vOTU vOTU-009621

vOTU: vOTU-009621

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-009621
Number of genomes	13
Taxonomy (ICTV)	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00431 → vGENUS-01057 → vSUBGEN-31610 → vOTU-009621
Host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae
Host range breadth	Family
Lifestyle	temperate (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0021357
Biosample ID	N/A
Genome length (bp)	35,780 bps
CheckV completeness	99.90% (High-quality)
CDS count	54
CDS density	92.36%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	384	Host agreement	98.7
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Lachnospirales → Lachnospiraceae	Total connections	6	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-0021357_1	UniRef90_R6G3J8	70.9	0.00000000000000159	(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-0021357_1	411468.CLOSCI_00530	53.9	0.000000037	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
COG	UHGV-0021357_1	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A
eggNOG-mapper	UHGV-0021357_2	411902.CLOBOL_03857	140.0	3.24e-40	N/A	N/A
structural_annotation	UHGV-0021357_2	PF08797	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021357_3	UniRef90_A0A6N7SMT7	122.0	4.04e-35	Helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-0021357_3	536227.CcarbDRAFT_4360	92.4	8.43e-24	N/A	N/A
Pfam	UHGV-0021357_3	PF07022	N/A	N/A	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
structural_annotation	UHGV-0021357_3	PF13443,NF000090,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021357_5	UniRef90_A0A2K4ZGQ9	65.9	0.0000000000032	DarA_C domain-containing protein	N/A
KOfam	UHGV-0021357_7	K06400	328.8	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-0021357_7	phrog_95	364.7	0	integrase	integration and excision
UniRef90	UHGV-0021357_7	UniRef90_A0A374JP43	1130.0	0	Recombinase family protein	N/A
eggNOG-mapper	UHGV-0021357_7	411468.CLOSCI_00582	744.0	0	Recombinase	N/A
Pfam	UHGV-0021357_7	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-0021357_7	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-0021357_7	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-0021357_7	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-0021357_7	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021357_8	UniRef90_A0A415MTA4	233.0	0	XRE family transcriptional regulator	N/A
eggNOG-mapper	UHGV-0021357_8	1226325.HMPREF1548_06747	70.1	0.0000000000000822	Cro/C1-type HTH DNA-binding domain	N/A
Pfam	UHGV-0021357_8	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
UniRef90	UHGV-0021357_11	UniRef90_A0A374JR06	115.0	1.84e-32	DNA-binding protein	N/A
eggNOG-mapper	UHGV-0021357_11	1226325.HMPREF1548_06746	65.9	0.000000000000384	N/A	N/A
KOfam	UHGV-0021357_13	K06223	225.1	0	dam; DNA adenine methylase [EC:2.1.1.72]	N/A
PHROG	UHGV-0021357_13	phrog_56	188.6	0	DNA methyltransferase	other
UniRef90	UHGV-0021357_13	UniRef90_A0A174XJ17	386.0	0	Site-specific DNA-methyltransferase (adenine-specific)	N/A
eggNOG-mapper	UHGV-0021357_13	411468.CLOSCI_00571	385.0	0	D12 class N6 adenine-specific DNA methyltransferase	N/A
PADLOC	UHGV-0021357_13	MTase_II_00030	278.5	0	Type II methyltransferase	RM
Pfam	UHGV-0021357_13	PF02086	N/A	N/A	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
COG	UHGV-0021357_13	COG0338	N/A	N/A	DNA-adenine methylase	N/A
structural_annotation	UHGV-0021357_13	PF02086,MF_01872,NF008152,COG0338	N/A	N/A	N/A	N/A
structural_annotation	UHGV-0021357_14	PF13058	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021357_17	411468.CLOSCI_00572	83.2	1.92e-18	N/A	N/A
