/A	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	N/A
structural_annotation	UHGV-1540177_22	PF01656,MF_00355,NF041283,COG1192	N/A	N/A	N/A	N/A
KOfam	UHGV-1540177_25	K07474	165.7	0	xtmA; phage terminase small subunit	N/A
PHROG	UHGV-1540177_25	phrog_51	166.1	0	terminase small subunit	head and packaging
UniRef90	UHGV-1540177_25	UniRef90_A0A356C6K0	325.0	0	Terminase small subunit	N/A
eggNOG-mapper	UHGV-1540177_25	1499683.CCFF01000014_gene3916	159.0	0	Terminase small subunit	N/A
Pfam	UHGV-1540177_25	PF03592	N/A	N/A	Terminase small subunit	Terminase_2
COG	UHGV-1540177_25	COG3728	N/A	N/A	Phage terminase, small subunit	N/A
structural_annotation	UHGV-1540177_25	PF03592,COG3728	N/A	N/A	N/A	N/A
KOfam	UHGV-1540177_26	K06909	102.8	3.8e-30	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1540177_26	phrog_2	71.5	1.6e-20	terminase large subunit	head and packaging
UniRef90	UHGV-1540177_26	UniRef90_A0A413YU24	898.0	0	Terminase	N/A
eggNOG-mapper	UHGV-1540177_26	1415775.U729_2599	519.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1540177_26	PF03237	N/A	N/A	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
COG	UHGV-1540177_26	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1540177_26	PF03237,PF17289,MF_04148,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_27	phrog_533	272.9	0	portal protein	head and packaging
UniRef90	UHGV-1540177_27	UniRef90_A0A3D5LTG9	967.0	0	Capsid protein	N/A
eggNOG-mapper	UHGV-1540177_27	33035.JPJF01000093_gene2257	573.0	0	N/A	N/A
structural_annotation	UHGV-1540177_27	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_28	phrog_581	245.9	0	minor head protein	head and packaging
UniRef90	UHGV-1540177_28	UniRef90_A0A3D5LQU4	878.0	0	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1540177_28	33035.JPJF01000093_gene2255	448.0	0	N/A	N/A
Pfam	UHGV-1540177_28	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1540177_28	PF03496	N/A	N/A	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
COG	UHGV-1540177_28	COG5585	N/A	N/A	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	N/A
structural_annotation	UHGV-1540177_28	PF06152,PF01129,NF041404	N/A	N/A	N/A	N/A
UniRef90	UHGV-1540177_32	UniRef90_R9JJZ1	67.4	0.000000000000167	RHH_1 domain-containing protein	N/A
eggNOG-mapper	UHGV-1540177_32	397287.C807_01320	67.4	0.000000000000028	N/A	N/A
structural_annotation	UHGV-1540177_32	PF12651,NF041793,COG4710	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_33	phrog_1760	123.1	2.6e-36	anti-termination protein	transcription regulation
UniRef90	UHGV-1540177_33	UniRef90_C0CPS8	277.0	0	ORF6N domain-containing protein	N/A
eggNOG-mapper	UHGV-1540177_33	476272.RUMHYD_02879	277.0	0	ORF6N domain	N/A
Pfam	UHGV-1540177_33	PF10543	N/A	N/A	ORF6N domain	ORF6N
structural_annotation	UHGV-1540177_33	PF10543,PF13058,TIGR02681,COG3646,COG2856	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_34	phrog_2303	138.0	6.59998e-41	head scaffolding protein	head and packaging
eggNOG-mapper	UHGV-1540177_34	483218.BACPEC_01156	134.0	2.87e-36	N/A	N/A
PHROG	UHGV-1540177_35	phrog_422	263.6	0	major head protein	head and packaging
UniRef90	UHGV-1540177_35	UniRef90_A0A3D5M0U8	499.0	0	Phage capsid protein	N/A
eggNOG-mapper	UHGV-1540177_35	663278.Ethha_1589	376.0	0	N/A	N/A
structural_annotation	UHGV-1540177_35	PF19821,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_36	phrog_541	69.7	4e-20	head-tail adaptor	connector
eggNOG-mapper	UHGV-1540177_36	1304866.K413DRAFT_0783	148.0	1.96182e-44	N/A	N/A
PHROG	UHGV-1540177_37	phrog_8710	138.3	1.99993e-41	N/A	unknown function
eggNOG-mapper	UHGV-1540177_37	483218.BACPEC_01152	119.0	1.92e-33	N/A	N/A
structural_annotation	UHGV-1540177_37	PF10665,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_38	phrog_556	55.1	0.0000000000000011	minor head protein	head and packaging
eggNOG-mapper	UHGV-1540177_38	742740.HMPREF9474_03509	138.0	2.04e-40	N/A	N/A
PHROG	UHGV-1540177_39	phrog_2595	92.4	3.8e-27	head-tail connector protein	connector
UniRef90	UHGV-1540177_39	UniRef90_UPI001D068DAC	141.0	1.07e-40	minor capsid protein	N/A
eggNOG-mapper	UHGV-1540177_39	742740.HMPREF9474_03510	136.0	1.19e-39	N/A	N/A
