vOTU vOTU-009802

vOTU: vOTU-009802

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-009802
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 → vSUBFAM-00680 → vGENUS-18216 → vSUBGEN-34369 → vOTU-009802
Host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885
Host range breadth	Species
Lifestyle	temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1416579
Biosample ID	N/A
Genome length (bp)	34,800 bps
CheckV completeness	99.90% (High-quality)
CDS count	50
CDS density	94.64%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885	Total connections	168	Host agreement	97.62
PHIST-predicted host lineage	Bacteria → Firmicutes_A → Clostridia → Oscillospirales → Ruminococcaceae → CAG-353 → CAG-353 sp900066885	Total connections	131	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 99.9)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
UniRef90	UHGV-1416579_1	UniRef90_E9SBC1	74.3	0.00000000000000155	Conserved domain protein	N/A
eggNOG-mapper	UHGV-1416579_1	411474.COPEUT_02431	126.0	1.24e-36	cytochrome o ubiquinol oxidase protein CyoD K02300	N/A
structural_annotation	UHGV-1416579_2	PF19481,PF01978,MF_01909,NF040939,COG5625	N/A	N/A	N/A	N/A
KOfam	UHGV-1416579_4	K06400	359.0	0	spoIVCA; site-specific DNA recombinase	N/A
PHROG	UHGV-1416579_4	phrog_95	338.4	0	integrase	integration and excision
UniRef90	UHGV-1416579_4	UniRef90_A0A1C6GEY5	950.0	0	Resolvase, N terminal domain	N/A
eggNOG-mapper	UHGV-1416579_4	537013.CLOSTMETH_02040	329.0	0	N/A	N/A
Pfam	UHGV-1416579_4	PF00239	N/A	N/A	Resolvase, N terminal domain	Resolvase
Pfam	UHGV-1416579_4	PF07508	N/A	N/A	Recombinase	Recombinase
Pfam	UHGV-1416579_4	PF13408	N/A	N/A	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
COG	UHGV-1416579_4	COG1961	N/A	N/A	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	N/A
structural_annotation	UHGV-1416579_4	PF07508,PF00239,NF041201,COG1961	N/A	N/A	N/A	N/A
UniRef90	UHGV-1416579_5	UniRef90_R6SEH3	147.0	3.25999e-40	TPR Domain containing protein	N/A
structural_annotation	UHGV-1416579_5	PF18768,MF_00994,NF008756,COG5010	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_6	phrog_4980	119.6	1.6e-36	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1416579_6	UniRef90_A0A1C6GF39	647.0	0	Host cell surface-exposed lipoprotein	N/A
eggNOG-mapper	UHGV-1416579_6	1120998.AUFC01000030_gene2202	81.6	0.00000000000000425	Membrane	N/A
Pfam	UHGV-1416579_6	PF07553	N/A	N/A	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
COG	UHGV-1416579_6	COG3064	N/A	N/A	Membrane protein TolA involved in colicin uptake	N/A
PHROG	UHGV-1416579_7	phrog_87	75.5	5.4e-22	metallo-protease	other
UniRef90	UHGV-1416579_7	UniRef90_A0A7X9BSM0	139.0	1.1e-39	ImmA/IrrE family metallo-endopeptidase	N/A
eggNOG-mapper	UHGV-1416579_7	1507.HMPREF0262_00423	107.0	5.9e-28	IrrE N-terminal-like domain	N/A
COG	UHGV-1416579_7	COG2856	N/A	N/A	Zn-dependent peptidase ImmA, M78 family	N/A
structural_annotation	UHGV-1416579_7	PF06114,COG2856	N/A	N/A	N/A	N/A
KOfam	UHGV-1416579_8	K07727	48.8	0.00000000000016	K07727; putative transcriptional regulator	N/A
UniRef90	UHGV-1416579_8	UniRef90_A0A1C6GF80	291.0	0	Predicted transcriptional regulator	N/A
eggNOG-mapper	UHGV-1416579_8	1235793.C809_00679	62.0	0.00000000023	Helix-turn-helix XRE-family like proteins	N/A
Pfam	UHGV-1416579_8	PF13443	N/A	N/A	Cro/C1-type HTH DNA-binding domain	HTH_26
