vOTU vOTU-010169

vOTU: vOTU-010169

Overview

Genome (FASTA) Annotation Track (GFF) Proteins (FASTA) Protein Annotation (TSV)

Cluster properties
vOTU ID	vOTU-010169
Number of genomes	4
Taxonomy (ICTV)	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales
Taxonomy (UHGV)	vFAM-00022 → vSUBFAM-00212 → vGENUS-00944 → vSUBGEN-10978 → vOTU-010169
Host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella
Host range breadth	Genus
Lifestyle	lytic (Evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1511672
Biosample ID	N/A
Genome length (bp)	34,349 bps
CheckV completeness	98.96% (High-quality)
CDS count	66
CDS density	89.33%
tRNA count	0
Integrase	No
Viral confidence	Confident

Host assignment details
Assignment method	CRISPR
CRISPR-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	Total connections	56	Host agreement	75
PHIST-predicted host lineage	Bacteria → Actinobacteriota → Coriobacteriia → Coriobacteriales	Total connections	50	Host agreement	100

Representative genome content

Select to view: Genome Viewer Functional Annotation

Genome view (completeness: 98.96)

Functional Annotation

Reference	Gene ID	Reference ID	Bit-score	E-value	Information	Category
KOfam	UHGV-1511672_1	K02315	115.7	5.1e-34	dnaC; DNA replication protein DnaC	N/A
PHROG	UHGV-1511672_1	phrog_50	98.6	8.1e-29	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1511672_1	UniRef90_A0A096LKT1	363.0	0	IstB_IS21 domain-containing protein	N/A
eggNOG-mapper	UHGV-1511672_1	742722.HMPREF9463_00206	363.0	0	IstB-like ATP binding protein	N/A
Pfam	UHGV-1511672_1	PF01695	N/A	N/A	IstB-like ATP binding protein	IstB_IS21
COG	UHGV-1511672_1	COG1484	N/A	N/A	DNA replication protein DnaC	N/A
KOfam	UHGV-1511672_8	K00558	168.5	0	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1511672_8	phrog_116	180.5	0	DNA methyltransferase	other
UniRef90	UHGV-1511672_8	UniRef90_A0A096LED1	305.0	0	Cytosine-specific methyltransferase	N/A
eggNOG-mapper	UHGV-1511672_8	742722.HMPREF9463_00214	305.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1511672_8	MTase_II_00058	140.6	2.20004e-41	Type II methyltransferase	RM
Pfam	UHGV-1511672_8	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
NCBIFam	UHGV-1511672_8	TIGR00675.1	N/A	N/A	DNA (cytosine-5-)-methyltransferase	N/A
COG	UHGV-1511672_8	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1511672_8	PF00145,MF_01872,TIGR00675,COG0270	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1511672_9	1384484.AEQU_0051	62.0	0.000000000635	C-5 cytosine-specific DNA methylase	N/A
COG	UHGV-1511672_9	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
KOfam	UHGV-1511672_10	K00558	57.0	2.3e-16	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	N/A
PHROG	UHGV-1511672_10	phrog_26324	118.3	7.6e-35	DNA methyltransferase	other
UniRef90	UHGV-1511672_10	UniRef90_A0A096LKT3	223.0	0	DNA (cytosine-5-)-methyltransferase	N/A
eggNOG-mapper	UHGV-1511672_10	742722.HMPREF9463_00216	223.0	0	C-5 cytosine-specific DNA methylase	N/A
PADLOC	UHGV-1511672_10	MTase_II_00058	52.0	0.000000000000017	Type II methyltransferase	RM