Pfam	UHGV-1540177_39	PF12691	N/A	N/A	Bacteriophage minor capsid protein	Minor_capsid_3
structural_annotation	UHGV-1540177_39	PF12691,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_40	phrog_820	111.3	5.8e-33	major tail protein	tail
UniRef90	UHGV-1540177_40	UniRef90_T3DDR1	181.0	0	Phage major tail 2 family protein	N/A
eggNOG-mapper	UHGV-1540177_40	1151292.QEW_2426	181.0	0	N/A	N/A
structural_annotation	UHGV-1540177_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_41	phrog_8300	69.5	3.6e-20	N/A	unknown function
eggNOG-mapper	UHGV-1540177_41	1151292.QEW_2425	68.6	0.000000000000152	N/A	N/A
structural_annotation	UHGV-1540177_41	PF06896	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_42	phrog_8355	101.1	3.4e-30	N/A	unknown function
UniRef90	UHGV-1540177_42	UniRef90_UPI0006BBA9AA	144.0	4.76021e-42	Gp15 family bacteriophage protein	N/A
eggNOG-mapper	UHGV-1540177_42	394503.Ccel_3036	116.0	5.84e-32	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1540177_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1540177_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_43	phrog_1535	229.9	0	tail length tape measure protein	tail
UniRef90	UHGV-1540177_43	UniRef90_A0A1C5PIN9	407.0	0	Phage-related protein	N/A
eggNOG-mapper	UHGV-1540177_43	33035.JPJF01000093_gene2243	349.0	0	phage tail tape measure protein	N/A
COG	UHGV-1540177_43	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
structural_annotation	UHGV-1540177_43	PF20155,TIGR01760,COG3941	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_44	phrog_1194	75.3	6.9e-22	N/A	unknown function
eggNOG-mapper	UHGV-1540177_44	33035.JPJF01000093_gene2242	154.0	0	N/A	N/A
structural_annotation	UHGV-1540177_44	PF20458,TIGR02126,COG3499	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_45	phrog_1401	49.1	0.000000000000088	N/A	unknown function
UniRef90	UHGV-1540177_45	UniRef90_UPI001D00FC65	58.9	0.0000000166	N/A	N/A
eggNOG-mapper	UHGV-1540177_45	1232453.BAIF02000058_gene1640	58.2	0.00000000399	N/A	N/A
structural_annotation	UHGV-1540177_45	PF07761	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_46	phrog_6616	164.7	0	tail protein	tail
UniRef90	UHGV-1540177_46	UniRef90_A0A8D9PGP3	582.0	0	Minor structural protein	N/A
eggNOG-mapper	UHGV-1540177_46	1294142.CINTURNW_1706	252.0	0	Phage minor structural protein	N/A
COG	UHGV-1540177_46	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-1540177_46	PF14594,NF033848,COG3500	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1540177_47	PF08931	N/A	N/A	N/A	N/A
PHROG	UHGV-1540177_49	phrog_199	58.5	8.7e-17	holin	lysis
UniRef90	UHGV-1540177_49	UniRef90_A0A3D5LSL4	264.0	0	Holin	N/A
eggNOG-mapper	UHGV-1540177_49	411470.RUMGNA_02086	187.0	0	N/A	N/A
Pfam	UHGV-1540177_49	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1540177_49	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1540177_49	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1540177_49	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1540177_50	K07273	83.1	4.2e-24	acm; lysozyme	N/A
PHROG	UHGV-1540177_50	phrog_291	75.6	7.8e-22	endolysin	lysis
UniRef90	UHGV-1540177_50	UniRef90_A0A174PB89	647.0	0	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	N/A
eggNOG-mapper	UHGV-1540177_50	469596.HMPREF9488_01959	123.0	3.21e-29	Glycosyl hydrolase family 25	N/A
Pfam	UHGV-1540177_50	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1540177_50	COG3757	N/A	N/A	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	N/A
structural_annotation	UHGV-1540177_50	PF01183,PF11623,COG3757,COG2139	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1540177	Yes	38,040	36	100	1
UHGV-0202313	No	38,977	36	100	1
UHGV-2022013	No	38,586	36	100	1
UHGV-0077624	No	38,222	36	100	1
UHGV-2054044	No	38,107	36	100	1
UHGV-0085451	No	38,063	36	100	1
UHGV-1451236	No	38,063	36	100	1
UHGV-0129136	No	37,927	36	100	1
UHGV-1543205	No	22,520	38	59	1
UHGV-0098431	No	21,286	35	56	1
UHGV-2078841	No	20,669	35	54	1
UHGV-2112079	No	16,481	38	43	1
UHGV-1845851	No	16,094	38	42	1
UHGV-1827093	No	15,293	38	40	1
UHGV-1845614	No	15,010	38	39	1
UHGV-1546274	No	11,327	37	30	1
UHGV-2187818	No	10,152	36	27	1