structural_annotation	UHGV-1416579_8	PF12844,MF_00535,NF041951,COG1396	N/A	N/A	N/A	N/A
UniRef90	UHGV-1416579_9	UniRef90_UPI00164C9F56	60.8	0.0000000000752	helix-turn-helix domain-containing protein	N/A
eggNOG-mapper	UHGV-1416579_9	929506.CbC4_1187	60.8	0.0000000000136	N/A	N/A
structural_annotation	UHGV-1416579_9	PF05339,NF041951,COG1476	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1416579_11	PF11614,TIGR02588,COG2847	N/A	N/A	N/A	N/A
UniRef90	UHGV-1416579_13	UniRef90_A0A352A2H2	56.2	0.0000000177	DNA-binding protein	N/A
eggNOG-mapper	UHGV-1416579_13	929506.CbC4_1187	57.4	0.00000000107	N/A	N/A
PHROG	UHGV-1416579_14	phrog_5079	71.8	6.4e-21	N/A	unknown function
eggNOG-mapper	UHGV-1416579_14	1122143.AUEG01000001_gene582	57.0	0.000000000126	N/A	N/A
structural_annotation	UHGV-1416579_16	MF_00273	N/A	N/A	N/A	N/A
Pfam	UHGV-1416579_18	PF13384	N/A	N/A	Homeodomain-like domain	HTH_23
PHROG	UHGV-1416579_20	phrog_561	148.9	2.24208e-44	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1416579_20	UniRef90_UPI0011C8A287	243.0	0	recombinase RecT	N/A
eggNOG-mapper	UHGV-1416579_20	33035.JPJF01000071_gene4462	220.0	0	N/A	N/A
structural_annotation	UHGV-1416579_20	PF03837,TIGR01913	N/A	N/A	N/A	N/A
KOfam	UHGV-1416579_21	K03546	40.9	0.0000000000038	sbcC, rad50; DNA repair protein SbcC/Rad50	N/A
PHROG	UHGV-1416579_21	phrog_1499	293.3	0	N/A	unknown function
UniRef90	UHGV-1416579_21	UniRef90_A0A1C6FNE5	889.0	0	Chromosome segregation protein	N/A
eggNOG-mapper	UHGV-1416579_21	1120998.AUFC01000030_gene2215	610.0	0	DNA recombination	N/A
Pfam	UHGV-1416579_21	PF13476	N/A	N/A	AAA domain	AAA_23
COG	UHGV-1416579_21	COG0497	N/A	N/A	DNA repair ATPase RecN	N/A
structural_annotation	UHGV-1416579_21	PF11398,MF_00365,NF008121,COG0497	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_22	phrog_1227	256.6	0	exonuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1416579_22	UniRef90_UPI00041F978E	302.0	0	PD-(D/E)XK nuclease-like domain-containing protein	N/A
eggNOG-mapper	UHGV-1416579_22	1120998.AUFC01000030_gene2216	302.0	0	N/A	N/A
Pfam	UHGV-1416579_22	PF12684	N/A	N/A	N/A	DUF3799
COG	UHGV-1416579_22	COG1074	N/A	N/A	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	N/A
structural_annotation	UHGV-1416579_22	PF12684,TIGR01896,COG4343	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_23	phrog_3490	151.4	4.2039e-45	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1416579_23	UniRef90_A0A1C6FNL5	306.0	0	ERCC4 domain-containing protein	N/A
eggNOG-mapper	UHGV-1416579_23	357809.Cphy_2986	180.0	0	N/A	N/A
Pfam	UHGV-1416579_23	PF02732	N/A	N/A	ERCC4 domain	ERCC4
structural_annotation	UHGV-1416579_23	PF03834,NF040956,COG1948	N/A	N/A	N/A	N/A
KOfam	UHGV-1416579_24	K03111	115.1	9.6e-34	ssb; single-strand DNA-binding protein	N/A
PHROG	UHGV-1416579_24	phrog_44	127.2	1.2e-37	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1416579_24	UniRef90_A0A1C6FN64	263.0	0	Single-stranded DNA-binding protein	N/A
eggNOG-mapper	UHGV-1416579_24	1384066.JAGT01000001_gene1404	146.0	1.02015e-42	Single-stranded DNA-binding protein	N/A
Pfam	UHGV-1416579_24	PF00436	N/A	N/A	Single-strand binding protein family	SSB
NCBIFam	UHGV-1416579_24	TIGR00621.2	N/A	N/A	single-stranded DNA-binding protein	N/A
COG	UHGV-1416579_24	COG0629	N/A	N/A	Single-stranded DNA-binding protein	N/A
HAMAP	UHGV-1416579_24	MF_00984	N/A	N/A	Single-stranded DNA-binding protein	N/A