PHROG	UHGV-0021357_19	phrog_20014	58.5	6.8e-17	N/A	unknown function
eggNOG-mapper	UHGV-0021357_19	1235798.C817_02590	75.5	9.66e-17	N/A	N/A
PHROG	UHGV-0021357_20	phrog_22740	90.0	1.6e-26	N/A	unknown function
UniRef90	UHGV-0021357_20	UniRef90_A0A174XE96	168.0	0	DNA N-6-adenine-methyltransferase of bacteriophage	N/A
eggNOG-mapper	UHGV-0021357_20	411468.CLOSCI_00567	116.0	3.7e-31	DNA N-6-adenine-methyltransferase	N/A
PADLOC	UHGV-0021357_20	oMTase_00015	87.6	2.5e-25	orphan methyltransferase	RM
Pfam	UHGV-0021357_20	PF05869	N/A	N/A	DNA N-6-adenine-methyltransferase (Dam)	Dam
PHROG	UHGV-0021357_21	phrog_25385	77.8	1.1e-22	N/A	unknown function
UniRef90	UHGV-0021357_21	UniRef90_UPI00189D9989	197.0	0	DNA cytosine methyltransferase	N/A
eggNOG-mapper	UHGV-0021357_21	411468.CLOSCI_00565	115.0	4.8e-31	N/A	N/A
structural_annotation	UHGV-0021357_21	PF02970	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_23	phrog_24386	121.9	3.8e-36	N/A	unknown function
eggNOG-mapper	UHGV-0021357_23	411468.CLOSCI_00562	181.0	0	COG NOG28949 non supervised orthologous group	N/A
COG	UHGV-0021357_23	COG0241	N/A	N/A	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	N/A
structural_annotation	UHGV-0021357_23	TIGR01689,COG0241	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_26	phrog_3584	240.0	0	replication initiation protein	DNA, RNA and nucleotide metabolism
eggNOG-mapper	UHGV-0021357_26	411468.CLOSCI_00558	426.0	0	N/A	N/A
structural_annotation	UHGV-0021357_26	PF21578	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_27	phrog_824	123.2	1e-36	N/A	unknown function
UniRef90	UHGV-0021357_27	UniRef90_A0A374JR68	335.0	0	VRR-NUC domain-containing protein	N/A
eggNOG-mapper	UHGV-0021357_27	411468.CLOSCI_00556	240.0	0	VRR_NUC	N/A
Pfam	UHGV-0021357_27	PF08774	N/A	N/A	VRR-NUC domain	VRR_NUC
eggNOG-mapper	UHGV-0021357_29	411468.CLOSCI_00554	120.0	7.24e-34	N/A	N/A
PHROG	UHGV-0021357_30	phrog_119	64.2	1.8e-18	HNH endonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021357_30	UniRef90_A0A374JQS6	231.0	0	HNH endonuclease	N/A
eggNOG-mapper	UHGV-0021357_30	411468.CLOSCI_00553	134.0	2.76e-39	HNH endonuclease	N/A
COG	UHGV-0021357_30	COG1403	N/A	N/A	5-methylcytosine-specific restriction endonuclease McrA	N/A
PHROG	UHGV-0021357_31	phrog_1066	54.7	0.0000000000000015	N/A	unknown function
eggNOG-mapper	UHGV-0021357_31	411468.CLOSCI_00552	76.3	0.00000000000000131	N/A	N/A
PHROG	UHGV-0021357_32	phrog_9	343.7	0	terminase large subunit	head and packaging
UniRef90	UHGV-0021357_32	UniRef90_A0A374JP15	1102.0	0	Terminase large subunit	N/A
eggNOG-mapper	UHGV-0021357_32	411468.CLOSCI_00551	901.0	0	COG COG4626 Phage terminase-like protein, large subunit	N/A
Pfam	UHGV-0021357_32	PF03354	N/A	N/A	Terminase large subunit, ATPase domain	TerL_ATPase
Pfam	UHGV-0021357_32	PF20441	N/A	N/A	Terminase large subunit, endonuclease domain	TerL_nuclease
COG	UHGV-0021357_32	COG4626	N/A	N/A	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	N/A
structural_annotation	UHGV-0021357_32	PF20441,PF03354,MF_04146,TIGR01547,COG4626	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_33	phrog_12	174.6	0	portal protein	head and packaging
UniRef90	UHGV-0021357_33	UniRef90_A0A374JP76	780.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-0021357_33	411468.CLOSCI_00550	616.0	0	Phage portal protein	N/A
Pfam	UHGV-0021357_33	PF04860	N/A	N/A	Phage portal protein	Phage_portal
COG	UHGV-0021357_33	COG4695	N/A	N/A	Phage portal protein BeeE	N/A
structural_annotation	UHGV-0021357_33	PF04860,MF_04135,TIGR01537,COG4695	N/A	N/A	N/A	N/A
KOfam	UHGV-0021357_34	K01358	140.6	1.40004e-41	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	N/A