Pfam	UHGV-1511672_10	PF00145	N/A	N/A	C-5 cytosine-specific DNA methylase	DNA_methylase
COG	UHGV-1511672_10	COG0270	N/A	N/A	DNA-cytosine methylase	N/A
structural_annotation	UHGV-1511672_14	PF01503,MF_01020,TIGR03188,COG0140	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_17	phrog_421	85.4	6.7e-25	N/A	unknown function
UniRef90	UHGV-1511672_17	UniRef90_A0A096KL80	404.0	0	N/A	N/A
eggNOG-mapper	UHGV-1511672_17	742722.HMPREF9463_00227	404.0	0	N/A	N/A
Pfam	UHGV-1511672_17	PF10979	N/A	N/A	N/A	DUF2786
structural_annotation	UHGV-1511672_17	PF10979	N/A	N/A	N/A	N/A
UniRef90	UHGV-1511672_18	UniRef90_UPI00189E8CAE	165.0	0	N/A	N/A
eggNOG-mapper	UHGV-1511672_18	883109.HMPREF0380_01366	58.2	0.0000000107	helicase superfamily c-terminal domain	N/A
Pfam	UHGV-1511672_18	PF11171	N/A	N/A	N/A	DUF2958
COG	UHGV-1511672_18	COG0553	N/A	N/A	Superfamily II DNA or RNA helicase, SNF2 family	N/A
UniRef90	UHGV-1511672_21	UniRef90_UPI00189F8E11	148.0	5.60519e-45	helix-turn-helix transcriptional regulator	N/A
PHROG	UHGV-1511672_22	phrog_2302	93.7	1.5e-27	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UniRef90	UHGV-1511672_22	UniRef90_A0A096KHV6	494.0	0	Rhodanese domain-containing protein	N/A
eggNOG-mapper	UHGV-1511672_22	742722.HMPREF9463_00233	494.0	0	sulfate reduction	N/A
COG	UHGV-1511672_22	COG0175	N/A	N/A	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	N/A
UniRef90	UHGV-1511672_23	UniRef90_D2QB73	50.4	0.00000548	Bacteriophage protein gp1	N/A
eggNOG-mapper	UHGV-1511672_23	1348663.KCH_49450	64.7	0.00000000000574	N/A	N/A
PHROG	UHGV-1511672_24	phrog_2412	48.8	0.00000000000012	N/A	unknown function
UniRef90	UHGV-1511672_25	UniRef90_R5KJ08	63.5	0.0000000000115	Terminase large subunit	N/A
eggNOG-mapper	UHGV-1511672_25	742722.HMPREF9463_00238	126.0	3.73e-34	N/A	N/A
PHROG	UHGV-1511672_26	phrog_38	102.3	4.2e-30	terminase large subunit	head and packaging
UniRef90	UHGV-1511672_26	UniRef90_UPI00166CA12B	343.0	0	terminase family protein	N/A
eggNOG-mapper	UHGV-1511672_26	742722.HMPREF9463_00238	629.0	0	N/A	N/A
structural_annotation	UHGV-1511672_26	PF17289,MF_04147,NF033889,COG5323	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_27	phrog_64	281.7	0	portal protein	head and packaging
UniRef90	UHGV-1511672_27	UniRef90_A0A096LKL8	741.0	0	Phage portal protein	N/A
eggNOG-mapper	UHGV-1511672_27	742722.HMPREF9463_00239	741.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1511672_27	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
NCBIFam	UHGV-1511672_27	TIGR01538.1	N/A	N/A	phage portal protein	N/A
structural_annotation	UHGV-1511672_27	PF05133,MF_04120,TIGR01538,COG3567	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_28	phrog_64	53.2	0.0000000000000032	portal protein	head and packaging
eggNOG-mapper	UHGV-1511672_28	742722.HMPREF9463_00239	162.0	0	Phage portal protein, SPP1 family	N/A
Pfam	UHGV-1511672_28	PF05133	N/A	N/A	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
structural_annotation	UHGV-1511672_29	PF06347,PF12949,NF040675,COG4991	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_30	phrog_115	136.0	3.4e-40	minor head protein	head and packaging