structural_annotation	UHGV-1416579_24	PF00436,MF_00984,NF005241,COG0629	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_25	phrog_2562	186.1	0	replication initiation protein	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1416579_25	UniRef90_A0A1C6GFP7	501.0	0	N/A	N/A
eggNOG-mapper	UHGV-1416579_25	290402.Cbei_1623	199.0	0	N/A	N/A
Pfam	UHGV-1416579_25	PF14297	N/A	N/A	Lin1244/Lin1753-like, N-terminal	Lin1244_N
COG	UHGV-1416579_25	COG3935	N/A	N/A	DNA replication protein DnaD	N/A
structural_annotation	UHGV-1416579_25	PF14297,TIGR01714	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1416579_28	TIGR01636	N/A	N/A	N/A	N/A
KOfam	UHGV-1416579_30	K06909	406.3	0	xtmB; phage terminase large subunit	N/A
PHROG	UHGV-1416579_30	phrog_3717	159.4	0	terminase large subunit	head and packaging
UniRef90	UHGV-1416579_30	UniRef90_A0A1C6GFY7	1056.0	0	Phage terminase, large subunit, PBSX family	N/A
eggNOG-mapper	UHGV-1416579_30	411461.DORFOR_01162	597.0	0	Phage terminase, large subunit, PBSX family	N/A
Pfam	UHGV-1416579_30	PF04466	N/A	N/A	Phage terminase large subunit	Terminase_3
Pfam	UHGV-1416579_30	PF17288	N/A	N/A	Terminase RNAseH like domain	Terminase_3C
NCBIFam	UHGV-1416579_30	TIGR01547.1	N/A	N/A	PBSX family phage terminase large subunit	N/A
COG	UHGV-1416579_30	COG1783	N/A	N/A	Phage terminase large subunit	N/A
structural_annotation	UHGV-1416579_30	PF04466,PF17288,MF_04145,TIGR01547,COG1783	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_31	phrog_533	342.4	0	portal protein	head and packaging
UniRef90	UHGV-1416579_31	UniRef90_A0A1C6GG74	880.0	0	Phage portal protein, putative, A118 family	N/A
eggNOG-mapper	UHGV-1416579_31	642492.Clole_0815	345.0	0	N/A	N/A
Pfam	UHGV-1416579_31	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1416579_31	PF05133,MF_04120,TIGR01542,COG5511	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_32	phrog_581	346.4	0	minor head protein	head and packaging
UniRef90	UHGV-1416579_32	UniRef90_A0A1C6GGW2	757.0	0	Phage minor capsid protein 2	N/A
eggNOG-mapper	UHGV-1416579_32	1151292.QEW_4539	332.0	0	N/A	N/A
Pfam	UHGV-1416579_32	PF06152	N/A	N/A	Phage minor capsid protein 2	Phage_min_cap2
Pfam	UHGV-1416579_32	PF15542	N/A	N/A	Bacterial toxin 50	Ntox50
COG	UHGV-1416579_32	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1416579_32	PF06152,PF15542	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1416579_33	PF11607,MF_01077,NF037951,COG4568	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_34	phrog_194	109.7	2.8e-32	head scaffolding protein	head and packaging
UniRef90	UHGV-1416579_34	UniRef90_A0A1C6GGD5	327.0	0	Phage minor structural protein GP20	N/A
eggNOG-mapper	UHGV-1416579_34	411490.ANACAC_00778	124.0	2.85e-33	COG NOG36366 non supervised orthologous group	N/A
Pfam	UHGV-1416579_34	PF06810	N/A	N/A	Phage minor structural protein GP20	Phage_GP20
structural_annotation	UHGV-1416579_34	PF06810,MF_02110	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_35	phrog_422	225.7	0	major head protein	head and packaging
UniRef90	UHGV-1416579_35	UniRef90_A0A345MKD0	343.0	0	Main capsid protein	N/A
eggNOG-mapper	UHGV-1416579_35	1160721.RBI_II00538	320.0	0	N/A	N/A
structural_annotation	UHGV-1416579_35	PF05065,MF_04119,TIGR04387,COG4653	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_36	phrog_541	81.3	9.9e-24	head-tail adaptor	connector
eggNOG-mapper	UHGV-1416579_36	642492.Clole_0822	72.8	0.00000000000000828	N/A	N/A