PHROG	UHGV-0021357_34	phrog_94	208.8	0	head maturation protease	head and packaging
UniRef90	UHGV-0021357_34	UniRef90_A0A374JQH6	493.0	0	ATP-dependent Clp protease proteolytic subunit	N/A
eggNOG-mapper	UHGV-0021357_34	411468.CLOSCI_00549	333.0	0	COG COG0740 Protease subunit of ATP-dependent Clp proteases	N/A
Pfam	UHGV-0021357_34	PF00574	N/A	N/A	Clp protease	CLP_protease
COG	UHGV-0021357_34	COG0740	N/A	N/A	ATP-dependent protease ClpP, protease subunit	N/A
structural_annotation	UHGV-0021357_34	PF00574,MF_00444,NF011090,COG0740	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_35	phrog_10	129.0	4.1e-38	major head protein	head and packaging
UniRef90	UHGV-0021357_35	UniRef90_A0A374JNW0	776.0	0	Phage major capsid protein	N/A
eggNOG-mapper	UHGV-0021357_35	411468.CLOSCI_00548	599.0	0	Phage capsid family	N/A
Pfam	UHGV-0021357_35	PF05065	N/A	N/A	Phage capsid family	Phage_capsid
NCBIFam	UHGV-0021357_35	TIGR01554.2	N/A	N/A	phage major capsid protein	N/A
structural_annotation	UHGV-0021357_35	PF05065,MF_04119,TIGR01554,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_36	phrog_5223	54.4	0.0000000000000015	neck protein	connector
UniRef90	UHGV-0021357_36	UniRef90_A0A174XIL0	127.0	2.23e-36	N/A	N/A
eggNOG-mapper	UHGV-0021357_36	411468.CLOSCI_00547	121.0	7.21e-35	N/A	N/A
PHROG	UHGV-0021357_37	phrog_1951	66.3	3.5e-19	head-tail adaptor	connector
UniRef90	UHGV-0021357_37	UniRef90_UPI00189EBA11	172.0	0	phage head closure protein	N/A
NCBIFam	UHGV-0021357_37	TIGR01563.1	N/A	N/A	phage head closure protein	N/A
COG	UHGV-0021357_37	COG5614	N/A	N/A	Phage head-tail adaptor	N/A
structural_annotation	UHGV-0021357_37	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_38	phrog_5	43.5	0.0000000000078	tail completion or Neck1 protein	connector
UniRef90	UHGV-0021357_38	UniRef90_UPI001C00E12E	124.0	3.72e-34	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-0021357_38	457421.CBFG_03712	128.0	2.32e-36	N/A	N/A
structural_annotation	UHGV-0021357_38	PF20039,TIGR01725,COG5005	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021357_39	411468.CLOSCI_00544	130.0	5.88e-38	N/A	N/A
structural_annotation	UHGV-0021357_39	PF20765	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_40	phrog_2175	79.8	3.4e-23	protein with Ig domain	other
eggNOG-mapper	UHGV-0021357_40	411468.CLOSCI_00543	199.0	0	N/A	N/A
structural_annotation	UHGV-0021357_40	PF04630,TIGR01603,COG5437	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021357_41	411468.CLOSCI_00542	148.0	5.60519e-45	N/A	N/A
structural_annotation	UHGV-0021357_41	PF17388	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_42	phrog_1272	455.8	0	tail length tape measure protein	tail
UniRef90	UHGV-0021357_42	UniRef90_A0A374JNY3	1299.0	0	PhageMin_Tail domain-containing protein	N/A
eggNOG-mapper	UHGV-0021357_42	588581.Cpap_1264	417.0	0	Tail tape measure protein, TP901 family	N/A
Pfam	UHGV-0021357_42	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
COG	UHGV-0021357_42	COG5280	N/A	N/A	Phage-related minor tail protein	N/A
structural_annotation	UHGV-0021357_42	PF10145,TIGR01760,COG5280	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_43	phrog_33	79.8	5.4e-23	distal tail protein Dit	tail
UniRef90	UHGV-0021357_43	UniRef90_R6GVG8	174.0	0	Phage putative tail component N-domain protein	N/A
eggNOG-mapper	UHGV-0021357_43	1567011.A0A0A7RWN1_9VIRU	104.0	2.07e-24	Phage tail protein	N/A
Pfam	UHGV-0021357_43	PF05709	N/A	N/A	Phage tail protein RIFT-related domain	Sipho_tail
structural_annotation	UHGV-0021357_43	PF20195,TIGR01633,COG4722	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_44	phrog_1067	425.9	0	minor head protein	head and packaging