UniRef90	UHGV-1511672_30	UniRef90_A0A3N0AGE0	238.0	0	Phage_Mu_F domain-containing protein	N/A
eggNOG-mapper	UHGV-1511672_30	742722.HMPREF9463_00241	428.0	0	domain, Protein	N/A
COG	UHGV-1511672_30	COG2369	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1511672_30	PF04233,TIGR01641,COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_31	phrog_7625	91.1	1.2e-28	head morphogenesis	head and packaging
UniRef90	UHGV-1511672_31	UniRef90_A0A8E2FGG6	125.0	1.35e-30	Phage head morphogenesis protein	N/A
eggNOG-mapper	UHGV-1511672_31	742722.HMPREF9463_00241	422.0	0	domain, Protein	N/A
COG	UHGV-1511672_31	COG2369	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_34	phrog_172	116.0	3.3e-34	head scaffolding protein	head and packaging
UniRef90	UHGV-1511672_34	UniRef90_UPI00189A45A9	261.0	0	N/A	N/A
eggNOG-mapper	UHGV-1511672_34	742722.HMPREF9463_00244	350.0	0	N/A	N/A
Pfam	UHGV-1511672_34	PF14265	N/A	N/A	N/A	DUF4355
structural_annotation	UHGV-1511672_34	PF14265	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_37	phrog_29	86.7	3.1e-25	major head protein	head and packaging
UniRef90	UHGV-1511672_37	UniRef90_A0A1C7GBR8	101.0	2.25e-22	Capsid protein	N/A
eggNOG-mapper	UHGV-1511672_37	742722.HMPREF9463_00246	328.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1511672_37	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
structural_annotation	UHGV-1511672_37	PF03864,MF_04133	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_38	phrog_29	67.8	1.5e-19	major head protein	head and packaging
eggNOG-mapper	UHGV-1511672_38	742722.HMPREF9463_00246	312.0	0	Phage major capsid protein E	N/A
Pfam	UHGV-1511672_38	PF03864	N/A	N/A	Phage major capsid protein E	Phage_cap_E
PHROG	UHGV-1511672_39	phrog_132	41.9	0.000000000016	head-tail adaptor	connector
UniRef90	UHGV-1511672_39	UniRef90_X8HX34	89.0	1.3e-20	Phage gp6-like head-tail connector protein	N/A
eggNOG-mapper	UHGV-1511672_39	742722.HMPREF9463_00247	211.0	0	N/A	N/A
structural_annotation	UHGV-1511672_39	PF05135	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1511672_40	PF05521,TIGR01563,COG5614	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_41	phrog_5	42.1	0.000000000021	tail completion or Neck1 protein	connector
UniRef90	UHGV-1511672_41	UniRef90_UPI00189A8F38	209.0	0	HK97 gp10 family phage protein	N/A
eggNOG-mapper	UHGV-1511672_41	742722.HMPREF9463_00249	246.0	0	N/A	N/A
structural_annotation	UHGV-1511672_41	PF17395,TIGR01725,COG5005	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_42	phrog_176	48.8	0.00000000000011	tail terminator	connector
UniRef90	UHGV-1511672_42	UniRef90_UPI00189AA88D	246.0	0	N/A	N/A
eggNOG-mapper	UHGV-1511672_42	1347392.CCEZ01000005_gene1240	107.0	5.08e-28	N/A	N/A
Pfam	UHGV-1511672_42	PF16807	N/A	N/A	N/A	DUF5072
structural_annotation	UHGV-1511672_42	PF16807,COG5003	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_43	phrog_1407	58.0	1.7e-16	major tail protein	tail