Pfam	UHGV-1416579_37	PF20536	N/A	N/A	N/A	DUF6751
structural_annotation	UHGV-1416579_37	PF20536,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_38	phrog_556	104.1	8.2e-31	minor head protein	head and packaging
UniRef90	UHGV-1416579_38	UniRef90_A0A1G4WU41	124.0	1.38e-34	Minor capsid protein	N/A
eggNOG-mapper	UHGV-1416579_38	883114.HMPREF9709_01190	125.0	1.06e-35	Minor capsid protein	N/A
structural_annotation	UHGV-1416579_38	PF11114	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_39	phrog_3266	48.5	0.00000000000013	tail completion	connector
PHROG	UHGV-1416579_40	phrog_3099	134.8	4.79999e-40	N/A	unknown function
eggNOG-mapper	UHGV-1416579_40	645991.Sgly_0346	73.2	0.0000000000000722	N/A	N/A
structural_annotation	UHGV-1416579_40	PF06199,TIGR02126,COG5437	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_42	phrog_706	118.7	3.9e-35	N/A	unknown function
UniRef90	UHGV-1416579_42	UniRef90_A0A1C6GGT7	395.0	0	Bacteriophage Gp15 protein	N/A
eggNOG-mapper	UHGV-1416579_42	1300150.EMQU_2490	59.3	0.0000000243	Bacteriophage Gp15 protein	N/A
Pfam	UHGV-1416579_42	PF06854	N/A	N/A	Bacteriophage Gp15 protein	Phage_Gp15
structural_annotation	UHGV-1416579_42	PF06854	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_43	phrog_1533	309.6	0	tail length tape measure protein	tail
UniRef90	UHGV-1416579_43	UniRef90_A0A1C6GH83	1758.0	0	Phage-related minor tail protein	N/A
eggNOG-mapper	UHGV-1416579_43	1235793.C809_01928	362.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1416579_43	PF10145	N/A	N/A	Phage-related minor tail protein	PhageMin_Tail
NCBIFam	UHGV-1416579_43	TIGR01760.1	N/A	N/A	phage tail tape measure protein	N/A
COG	UHGV-1416579_43	COG1196	N/A	N/A	Chromosome segregation ATPase Smc	N/A
structural_annotation	UHGV-1416579_43	PF10145,TIGR01760	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1416579_44	PF20458,TIGR01633,COG3499	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1416579_45	PF05954,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1416579_47	PF21621	N/A	N/A	N/A	N/A
PHROG	UHGV-1416579_49	phrog_199	77.9	1.1e-22	holin	lysis
UniRef90	UHGV-1416579_49	UniRef90_A0A1C6CUD9	282.0	0	Phage-related holin (Lysis protein)	N/A
eggNOG-mapper	UHGV-1416579_49	1120746.CCNL01000017_gene2574	170.0	0	toxin secretion phage lysis holin	N/A
Pfam	UHGV-1416579_49	PF05105	N/A	N/A	Bacteriophage holin family	Phage_holin_4_1
NCBIFam	UHGV-1416579_49	TIGR01593.1	N/A	N/A	toxin secretion/phage lysis holin	N/A
COG	UHGV-1416579_49	COG4824	N/A	N/A	Phage-related holin (Lysis protein)	N/A
structural_annotation	UHGV-1416579_49	PF05105,TIGR01593,COG4824	N/A	N/A	N/A	N/A
KOfam	UHGV-1416579_50	K01447	90.1	3.3e-26	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1416579_50	phrog_670	85.8	6.7e-25	endolysin	lysis
UniRef90	UHGV-1416579_50	UniRef90_R7KX59	439.0	0	Muramidase (Flagellum-specific)	N/A
eggNOG-mapper	UHGV-1416579_50	1163671.JAGI01000002_gene1233	115.0	3.69e-28	N-acetylmuramoyl-L-alanine amidase	N/A
Pfam	UHGV-1416579_50	PF01510	N/A	N/A	N-acetylmuramoyl-L-alanine amidase	Amidase_2
Pfam	UHGV-1416579_50	PF05036	N/A	N/A	SPOR domain	SPOR
COG	UHGV-1416579_50	COG5632	N/A	N/A	N-acetylmuramoyl-L-alanine amidase CwlA	N/A
structural_annotation	UHGV-1416579_50	PF01510,MF_04111,NF008758,COG5632	N/A	N/A	N/A	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1416579	Yes	34,800	47	100	1
UHGV-0122732	No	45,090	45	100	1
UHGV-1344669	No	32,398	48	93	1