UniRef90	UHGV-0021357_44	UniRef90_UPI00189EFADE	1831.0	0	phage tail protein	N/A
eggNOG-mapper	UHGV-0021357_44	1160721.RBI_I01574	423.0	0	Prophage endopeptidase tail	N/A
Pfam	UHGV-0021357_44	PF06605	N/A	N/A	Prophage endopeptidase tail	Prophage_tail
NCBIFam	UHGV-0021357_44	TIGR01665.1	N/A	N/A	phage tail spike protein	N/A
COG	UHGV-0021357_44	COG4926	N/A	N/A	Phage-related protein	N/A
structural_annotation	UHGV-0021357_44	PF14594,TIGR01665,COG4926	N/A	N/A	N/A	N/A
PHROG	UHGV-0021357_47	phrog_17147	269.0	0	N/A	unknown function
UniRef90	UHGV-0021357_47	UniRef90_A0A374JQW7	1253.0	0	N/A	N/A
eggNOG-mapper	UHGV-0021357_47	33035.JPJF01000043_gene1001	239.0	0	N/A	N/A
Pfam	UHGV-0021357_47	PF10651	N/A	N/A	BppU N-terminal domain	BppU_N
structural_annotation	UHGV-0021357_47	PF10651	N/A	N/A	N/A	N/A
KOfam	UHGV-0021357_48	K00986	99.3	4.5e-29	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-0021357_48	phrog_1423	150.8	1.4013e-45	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-0021357_48	UniRef90_A0A374JNY7	771.0	0	Reverse transcriptase domain-containing protein	N/A
eggNOG-mapper	UHGV-0021357_48	33035.JPJF01000043_gene1000	263.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
PADLOC	UHGV-0021357_48	pfam00078	54.6	0.0000000000000027	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; acquisition_associated	CRISPR-CAS
Pfam	UHGV-0021357_48	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-0021357_48	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
structural_annotation	UHGV-0021357_48	PF00078,MF_04065,TIGR04416,COG3344	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-0021357_51	742733.HMPREF9469_01798	62.0	0.0000000000183	N/A	N/A
PHROG	UHGV-0021357_52	phrog_263	80.0	1.7e-23	holin	lysis
UniRef90	UHGV-0021357_52	UniRef90_R6GD40	161.0	0	Holin SPP1 family	N/A
eggNOG-mapper	UHGV-0021357_52	764291.STRUR_2085	82.8	1.75e-19	SPP1 phage holin	N/A
Pfam	UHGV-0021357_52	PF04688	N/A	N/A	SPP1 phage holin	Holin_SPP1
NCBIFam	UHGV-0021357_52	TIGR01592.1	N/A	N/A	phage holin	N/A
structural_annotation	UHGV-0021357_52	PF04688,TIGR01592	N/A	N/A	N/A	N/A
KOfam	UHGV-0021357_53	K07273	191.8	0	acm; lysozyme	N/A
PHROG	UHGV-0021357_53	phrog_291	214.0	0	endolysin	lysis
UniRef90	UHGV-0021357_53	UniRef90_A0A374JNX4	649.0	0	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-0021357_53	521003.COLINT_02363	293.0	0	CW_7 repeat	N/A
Pfam	UHGV-0021357_53	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
Pfam	UHGV-0021357_53	PF08230	N/A	N/A	CW_7 repeat	CW_7
Pfam	UHGV-0021357_53	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-0021357_53	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-0021357_53	PF01183,PF01476,TIGR02899,COG3757,COG1388	N/A	N/A	N/A	N/A
UniRef90	UHGV-0021357_54	UniRef90_A0A3D2X9C1	90.9	5.85e-22	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB (Fragment)	N/A
eggNOG-mapper	UHGV-0021357_54	537007.BLAHAN_04736	103.0	7.85e-26	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	N/A
Pfam	UHGV-0021357_54	PF00919	N/A	N/A	N/A	UPF0004
COG	UHGV-0021357_54	COG0621	N/A	N/A	tRNA A37 methylthiotransferase MiaB	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-0021357	Yes	35,780	45	100	1
UHGV-0029012	No	38,171	45	100	1
UHGV-0012031	No	35,674	45	100	1
UHGV-0004828	No	34,314	45	97	1
UHGV-0002395	No	28,456	45	80	1
UHGV-0041087	No	23,135	46	65	1
UHGV-0025107	No	22,463	46	64	1
UHGV-0037588	No	21,544	45	61	1
UHGV-0037593	No	20,056	45	57	1
UHGV-0036714	No	18,690	45	54	1
UHGV-0182158	No	15,246	46	43	1
UHGV-1842626	No	12,132	46	34	1
UHGV-0176252	No	11,057	45	31	1