UniRef90	UHGV-1511672_43	UniRef90_UPI00189A83F5	158.0	0	phage major tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1511672_43	742722.HMPREF9463_00251	199.0	0	Phage tail tube protein	N/A
Pfam	UHGV-1511672_43	PF06199	N/A	N/A	Phage tail tube protein	Phage_tail_2
COG	UHGV-1511672_43	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1511672_44	742722.HMPREF9463_00251	107.0	3.96e-29	Phage tail tube protein	N/A
COG	UHGV-1511672_44	COG5437	N/A	N/A	Phage tail protein, TP901-1 family	N/A
eggNOG-mapper	UHGV-1511672_45	1235792.C808_05346	62.0	0.0000000000513	N/A	N/A
structural_annotation	UHGV-1511672_45	PF11836	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_47	phrog_58	160.3	0	tail length tape measure protein	tail
eggNOG-mapper	UHGV-1511672_47	742722.HMPREF9463_00254	694.0	0	nuclear chromosome segregation	N/A
Pfam	UHGV-1511672_47	PF20155	N/A	N/A	Tape measure protein	TMP_3
NCBIFam	UHGV-1511672_47	TIGR02675.1	N/A	N/A	tape measure protein	N/A
COG	UHGV-1511672_47	COG3941	N/A	N/A	Phage tail tape-measure protein, controls tail length	N/A
KOfam	UHGV-1511672_48	K06882	55.2	2.7e-16	N/A	N/A
eggNOG-mapper	UHGV-1511672_48	742722.HMPREF9463_00255	736.0	0	Fibronectin type 3 domain	N/A
COG	UHGV-1511672_48	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
eggNOG-mapper	UHGV-1511672_49	742722.HMPREF9463_00255	667.0	0	Fibronectin type 3 domain	N/A
COG	UHGV-1511672_49	COG4733	N/A	N/A	Phage-related protein, tail protein J	N/A
PHROG	UHGV-1511672_50	phrog_1887	46.4	0.00000000000044	tail protein	tail
eggNOG-mapper	UHGV-1511672_50	742722.HMPREF9463_00256	672.0	0	N/A	N/A
structural_annotation	UHGV-1511672_50	PF14594,NF033848,COG4379	N/A	N/A	N/A	N/A
structural_annotation	UHGV-1511672_51	PF01455,MF_00075,NF003076,COG0361	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1511672_52	742722.HMPREF9463_00258	58.9	0.00000000033	N/A	N/A
PHROG	UHGV-1511672_53	phrog_17134	42.9	0.000000000003	N/A	unknown function
eggNOG-mapper	UHGV-1511672_53	742722.HMPREF9463_00258	193.0	0	N/A	N/A
UniRef90	UHGV-1511672_54	UniRef90_A0A096LKM2	531.0	0	N/A	N/A
eggNOG-mapper	UHGV-1511672_54	742722.HMPREF9463_00259	531.0	0	N/A	N/A
Pfam	UHGV-1511672_54	PF19789	N/A	N/A	N/A	DUF6273
eggNOG-mapper	UHGV-1511672_55	742722.HMPREF9463_00260	288.0	0	N/A	N/A
structural_annotation	UHGV-1511672_55	PF05635,TIGR02436	N/A	N/A	N/A	N/A
UniRef90	UHGV-1511672_56	UniRef90_B6GDG8	56.6	0.000000000709	N/A	N/A
eggNOG-mapper	UHGV-1511672_56	1121866.AUGK01000003_gene1446	48.1	0.00000503	N/A	N/A
PHROG	UHGV-1511672_57	phrog_1423	42.5	0.0000000000067	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1511672_57	UniRef90_UPI001C3C38E4	151.0	8.17938e-42	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1511672_57	742722.HMPREF9463_00262	299.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
COG	UHGV-1511672_57	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
KOfam	UHGV-1511672_58	K00986	43.8	0.0000000000029	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	N/A
PHROG	UHGV-1511672_58	phrog_1423	89.5	4.1e-26	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UniRef90	UHGV-1511672_58	UniRef90_UPI001F045792	336.0	0	RNA-directed DNA polymerase	N/A
eggNOG-mapper	UHGV-1511672_58	742722.HMPREF9463_00262	366.0	0	Reverse transcriptase (RNA-dependent DNA polymerase)	N/A
Pfam	UHGV-1511672_58	PF00078	N/A	N/A	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
COG	UHGV-1511672_58	COG3344	N/A	N/A	Retron-type reverse transcriptase	N/A
eggNOG-mapper	UHGV-1511672_59	742722.HMPREF9463_00263	209.0	0	N/A	N/A
PHROG	UHGV-1511672_60	phrog_134	58.5	7.9e-17	N/A	unknown function
UniRef90	UHGV-1511672_60	UniRef90_A0A6N9JIP8	96.7	2.29e-25	XkdX family protein	N/A
eggNOG-mapper	UHGV-1511672_60	1298920.KI911353_gene4834	55.8	0.000000000473	Phage uncharacterised protein (Phage_XkdX)	N/A
Pfam	UHGV-1511672_60	PF09693	N/A	N/A	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
NCBIFam	UHGV-1511672_60	TIGR01669.1	N/A	N/A	XkdX family protein	N/A
structural_annotation	UHGV-1511672_60	PF09693,TIGR01669	N/A	N/A	N/A	N/A
PHROG	UHGV-1511672_61	phrog_4105	53.1	0.0000000000000051	N/A	unknown function
eggNOG-mapper	UHGV-1511672_61	1394176.AWUO01000014_gene648	72.4	0.00000000000000564	N/A	N/A
eggNOG-mapper	UHGV-1511672_62	742722.HMPREF9463_00266	149.0	1.4013e-45	N/A	N/A
structural_annotation	UHGV-1511672_62	PF06946	N/A	N/A	N/A	N/A
UniRef90	UHGV-1511672_63	UniRef90_B6GDG3	174.0	0	Peptidase_C39_2 domain-containing protein	N/A
eggNOG-mapper	UHGV-1511672_63	1235790.C805_02947	57.4	0.000000476	Papain-like cysteine protease AvrRpt2	N/A
Pfam	UHGV-1511672_63	PF13529	N/A	N/A	Peptidase_C39 like family	Peptidase_C39_2
COG	UHGV-1511672_63	COG0768	N/A	N/A	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	N/A
structural_annotation	UHGV-1511672_63	PF03412,NF033920,COG4990	N/A	N/A	N/A	N/A
KOfam	UHGV-1511672_64	K07273	112.1	6.9e-33	acm; lysozyme	N/A
PHROG	UHGV-1511672_64	phrog_291	112.6	4.7e-33	endolysin	lysis
UniRef90	UHGV-1511672_64	UniRef90_A0A6G8AXZ5	130.0	1.24e-34	Lysozyme	N/A
eggNOG-mapper	UHGV-1511672_64	742722.HMPREF9463_00268	278.0	0	CW_7 repeat	N/A
Pfam	UHGV-1511672_64	PF01183	N/A	N/A	Glycosyl hydrolases family 25	Glyco_hydro_25
COG	UHGV-1511672_64	COG1388	N/A	N/A	LysM repeat	N/A
structural_annotation	UHGV-1511672_64	PF01183,MF_02227,NF003818,COG3757	N/A	N/A	N/A	N/A
eggNOG-mapper	UHGV-1511672_65	742722.HMPREF9463_00268	160.0	0	CW_7 repeat	N/A
COG	UHGV-1511672_65	COG1388	N/A	N/A	LysM repeat	N/A
KOfam	UHGV-1511672_66	K22409	59.1	8.2e-17	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	N/A
PHROG	UHGV-1511672_66	phrog_4602	52.0	0.000000000000012	transglycosylase	other
UniRef90	UHGV-1511672_66	UniRef90_UPI00190E7A52	59.3	0.00000000149	LysM peptidoglycan-binding domain-containing protein	N/A
eggNOG-mapper	UHGV-1511672_66	742722.HMPREF9463_00268	91.7	1.03e-20	CW_7 repeat	N/A
Pfam	UHGV-1511672_66	PF01476	N/A	N/A	LysM domain	LysM
COG	UHGV-1511672_66	COG1388	N/A	N/A	LysM repeat	N/A

All viral genomes

ID	Representative?	Length (bps)	% GC Content	CheckV Completeness	geNomad Score
UHGV-1511672	Yes	34,349	62	99	1
UHGV-1497542	No	42,694	62	100	1
UHGV-0114564	No	40,056	62	100	1
UHGV-1510112	No	21,565	62	62	1